Clone AT08049 Report

Search the DGRC for AT08049

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:80
Well:49
Vector:pOTB7
Associated Gene/TranscriptCG1440-RC
Protein status:AT08049.pep: gold
Sequenced Size:2010

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1440 2009-08-14 Manual selection by Sue Celniker

Clone Sequence Records

AT08049.complete Sequence

2010 bp assembled on 2009-12-11

GenBank Submission: BT120019.1

> AT08049.complete
GACGAATAGCGTAAGTCAGTTTCTGCTGACAAAATTGCTTTGTTATTTGT
TGTTTAATGTTTCGCTTTGAAATTGGCCAAAATCGCCGTCGTTTTTATTT
CTTTTACCTGGACGATCAACACAAAATTATCGCTTTCGGTTTCTTTTCTG
GGTAATCCGATCCTCCAGTTTGGGCGGTAAGGCGGTCAGTGACGCAGATC
AAGATCAATTCCCCGAAACTGAGTCAAAATCCAAATACGTATCGCAATCG
AATCCCGTATCCGCAGCAGCAGCAGGAGCCGGCGATGTACTATTCAAAAG
AATCCGTTCAAACTCACACAATATCCGGCGAACGTTGCCAATCCCATTTA
CTTGCAGCTGACAACAACAGCGGATCCGGAGGAGGTGGAAGCGGTGGCGG
TGGCGCCGGTAACAATAACAGTGCCAATAGTGGTAAGAACTCGACGCACA
GGTTCGCTGAGACCAGTGTGATCACCAATCAATTGTTGGAAAAATGGCGG
AAAAACTTCTACAGCGAACCGAAGAATCTGCTGGCGCAGAACGTCTGCTC
ACGCGTTGATCCGTTCGATGTGTGCCTGTCCAGGAAGGCACTGGAGACCA
CCAATCATGTGTTCAACTACAAGGTGGAAACGGAGGGCAAGCCGGTGACC
AATCAAAGGAGCTCCGGCCGCTGCTGGCTGTTTGCGGCCCTCAACTGCAT
CCGCCTGCCATTCATGAAGAACTACAATCTGGACGAGTTCGAATTCTCGC
AGGCCTTCCTCTTCTACTGGGACAAGATCGAGCGTTGCAACTACTTTCTC
AACAATGTTGTGAAGACGGCACAGCGCGGCGAGAAGGTTGATGGTCGTCT
GGTGTCGTTCCTGCTACTCGATCCCACCTCCGATGGCGGCCAGTGGGACA
TGCTGGTCAATCTGATAACCAAACACGGCCTTATGCCAAAGAAATGCTTT
CCCGAGAGCTTCAGCTGCGAGTCCAGCTTACGAATGAACGCCATACTGAA
GAGCAAGCTACGGGAGTATGCCCGCAATTTGCGCGTGCTGATGGAGAAGA
ATCCCACGGATGAGGAGATCGCCTGCAAGATCCAGGAGCAAATGGCCGAG
ATCTACAAGGTGGTTGGCATTTGCCTGGGCATACCCTCGGAGACCTTCAC
CTGGGAGTACTATGACAAGAGCAAGAACTATCAGTCAATCGGACCCGTTA
GTTCGCTGGAGTTCTATGAGCGTTATGTTAAGCCGCATTTCAACGTGGAG
GACAAAGTGTGCCTGGTCACCGATCCTCGGCCGACGAGTAGCTATGACCA
GGCATACACTGTTGACTGCCTGGGCAACGTGGTTGGCGGTCGACCCGTTC
TGTATAACAATCAGTCCGTCGAACTGCTCCTTGCGGTTGTCACCAAGTCG
CTAAAGGCCGGCGAGGCCGTTTGGTTTGGCTGCGAGGTTAGCAAGCGATT
CGCCTCCAAGCAGGGCATCGAGGATGTGGATGTCCACGATTTTAAGCTGG
TCTTCGACATTGACATACAAACGACATTCTCCAAGGCAGACCGCCTGATC
TACGGTGAATCGGCCATGACCCATGCCATGGTTTTCACCGCCGTATCCGT
GGATAAGAGCGGCGTGGCCCAGAAATTGCGTGTGGAGAACTCGTGGGGTG
AGGATCGCGGCGAGAAGGGCTATCTGGTGATGAACGCCGATTGGTTTAGG
GAGTTTGGATTCGAGGTGGTCGTCGACAAGAAGTACGTGCCCGAGGATGT
GTTGCGCGTGTTCGACATGGATCCGATCGTACTGCCTGCCTGGGATCCCA
TGGGTACGCTAGCACAGTAGGTCCAGGTTGCCATCAAGACACACCCAACA
CACCTAACACACACCCAACACACACACACACACCCAACACACACACACAC
ACCCAACACACACCCAACACACACACACACATATAAAAAAACATATATTA
AAATACAATATATATAAAGCTTTACGAGCAGCAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

AT08049.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440.b 2320 CG1440.b 45..2028 1..1984 9920 100 Plus
CG1440-RC 2382 CG1440-RC 45..2028 1..1984 9920 100 Plus
CG1440-RB 1969 CG1440-RB 331..1957 358..1984 8135 100 Plus
CG1440-RB 1969 CG1440-RB 45..330 1..286 1430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8330494..8331500 1..1007 4975 99.6 Plus
chrX 22417052 chrX 8331559..8332036 1006..1483 2345 99.4 Plus
chrX 22417052 chrX 8332287..8332668 1605..1982 1715 97.7 Plus
chrX 22417052 chrX 8332103..8332223 1484..1604 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:42:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8438752..8439758 1..1007 5035 100 Plus
X 23542271 X 8439817..8440294 1006..1483 2390 100 Plus
X 23542271 X 8440545..8440924 1605..1984 1900 100 Plus
X 23542271 X 8440361..8440481 1484..1604 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8446850..8447856 1..1007 5035 100 Plus
X 23527363 X 8447915..8448392 1006..1483 2390 100 Plus
X 23527363 X 8448643..8449022 1605..1984 1900 100 Plus
X 23527363 X 8448459..8448579 1484..1604 605 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:26:15 has no hits.

AT08049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:27:23 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8330494..8331500 1..1007 99 -> Plus
chrX 8331561..8332036 1008..1483 99 -> Plus
chrX 8332103..8332223 1484..1604 100 -> Plus
chrX 8332287..8332520 1605..1838 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-12-11 16:44:06 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 1..1536 285..1820 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:27:46 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 1..1536 285..1820 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:53 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RD 1..1656 167..1820 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:40:40 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RD 1..1656 167..1820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-11 16:44:04 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 45..2026 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:27:46 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 45..2026 1..1982 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:53 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 45..2026 1..1982 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:40:40 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
CG1440-RC 45..2026 1..1982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:23 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1484..1604 100 -> Plus
X 8439819..8440294 1008..1483 100 -> Plus
X 8438752..8439758 1..1007 100 -> Plus
X 8440545..8440922 1605..1982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:23 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1484..1604 100 -> Plus
X 8439819..8440294 1008..1483 100 -> Plus
X 8438752..8439758 1..1007 100 -> Plus
X 8440545..8440922 1605..1982 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:23 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 8440361..8440481 1484..1604 100 -> Plus
X 8439819..8440294 1008..1483 100 -> Plus
X 8438752..8439758 1..1007 100 -> Plus
X 8440545..8440922 1605..1982 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:53 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8332785..8333791 1..1007 100 -> Plus
arm_X 8333852..8334327 1008..1483 100 -> Plus
arm_X 8334394..8334514 1484..1604 100 -> Plus
arm_X 8334578..8334955 1605..1982 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:13:55 Download gff for AT08049.complete
Subject Subject Range Query Range Percent Splice Strand
X 8446850..8447856 1..1007 100 -> Plus
X 8447917..8448392 1008..1483 100 -> Plus
X 8448459..8448579 1484..1604 100 -> Plus
X 8448643..8449020 1605..1982 100   Plus

AT08049.hyp Sequence

Translation from 284 to 1819

> AT08049.hyp
MYYSKESVQTHTISGERCQSHLLAADNNSGSGGGGSGGGGAGNNNSANSG
KNSTHRFAETSVITNQLLEKWRKNFYSEPKNLLAQNVCSRVDPFDVCLSR
KALETTNHVFNYKVETEGKPVTNQRSSGRCWLFAALNCIRLPFMKNYNLD
EFEFSQAFLFYWDKIERCNYFLNNVVKTAQRGEKVDGRLVSFLLLDPTSD
GGQWDMLVNLITKHGLMPKKCFPESFSCESSLRMNAILKSKLREYARNLR
VLMEKNPTDEEIACKIQEQMAEIYKVVGICLGIPSETFTWEYYDKSKNYQ
SIGPVSSLEFYERYVKPHFNVEDKVCLVTDPRPTSSYDQAYTVDCLGNVV
GGRPVLYNNQSVELLLAVVTKSLKAGEAVWFGCEVSKRFASKQGIEDVDV
HDFKLVFDIDIQTTFSKADRLIYGESAMTHAMVFTAVSVDKSGVAQKLRV
ENSWGEDRGEKGYLVMNADWFREFGFEVVVDKKYVPEDVLRVFDMDPIVL
PAWDPMGTLAQ*

AT08049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PD 551 CG1440-PD 41..551 1..511 2710 100 Plus
CG1440-PC 511 CG1440-PC 1..511 1..511 2710 100 Plus
CG1440-PA 488 CG1440-PA 2..488 25..511 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 144..511 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 62..509 725 35.4 Plus

AT08049.pep Sequence

Translation from 284 to 1819

> AT08049.pep
MYYSKESVQTHTISGERCQSHLLAADNNSGSGGGGSGGGGAGNNNSANSG
KNSTHRFAETSVITNQLLEKWRKNFYSEPKNLLAQNVCSRVDPFDVCLSR
KALETTNHVFNYKVETEGKPVTNQRSSGRCWLFAALNCIRLPFMKNYNLD
EFEFSQAFLFYWDKIERCNYFLNNVVKTAQRGEKVDGRLVSFLLLDPTSD
GGQWDMLVNLITKHGLMPKKCFPESFSCESSLRMNAILKSKLREYARNLR
VLMEKNPTDEEIACKIQEQMAEIYKVVGICLGIPSETFTWEYYDKSKNYQ
SIGPVSSLEFYERYVKPHFNVEDKVCLVTDPRPTSSYDQAYTVDCLGNVV
GGRPVLYNNQSVELLLAVVTKSLKAGEAVWFGCEVSKRFASKQGIEDVDV
HDFKLVFDIDIQTTFSKADRLIYGESAMTHAMVFTAVSVDKSGVAQKLRV
ENSWGEDRGEKGYLVMNADWFREFGFEVVVDKKYVPEDVLRVFDMDPIVL
PAWDPMGTLAQ*

AT08049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22364-PA 510 GF22364-PA 40..510 43..511 2405 94.3 Plus
Dana\GF12272-PA 521 GF12272-PA 17..474 63..486 756 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18250-PA 486 GG18250-PA 2..486 25..511 2544 96.7 Plus
Dere\GG22041-PA 475 GG22041-PA 5..473 63..509 740 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12231-PA 492 GH12231-PA 39..492 58..511 2219 89 Plus
Dgri\GH20841-PA 472 GH20841-PA 18..470 68..509 739 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1440-PD 551 CG1440-PD 41..551 1..511 2710 100 Plus
CG1440-PC 511 CG1440-PC 1..511 1..511 2710 100 Plus
CG1440-PA 488 CG1440-PA 2..488 25..511 2581 99.8 Plus
CG1440-PB 368 CG1440-PB 1..368 144..511 1944 100 Plus
CG13423-PA 476 CG13423-PA 4..474 62..509 725 35.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15765-PA 524 GI15765-PA 74..524 61..511 2338 94.7 Plus
Dmoj\GI20946-PA 486 GI20946-PA 7..484 58..509 775 33.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20308-PA 486 GL20308-PA 21..486 51..511 2307 91.2 Plus
Dper\GL17669-PA 467 GL17669-PA 5..465 63..509 730 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12954-PA 486 GA12954-PA 21..486 51..511 2310 91.2 Plus
Dpse\GA12276-PA 467 GA12276-PA 5..465 63..509 742 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21572-PA 543 GM21572-PA 41..543 1..511 2658 96.3 Plus
Dsec\GM22024-PA 476 GM22024-PA 4..474 62..509 753 35.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16898-PA 456 GD16898-PA 2..456 57..511 2437 98.7 Plus
Dsim\GD11522-PA 476 GD11522-PA 4..474 62..509 754 35.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18622-PA 510 GJ18622-PA 46..510 47..511 2328 91.2 Plus
Dvir\GJ20667-PA 482 GJ20667-PA 18..480 68..509 733 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19985-PA 518 GK19985-PA 8..518 4..511 2374 87.4 Plus
Dwil\GK20627-PA 491 GK20627-PA 2..489 41..509 771 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15781-PA 517 GE15781-PA 9..517 1..511 2669 96.3 Plus
Dyak\GE12121-PA 476 GE12121-PA 5..474 63..509 730 35 Plus