Clone AT07821 Report

Search the DGRC for AT07821

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:78
Well:21
Vector:pOTB7
Associated Gene/TranscriptCG3124-RA
Protein status:AT07821.pep: gold
Preliminary Size:990
Sequenced Size:1181

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3124 2002-01-01 Sim4 clustering to Release 2
CG3124 2002-02-22 Blastp of sequenced clone
CG3124 2003-01-01 Sim4 clustering to Release 3
CG3124 2008-04-29 Release 5.5 accounting
CG3124 2008-08-15 Release 5.9 accounting
CG3124 2008-12-18 5.12 accounting

Clone Sequence Records

AT07821.complete Sequence

1181 bp (1181 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089280

> AT07821.complete
GTAGGATTCAGATCTATTGGTAGAAAGTAAGAAAAAAAAAATTCTCAAAA
TTTAAGTTATATACAAATTTGGAGTGAAATATTTTATAAACACTTTCGGA
GTATCTCGAGCTTTCCACACATCGAAAATGAATTTTTGTTCAGTGCCTTA
CGAAGCTGACTACGGCATGTACGCCGATTCCAAGATGAAGAGCGTTCCTC
AGTACCCCCTGAGCATGGGAGTCGGTCAGGGTCAAGGACAGTCCATGGCC
ATGCAGCCCCTGAATCCACCGCAGATGAATCTGCAGATGCAGATGCCCGT
GTGCCAGTCGGGCGCTTCGTCGTACCCAATGCAGGGTATGCCGCTGGGCA
TGATGCAAGGGGGCAATCAGATGACCCCCATGTCCACGATGTCCACCCAG
CTGCCGATTGGAGCGGTGACTCCCCTGAGCAGCATGACCATGATGCCCAT
GATGGGCAATCCCATGGGCGCCATCGATGCCCCCGGGATCAATGCAGTGC
TGCCTGACCTGCAGCCGATGACCTCGATGGGTCAGATGCAGCCGCTGCAA
CAGTACAATCCCAGTGGATCTACCACCCAAATGCATCAAGGACGTCTGAC
GGGCGGCTGCAATGCTGTGATGTCTGCGCCCTGTCCCTCGTCGCCCTCGC
AAGCTGGCGGCTGGAGCTCCGGTCCCAGCCCCAACCAAATGATGAACAGC
TCCAATATGTGGCAATACAGTCAGCCTATGCAGAGTCACCAGCCGCAGTA
CCACCAGCAGCACCAGCAGCAGCAGCAACAGCAGCAGCAGCACTATCAGC
AGCCGAGCCAGGGACACCAACAGGTCAACCGGATGAAGACCTCCTACGAC
GCTCCCATGTACCGGGATATGCGGAACGGTCTAAACGCACCATCGATACA
CGATTCATCGAAGTACAGCAAAGGCAATCAATCATTCAATTGTGGAAAAG
CGGTTAGCAAGGTCCCCCATTGGCGTTGACGAAACCCTTGAGCCCATCAT
TAGTTGTTTTTGTACTTTTGCATGATTGGTGTCTCTTTATTTATGTGTTC
CAAGACTTCCCCTACGCAAGCAAACAGATACTCAAACCCACAAGAAACAC
AGACTTGGCCACAAACATATTGGTGTGGAATAAATAGTTTATATGTTTAT
GGCCGAAATGGAAAAAAAAAAAAAAAAAAAA

AT07821.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3124-RA 1252 CG3124-RA 63..1225 1..1163 5770 99.7 Plus
CG3124.b 1174 CG3124.b 19..962 1..944 4690 99.7 Plus
CG3124.a 1302 CG3124.a 19..904 1..886 4400 99.7 Plus
CG3124.a 1302 CG3124.a 931..1208 886..1163 1375 99.6 Plus
CG3124.b 1174 CG3124.b 962..1174 950..1162 1050 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19169540..19170242 885..183 3485 99.7 Minus
chr2R 21145070 chr2R 19169130..19169347 1161..944 1075 99.5 Minus
chr2R 21145070 chr2R 19170301..19170482 182..1 910 100 Minus
chr2R 21145070 chr2R 19169404..19169463 945..886 300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23283153..23283855 885..183 3485 99.7 Minus
2R 25286936 2R 23282741..23282960 1163..944 1085 99.5 Minus
2R 25286936 2R 23283912..23284095 184..1 920 100 Minus
2R 25286936 2R 23283017..23283076 945..886 300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23284352..23285054 885..183 3485 99.7 Minus
2R 25260384 2R 23283940..23284159 1163..944 1085 99.5 Minus
2R 25260384 2R 23285111..23285294 184..1 920 100 Minus
2R 25260384 2R 23284216..23284275 945..886 300 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:06:02 has no hits.

AT07821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:06:47 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19169130..19169346 945..1161 99 <- Minus
chr2R 19169405..19169463 886..944 100 <- Minus
chr2R 19169540..19169621 804..885 100 == Minus
chr2R 19169686..19170240 185..739 99 <- Minus
chr2R 19170299..19170482 1..184 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:55:39 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 1..852 128..979 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:42:53 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 1..852 128..979 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:06:09 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 1..852 128..979 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:33 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 1..852 128..979 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:37 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 1..852 128..979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:07:34 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 19..1179 1..1161 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:42:53 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 19..1179 1..1161 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:06:09 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 19..1179 1..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:33 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 9..1169 1..1161 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:37 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
CG3124-RA 19..1179 1..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:47 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23282743..23282959 945..1161 99 <- Minus
2R 23283018..23283076 886..944 100 <- Minus
2R 23283153..23283853 185..885 99 <- Minus
2R 23283912..23284095 1..184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:47 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23282743..23282959 945..1161 99 <- Minus
2R 23283018..23283076 886..944 100 <- Minus
2R 23283153..23283853 185..885 99 <- Minus
2R 23283912..23284095 1..184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:06:47 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23282743..23282959 945..1161 99 <- Minus
2R 23283018..23283076 886..944 100 <- Minus
2R 23283153..23283853 185..885 99 <- Minus
2R 23283912..23284095 1..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:06:09 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19171435..19171618 1..184 100   Minus
arm_2R 19170266..19170482 945..1161 99 <- Minus
arm_2R 19170541..19170599 886..944 100 <- Minus
arm_2R 19170676..19171376 185..885 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:46:01 Download gff for AT07821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23283960..23284176 945..1161 99 <- Minus
2R 23284235..23284293 886..944 100 <- Minus
2R 23284370..23285070 185..885 99 <- Minus
2R 23285129..23285312 1..184 100   Minus

AT07821.pep Sequence

Translation from 127 to 978

> AT07821.pep
MNFCSVPYEADYGMYADSKMKSVPQYPLSMGVGQGQGQSMAMQPLNPPQM
NLQMQMPVCQSGASSYPMQGMPLGMMQGGNQMTPMSTMSTQLPIGAVTPL
SSMTMMPMMGNPMGAIDAPGINAVLPDLQPMTSMGQMQPLQQYNPSGSTT
QMHQGRLTGGCNAVMSAPCPSSPSQAGGWSSGPSPNQMMNSSNMWQYSQP
MQSHQPQYHQQHQQQQQQQQQHYQQPSQGHQQVNRMKTSYDAPMYRDMRN
GLNAPSIHDSSKYSKGNQSFNCGKAVSKVPHWR*

AT07821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13304-PA 315 GF13304-PA 1..315 1..283 622 52.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20052-PA 277 GG20052-PA 1..277 1..283 1014 81.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3124-PA 283 CG3124-PA 1..283 1..283 1539 100 Plus
CG3124-PB 256 CG3124-PB 1..255 1..255 1377 99.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11284-PA 309 GL11284-PA 1..309 1..283 344 43.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16114-PA 303 GA16114-PA 1..303 1..283 348 42.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15566-PA 279 GM15566-PA 1..279 1..283 1169 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25068-PA 280 GD25068-PA 1..280 1..283 1158 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20968-PA 294 GJ20968-PA 3..294 1..283 215 35.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19584-PA 260 GK19584-PA 1..260 1..274 365 45.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11588-PA 275 GE11588-PA 1..275 1..283 1069 84.1 Plus

AT07821.hyp Sequence

Translation from 127 to 978

> AT07821.hyp
MNFCSVPYEADYGMYADSKMKSVPQYPLSMGVGQGQGQSMAMQPLNPPQM
NLQMQMPVCQSGASSYPMQGMPLGMMQGGNQMTPMSTMSTQLPIGAVTPL
SSMTMMPMMGNPMGAIDAPGINAVLPDLQPMTSMGQMQPLQQYNPSGSTT
QMHQGRLTGGCNAVMSAPCPSSPSQAGGWSSGPSPNQMMNSSNMWQYSQP
MQSHQPQYHQQHQQQQQQQQQHYQQPSQGHQQVNRMKTSYDAPMYRDMRN
GLNAPSIHDSSKYSKGNQSFNCGKAVSKVPHWR*

AT07821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3124-PA 283 CG3124-PA 1..283 1..283 1539 100 Plus
CG3124-PB 256 CG3124-PB 1..255 1..255 1377 99.6 Plus