Clone AT07973 Report

Search the DGRC for AT07973

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:79
Well:73
Vector:pOTB7
Associated Gene/TranscriptRpn8-RA
Protein status:AT07973.pep: gold
Preliminary Size:1432
Sequenced Size:1511

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3416 2002-01-01 Sim4 clustering to Release 2
CG3416 2002-02-22 Blastp of sequenced clone
CG3416 2003-01-01 Sim4 clustering to Release 3
Mov34 2008-04-29 Release 5.5 accounting
Mov34 2008-08-15 Release 5.9 accounting
Mov34 2008-12-18 5.12 accounting

Clone Sequence Records

AT07973.complete Sequence

1511 bp (1511 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089283

> AT07973.complete
GCCTTGAAATAAATTCAGAAAGCGAGGCGTCGGCCACACTGTAAATCGTT
TCTGCTTGTCATTTTGGCCTGAGTTTTTTGCCGCAAATTGCAGGTAATTT
AGCGAAAAACAGGAGTCGCAGGAAGCCAAACCCGTCGAAAACAAATCAGT
CCGGTACCTATCAATCGGCGCAGAGGTCATAGTAAGCCCCCGAACCGAAA
ACCCAGAAAAAGCACAAACATGCCGTCGCAGGAGGTGAGCGTAAACAAAG
TGATAGTGCATCCATTGGTTCTGCTGTCCGTGGTGGATCACTTCAACCGG
ATGGGAAAGATTGGCAACCAGAAGCGCGTAGTGGGAGTCCTTCTGGGCTG
CTGGCGATCCAAGGGAGTGCTCGATGTGTCCAACAGCTTCGCAGTGCCCT
TCGACGAGGATGACAAGGACAAGTCGGTGTGGTTCCTGGACCACGACTAC
CTGGAGAATATGTACGGCATGTTCAAAAAGGTGAACGCCAGGGAACGGGT
TGTGGGATGGTATCACACAGGTCCCAAGCTCCACCAAAACGACATAGCCA
TTAACGAGCTGGTCCGGCGCTATTGTCCCAACTCCGTGCTGGTCATCATC
GACGCCAAGCCCAAGGATTTGGGCCTGCCCACAGAGGCGTACATATCGGT
GGAGGAAGTCCATGACGACGGCTCTCCGACCAGCAAAACCTTCGAGCATG
TGCCCAGCGAGATTGGCGCCGAGGAGGCGGAGGAGGTGGGCGTGGAGCAT
CTGCTGCGTGACATCAAGGACACAACCGTGGGCAGCCTGTCGCAAAAGAT
CACCAACCAGCTCATGGGTCTGAAAGGCCTGAATGCCCAGCTGCGGGACA
TAAAGCAGTATCTGCAGCGCGTCGGCGACAGCAAGATGCCAATCAACCAC
CAGATTGTCTACCAGCTGCAGGACATCTTCAACCTGCTGCCCGATATAAC
CAATGACCAGTTCACGGGCACAATGTATGTGAAGACCAACGACCAAATGC
TGGTCGTCTACCTGGCCTCCATGGTGCGCTCGATCATTGCCCTGCACAAC
CTGATCAACAACAAGCTGGCCAACCGCGACGCCGAGGAGGGCAAGAGCGA
CAGCAAGGAGGCCAAGGAGAAGAATAAGGATAGCAAGGATAAGGACAACA
AGGAGACCAAGGACAAGGACGGCAAGAAGGCGGAGGAGAAGGCCGACAAG
GGCAAGGACGAAGGCGGCAAGGGTTCGCGCAAATAGGAGCGGAAGAAAAA
GCGCAAGCCCCGTCGCAAGCGAAAGAAGCAGCGGCCGCAGGACTAGCTGC
TGCTTCTTCTGTTCTCCAGGAAGTGGAACTCATCTGCAGACCATACGGCG
AGGGTGTGCAGTGGCCTCAGAAATCAAGCATTGCTACCATTCATCGTTCA
TTTTCCACACGAAATTAAGCTCCCTCTTATTATTTCGCGTAACTAACTAA
TGGCAAGTTTATGTAATTAAAAATTAAATAATTTAAATAACAAAAAAAAA
AAAAAAAAAAA

AT07973.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Mov34-RA 1583 Mov34-RA 34..1522 1..1489 7355 99.5 Plus
Mov34.b 1452 Mov34.b 54..1451 92..1489 6900 99.5 Plus
Mov34.a 1466 Mov34.a 70..1465 94..1489 6890 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20289353..20290450 392..1489 5475 99.9 Plus
chr2R 21145070 chr2R 20288895..20289288 1..394 1970 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24403429..24404526 392..1489 5400 99.5 Plus
2R 25286936 2R 24402971..24403364 1..394 1970 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24404628..24405725 392..1489 5400 99.4 Plus
2R 25260384 2R 24404170..24404563 1..394 1970 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:01:17 has no hits.

AT07973.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:02:29 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20288895..20289288 1..394 100 -> Plus
chr2R 20289356..20290066 395..1105 99 == Plus
chr2R 20290176..20290424 1215..1463 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:55:53 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1017 220..1236 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:42:41 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1017 220..1236 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:23:24 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RB 1..1077 220..1296 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:25 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1017 220..1236 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:13:03 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RB 1..1077 220..1296 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:07:22 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1490 1..1491 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:42:41 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1490 1..1491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:24 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 1..1456 35..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:25 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Mov34-RA 1..1490 1..1491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:13:03 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn8-RA 1..1456 35..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:29 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24402971..24403364 1..394 100 -> Plus
2R 24403432..24404527 395..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:29 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24402971..24403364 1..394 100 -> Plus
2R 24403432..24404527 395..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:29 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24402971..24403364 1..394 100 -> Plus
2R 24403432..24404527 395..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:24 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20290494..20290887 1..394 100 -> Plus
arm_2R 20290955..20292050 395..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:45:52 Download gff for AT07973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24404188..24404581 1..394 100 -> Plus
2R 24404649..24405744 395..1491 99   Plus

AT07973.pep Sequence

Translation from 219 to 1235

> AT07973.pep
MPSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGV
LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHT
GPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDD
GSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMG
LKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTG
TMYVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEAKE
KNKDSKDKDNKETKDKDGKKAEEKADKGKDEGGKGSRK*

AT07973.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13608-PA 354 GF13608-PA 1..334 1..334 1727 96.7 Plus
Dana\GF16095-PA 280 GF16095-PA 8..270 11..275 248 29.4 Plus
Dana\GF18860-PA 344 GF18860-PA 49..332 2..286 215 24.2 Plus
Dana\GF11048-PA 285 GF11048-PA 10..271 10..271 189 23.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22963-PA 338 GG22963-PA 1..338 1..338 1786 99.4 Plus
Dere\GG11433-PA 280 GG11433-PA 8..270 11..275 252 29.3 Plus
Dere\GG11147-PA 340 GG11147-PA 53..328 11..286 211 24.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20991-PA 345 GH20991-PA 1..345 1..338 1499 88.7 Plus
Dgri\GH18119-PA 280 GH18119-PA 8..270 11..275 262 29.7 Plus
Dgri\GH22436-PA 344 GH22436-PA 57..332 11..286 227 25.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-PC 338 CG3416-PC 1..338 1..338 1753 100 Plus
Rpn8-PB 358 CG3416-PB 1..338 1..338 1753 100 Plus
Rpn8-PA 338 CG3416-PA 1..338 1..338 1753 100 Plus
eIF3f1-PA 280 CG9769-PA 8..271 11..276 259 28.7 Plus
CSN6-PA 341 CG6932-PA 54..321 11..280 223 23 Plus
eIF3f2-PA 286 CG8335-PA 11..272 10..271 188 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21325-PA 340 GI21325-PA 1..340 1..338 1560 93.8 Plus
Dmoj\GI23834-PA 280 GI23834-PA 8..270 11..275 271 30.4 Plus
Dmoj\GI22243-PA 340 GI22243-PA 55..328 13..286 237 24.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20068-PA 343 GL20068-PA 1..298 1..298 1489 97.3 Plus
Dper\GL21488-PA 280 GL21488-PA 8..270 11..275 246 28.2 Plus
Dper\GL13811-PA 347 GL13811-PA 60..335 11..286 216 24.1 Plus
Dper\GL16249-PA 288 GL16249-PA 10..284 9..281 169 21.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17437-PA 343 GA17437-PA 1..298 1..298 1489 97.3 Plus
Dpse\GA22021-PA 280 GA22021-PA 8..270 11..275 246 28.2 Plus
Dpse\GA19964-PA 347 GA19964-PA 60..335 11..286 216 24.1 Plus
Dpse\GA25107-PA 288 GA25107-PA 10..284 9..281 183 21.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11856-PA 338 GM11856-PA 1..338 1..338 1791 100 Plus
Dsec\GM10688-PA 280 GM10688-PA 8..270 11..275 252 29.3 Plus
Dsec\GM26445-PA 341 GM26445-PA 54..329 11..286 211 24.1 Plus
Dsec\GM16538-PA 285 GM16538-PA 2..271 3..271 181 24.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11854-PA 338 GD11854-PA 1..338 1..338 1791 100 Plus
Dsim\GD19663-PA 280 GD19663-PA 8..270 11..275 252 29.3 Plus
Dsim\CSN6-PA 341 GD20964-PA 54..329 11..286 211 24.1 Plus
Dsim\GD10400-PA 285 GD10400-PA 10..271 10..271 179 23.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21597-PA 343 GJ21597-PA 1..343 1..338 1499 88.9 Plus
Dvir\GJ23292-PA 280 GJ23292-PA 8..270 11..275 266 29.7 Plus
Dvir\GJ23049-PA 340 GJ23049-PA 55..328 13..286 235 24.5 Plus
Dvir\GJ17826-PA 290 GJ17826-PA 10..280 9..275 151 20.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22207-PA 342 GK22207-PA 1..342 1..338 1545 92.7 Plus
Dwil\GK14430-PA 280 GK14430-PA 8..270 11..275 261 29.3 Plus
Dwil\GK11302-PA 338 GK11302-PA 51..326 11..286 212 23.6 Plus
Dwil\GK21334-PA 286 GK21334-PA 9..286 9..278 181 23 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14400-PA 338 GE14400-PA 1..338 1..338 1785 99.4 Plus
Dyak\GE25339-PA 280 GE25339-PA 8..270 11..275 252 29.3 Plus
Dyak\GE10312-PA 340 GE10312-PA 53..328 11..286 212 24.1 Plus
Dyak\GE20747-PA 279 GE20747-PA 4..265 10..271 175 25.7 Plus

AT07973.hyp Sequence

Translation from 219 to 1235

> AT07973.hyp
MPSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGV
LDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHT
GPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDD
GSPTSKTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMG
LKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTG
TMYVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEAKE
KNKDSKDKDNKETKDKDGKKAEEKADKGKDEGGKGSRK*

AT07973.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn8-PC 338 CG3416-PC 1..338 1..338 1753 100 Plus
Rpn8-PA 338 CG3416-PA 1..338 1..338 1753 100 Plus
Rpn8-PB 358 CG3416-PB 1..338 1..338 1753 100 Plus
CG9769-PA 280 CG9769-PA 8..271 11..276 259 28.7 Plus
CSN6-PA 341 CG6932-PA 54..321 11..280 223 23 Plus