Clone AT07738 Report

Search the DGRC for AT07738

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:77
Well:38
Vector:pOTB7
Associated Gene/TranscriptRrp45-RA
Protein status:AT07738.pep: gold
Preliminary Size:1401
Sequenced Size:1512

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9606 2002-01-01 Sim4 clustering to Release 2
CG9606 2002-02-22 Blastp of sequenced clone
CG9606 2003-01-01 Sim4 clustering to Release 3
Rrp45 2008-04-29 Release 5.5 accounting
Rrp45 2008-08-15 Release 5.9 accounting
Rrp45 2008-12-18 5.12 accounting

Clone Sequence Records

AT07738.complete Sequence

1512 bp (1512 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089277

> AT07738.complete
CCTCGTGCCGCAGCGAATACCCAGGATGTTCCATAACTCAAATTTTTTCG
AGCCGGGCAAATCGAAGCCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAG
CAAAACCAACGCCTCGATGGGCGGCGCTCCAACGAGTCCCGCGATGTGGA
GCTGACCTTCGGCAAGGATTGGGGCTCCGTGGCGGTGTCCATGGGCGATA
CGAAGGTACTGGCCCAAGTGACCTGCGAAATGGGACCGCCGGCCTTGTCG
CGGCCCAACGAAGGCAAAATCCACCTGAACGTATATCTTGGCGGTGTTGC
TTTTCTGGACGAGGCGCATACCACACATGACCAGCGATCGCTAAAACTGA
ACTCCCTGCTCGAGAGGACCTTCCGCAGCTCTAGAAGCATCGATCTGGAA
TCTCTGTGCGTGGCCGTCGAGAAGCATGTGTGGTGCATCCGTGTCAACGT
CAATGTGCTCAATCACGACGGGAATCTGTATGACGCCAGCACCATAGCCA
CTTTGGCTGCATTGATGCACTTCCGTCGACCGGATGTCTGGTATAAGGAC
GGCGAACTGCGCATCTTTAAGAAAAAGGAGCGCGAATTCATTCCACTGCT
TTTCCACCACTATCCCGTCAGTGTAACCTACTGTGTTTACAAGAGCAGTG
TGCAACCAATACTGGATCCTACGCTGCTGGAGGAGAACGCCGCCGATTCG
GTAATTGTCCTGAGCTTTAACTCCTTCCAGGAGCTGTGCAGCCTGACTGC
CGGAGGCACTGCACCCACAAATGCCCGTATCATCATGCAGTGTGCCCGCA
ATGCGGCGGTTCGTTGCAAGTCTCTGTTGAATTTCGTACGCAAAGCTTTG
GCGCTGGACGAAGAGTGTCGATCGCAGGGCGATCAATCGGTCGATGGGCT
GGTGGCACTGATTTTAAATACGGAGCACAAGTTGAGCTACAACAAACTGA
TGGGCAGACAGAAACAGGAGCAGCAACCTCCGCCAAGCGAGAAAATGCAG
TTGGATAATAACGAGAGCAGTGAGACGCCTGTGGCCAACGAAGAGCCGTC
CAAAGAGGAAAGTGCTGGCGCACCGATGGACACCAGCGACTGGCTGCCAC
ACGATGAGGACTCCCAGGAACTGCCCATGCGCTCGGAAGCAAGCCCATCG
AAGGCAGGCCTTAAAGGCAAACAAAGTCGCGGCAAATACAAGGCGAACAA
AAAGACACCGCCGAGGAAGCAAAATCACAGCGACTCCGAGGAGGAAGCCA
AGCGATACATCTAGCCGTTGTGATAGTCGTGTAGTTAAGAGAAAATGCTT
TCTATTAAGTTTTATTTAGGCTTATATGTATGGCTAAAATCAGTCTAGGC
TTTAACATAAATCGTTTAATGCGTAATTCCAATTGATTTGTGGAACCGAT
GTTCGTCTAAGTTAGGCTTAAACTAGAGCTCTAAATATATCTCCAAACCG
CCGGGGCAAACGACACGATGTTTTAGTTTAAATATTGCAAAAAAAAAAAA
AAAAAAAAAAAA

AT07738.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-RA 1628 Rrp45-RA 103..1583 11..1491 7390 99.9 Plus
Sap30-RA 1740 Sap30-RA 1536..1740 1491..1287 1025 100 Minus
Sap30.a 1690 Sap30.a 1498..1690 1491..1299 965 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16679407..16680148 1223..482 3710 100 Minus
chrX 22417052 chrX 16680308..16680779 482..11 2360 100 Minus
chrX 22417052 chrX 16679087..16679351 1488..1224 1325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16789773..16790514 1223..482 3695 99.9 Minus
X 23542271 X 16790674..16791145 482..11 2360 100 Minus
X 23542271 X 16789450..16789717 1491..1224 1340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16797871..16798612 1223..482 3695 99.8 Minus
X 23527363 X 16798772..16799243 482..11 2360 100 Minus
X 23527363 X 16797548..16797815 1491..1224 1340 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:04:30 has no hits.

AT07738.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:05:36 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16679087..16679351 1224..1488 100 <- Minus
chrX 16679407..16680147 483..1223 100 <- Minus
chrX 16680308..16680785 1..482 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:55:30 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1239 26..1264 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:42:48 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1239 26..1264 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:56:52 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1239 26..1264 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:29 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1239 26..1264 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:20:51 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1239 26..1264 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:07:29 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1484 4..1488 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:42:48 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1484 4..1488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:56:52 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 83..1566 1..1488 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:30 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 1..1484 4..1488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:20:51 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp45-RA 116..1599 1..1488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:36 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16789453..16789717 1224..1488 100 <- Minus
X 16789773..16790513 483..1223 99 <- Minus
X 16790674..16791151 1..482 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:36 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16789453..16789717 1224..1488 100 <- Minus
X 16789773..16790513 483..1223 99 <- Minus
X 16790674..16791151 1..482 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:05:36 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16789453..16789717 1224..1488 100 <- Minus
X 16789773..16790513 483..1223 99 <- Minus
X 16790674..16791151 1..482 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:56:52 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16683486..16683750 1224..1488 100 <- Minus
arm_X 16683806..16684546 483..1223 99 <- Minus
arm_X 16684707..16685184 1..482 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:45:57 Download gff for AT07738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16797551..16797815 1224..1488 100 <- Minus
X 16797871..16798611 483..1223 99 <- Minus
X 16798772..16799249 1..482 99   Minus

AT07738.hyp Sequence

Translation from 1 to 1263

> AT07738.hyp
PSQRIPRMFHNSNFFEPGKSKPERSFVQLAVKQNQRLDGRRSNESRDVEL
TFGKDWGSVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAF
LDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVN
VLNHDGNLYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLF
HHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAG
GTAPTNARIIMQCARNAAVRCKSLLNFVRKALALDEECRSQGDQSVDGLV
ALILNTEHKLSYNKLMGRQKQEQQPPPSEKMQLDNNESSETPVANEEPSK
EESAGAPMDTSDWLPHDEDSQELPMRSEASPSKAGLKGKQSRGKYKANKK
TPPRKQNHSDSEEEAKRYI*

AT07738.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-PB 412 CG9606-PB 1..412 8..419 2146 100 Plus
Rrp45-PA 412 CG9606-PA 1..412 8..419 2146 100 Plus

AT07738.pep Sequence

Translation from 25 to 1263

> AT07738.pep
MFHNSNFFEPGKSKPERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWG
SVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTT
HDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVLNHDGN
LYDASTIATLAALMHFRRPDVWYKDGELRIFKKKEREFIPLLFHHYPVSV
TYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNA
RIIMQCARNAAVRCKSLLNFVRKALALDEECRSQGDQSVDGLVALILNTE
HKLSYNKLMGRQKQEQQPPPSEKMQLDNNESSETPVANEEPSKEESAGAP
MDTSDWLPHDEDSQELPMRSEASPSKAGLKGKQSRGKYKANKKTPPRKQN
HSDSEEEAKRYI*

AT07738.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22565-PA 412 GF22565-PA 1..412 1..412 1315 61 Plus
Dana\GF11284-PA 296 GF11284-PA 7..221 13..222 165 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18224-PA 415 GG18224-PA 1..415 1..412 1682 77.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14641-PA 415 GH14641-PA 1..415 1..412 1267 59.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp45-PB 412 CG9606-PB 1..412 1..412 2146 100 Plus
Rrp45-PA 412 CG9606-PA 1..412 1..412 2146 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11625-PA 417 GI11625-PA 1..417 1..412 1265 58.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26867-PA 398 GL26867-PA 1..385 1..376 1248 60.4 Plus
Dper\GL10119-PA 296 GL10119-PA 7..219 13..220 150 25.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21908-PA 398 GA21908-PA 1..371 1..360 1238 61.4 Plus
Dpse\GA21043-PA 296 GA21043-PA 7..219 13..220 152 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13365-PA 405 GM13365-PA 1..405 1..412 1885 87.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15722-PA 407 GD15722-PA 1..407 1..412 1837 85.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11305-PA 423 GJ11305-PA 1..423 1..412 1311 60.7 Plus
Dvir\GJ22278-PA 296 GJ22278-PA 7..168 13..171 153 27.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14785-PA 415 GK14785-PA 1..414 1..412 1268 59 Plus
Dwil\GK21414-PA 296 GK21414-PA 7..249 13..245 160 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15642-PA 415 GE15642-PA 1..415 1..412 1719 79.1 Plus