Clone AT07554 Report

Search the DGRC for AT07554

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:75
Well:54
Vector:pOTB7
Associated Gene/TranscriptCG15549-RA
Protein status:AT07554.pep: gold
Preliminary Size:414
Sequenced Size:1132

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15549 2002-01-01 Sim4 clustering to Release 2
CG15549 2002-02-22 Blastp of sequenced clone
CG15549 2003-01-01 Sim4 clustering to Release 3
CG15549 2008-04-29 Release 5.5 accounting
CG15549 2008-08-15 Release 5.9 accounting
CG15549 2008-12-18 5.12 accounting

Clone Sequence Records

AT07554.complete Sequence

1132 bp (1132 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084104

> AT07554.complete
TGAGAATCCTCAAAATTCATGCTATTCGACGTGTGGCAAAAAGTGCAGTA
TGTTGGCCAATCTGTTGACCCTAAGCTGCCTTCTGGCCCAAATTATCCCT
CGGATTTGGGGGCAGTATGCGGCGGTGAACTGCTCAGATCCCAGGATCGA
ACTGACATCCTGTGGCCGCTTCAGTACGAACGGGTGCTGTGCCAAGGGAT
GTGTGAGGAATGTGCGCGGAAGGTGCGTCCAGGAGGAGTGCACCGCATCC
TGGAGCGGCTGGCTTCAAAGGCCAGTGACCATGAGCTGCTACTTCCACTG
GTTCCTGCTGATCTTCGCCGGGCTCATCACGGCCCTCATGCTGGGCCTGG
TGGCCTGCAACGCGGCCTGCGAAATAAGGCGCTACCTTCGCCAGCGGAGA
ATCGAGCGATTCAGGCGCTTCAGGGATCTGAGCGGAGTCTCCATTGGATC
CACTCAGTGCTAGAGCACGTGTGAGCATGAGGTCCTTGGACTAAGGGGCT
GGGAATCAGGAAGGAAGTGCCGAGGGATTTACCATAATCTGCAATACATT
AGCGGCAGCTTTGCTCTGGATTCCAATTCAATTCTTTGGGTATCTCCGGC
CAAAGCCATGTAAATTACGATTCGCCACCTCGGAAATCCTATTAGTAGTT
AAAACCTGATTAGGAAATACTTGCGGCCGAGCCTCGGGCTCACATTTGCT
GAAAGCAAATAATAATAAATGGCTCTCACATGCGAGATGCTTTGTGGATA
CATGCCCTCCAGGGTGACACCTCCTCCGGAGCAAGTCGAAGGTGGCGTGG
AATTCAGATGGCTGTGGAGTCGAGTCAAAGGTGCAATAACCCAACCGAGC
GGGGCACATAAAACTAAATGGCTGCGGGTTGCGTTGCCAGTCCTCGAAGT
CCTTCCCAGACCCCGGACCCCGGTCCCGGATCACCAGCTCGCTCCTCTGC
GGATTCAGTAGCTATTGCGGTGGAGATAACAACCATAAGGGTACACCCGA
GGGCACTCAGAGAGGAACGTTGCAAATAGGATTGTGTATATTTTGTCACA
GCTTCTTTCTGTTTTAAGTGAATGAGAGACTATTAAAATCGGGAAACTAA
ATATTTTATTTCAAAAAAAAAAAAAAAAAAAA

AT07554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-RA 1112 CG15549-RA 1..1112 1..1112 5545 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26757879..26758996 1112..1 5465 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30935394..30936507 1114..1 5555 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30676225..30677338 1114..1 5555 99.9 Minus
Blast to na_te.dros performed on 2019-03-15 18:59:36 has no hits.

AT07554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:00:26 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26757879..26758996 1..1112 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:55:06 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..414 50..463 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:42:59 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..414 50..463 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:39:18 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..414 50..463 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:36 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..414 50..463 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:42 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..414 50..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:07:39 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..1112 1..1112 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:42:59 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..1112 1..1112 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:39:18 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..1112 1..1112 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:36 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..1112 1..1112 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:42 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
CG15549-RA 1..1112 1..1112 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:26 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30935396..30936507 1..1112 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:26 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30935396..30936507 1..1112 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:00:26 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30935396..30936507 1..1112 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:39:18 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26761118..26762229 1..1112 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:05 Download gff for AT07554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30676227..30677338 1..1112 99   Minus

AT07554.hyp Sequence

Translation from 1 to 462

> AT07554.hyp
ENPQNSCYSTCGKKCSMLANLLTLSCLLAQIIPRIWGQYAAVNCSDPRIE
LTSCGRFSTNGCCAKGCVRNVRGRCVQEECTASWSGWLQRPVTMSCYFHW
FLLIFAGLITALMLGLVACNAACEIRRYLRQRRIERFRRFRDLSGVSIGS
TQC*

AT07554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-PA 137 CG15549-PA 1..137 17..153 742 100 Plus

AT07554.pep Sequence

Translation from 49 to 462

> AT07554.pep
MLANLLTLSCLLAQIIPRIWGQYAAVNCSDPRIELTSCGRFSTNGCCAKG
CVRNVRGRCVQEECTASWSGWLQRPVTMSCYFHWFLLIFAGLITALMLGL
VACNAACEIRRYLRQRRIERFRRFRDLSGVSIGSTQC*

AT07554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23303-PA 144 GF23303-PA 1..144 1..137 513 66 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11902-PA 137 GG11902-PA 1..137 1..137 542 84.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14089-PA 137 GH14089-PA 1..126 2..124 299 47.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15549-PA 137 CG15549-PA 1..137 1..137 742 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10622-PA 132 GI10622-PA 11..121 12..124 359 57.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13979-PA 132 GL13979-PA 17..132 22..137 285 49.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13806-PA 132 GA13806-PA 17..132 22..137 283 49.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12119-PA 137 GM12119-PA 1..137 1..137 654 90.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16741-PA 137 GD16741-PA 1..137 1..137 591 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22974-PA 133 GJ22974-PA 1..122 1..124 363 58.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13102-PA 141 GK13102-PA 15..141 11..137 381 55.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23350-PA 137 GE23350-PA 1..137 1..137 571 88.3 Plus