Clone AT08455 Report

Search the DGRC for AT08455

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:84
Well:55
Vector:pOTB7
Associated Gene/TranscriptRpn13-RD
Protein status:AT08455.pep: gold
Preliminary Size:1852
Sequenced Size:1531

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13349 2002-01-01 Sim4 clustering to Release 2
CG13349 2003-01-22 Blastp of sequenced clone
CG13349 2008-04-29 Release 5.5 accounting
CG13349 2008-08-15 Release 5.9 accounting
CG13349 2008-12-18 5.12 accounting

Clone Sequence Records

AT08455.complete Sequence

1531 bp (1531 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003652

> AT08455.complete
CAACAAATGTCTAAACTGAATTTTGTTCAACAGTGTTTTGAAATACTAAA
TGTTAGAATTCACCCGTTGATGGTAACACTGCTGAGCTCTCAAGAAGCAC
CCGCATCATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCAGCAACAGCA
GCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTGGGCAAGATG
GTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCAGAGTGACGA
TGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCAAGGTGGAGG
ACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGCGTCGATCAG
TGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATCGACACGCCG
CATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACGACGAGCAGT
GCCGCCGCATCAACGAGCTGCTGAACAACCCACCATCCGCCCACCAGCGC
GGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCTCAACAACAT
GTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCCAGATGGGTG
GTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCCTCGTCGCGC
AACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCAGACGCCCGA
AAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAATCGGGCAGCA
GCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGGTGCCGGCTCC
TCCGTTGATGCGGATGCCCCCGGTAAGAACTCAACCACATCGACCACAAC
GGCGTCAAAATCGACCGGAGCCTATGCCAATCCATTCCAAGCCTACTTAT
CCAATCTCTCCCCCGAACATGGCGCAGGACGATCCCTGAATATTGACCTC
TCGACGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCGATCC
GGAGCATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGATGTGG
ACGATGATCGCAAGCAGCAGATCAAGGACAATATCACCTCCCCACAGTTC
CAGCAGGCTCTGGCCCAGTTCTCCAGTGCCCTGCAATCGGCCCAGCTGGG
ACCTGTGATCAAGCAATTCGAGTTGTCCAACGAAGCAGTGGCCGCCGCCT
TCTCTGGCAATCTGGAGGATTTTGTGCGTGCTCTGGAGAAGAGTCTGCCC
CCCGGTGCCACCATGGGTGGCAAACCCTCCGCCAGCGAGAAGAAGGCCAG
CGATCCCGAAACCCCAACTTCAGTGGCCCGCGATGAGAACACAGATCCCG
CTACCGAAAAACAGGAGGAGAAGCAAAAGTAGCTTACGTGTGCGGCTTGG
TAGTCATTGATATGGAATCCGAAAGCAAATTTTTTCATGTTCTGAGTGAT
TTTTGGATGCTAAATAAATTCAAATGGGAGTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT08455.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13349-RD 1526 CG13349-RD 17..1500 1..1484 7345 99.6 Plus
CG13349-RE 1595 CG13349-RE 103..1500 87..1484 6915 99.6 Plus
CG13349-RA 1532 CG13349-RA 67..889 1..823 4100 99.8 Plus
CG13349-RA 1532 CG13349-RA 888..1445 927..1484 2730 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9845875..9846728 1482..629 4225 99.6 Minus
chr2R 21145070 chr2R 9846898..9847441 628..85 2705 99.8 Minus
chr2R 21145070 chr2R 9847649..9847734 86..1 430 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13958543..13959398 1484..629 4220 99.5 Minus
2R 25286936 2R 13959568..13960111 628..85 2705 99.8 Minus
2R 25286936 2R 13960319..13960404 86..1 430 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13959742..13960597 1484..629 4220 99.5 Minus
2R 25260384 2R 13960767..13961310 628..85 2705 99.8 Minus
2R 25260384 2R 13961518..13961603 86..1 430 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:16:36 has no hits.

AT08455.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:17:37 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9846898..9847439 87..628 99 <- Minus
chr2R 9845875..9846728 629..1482 99 <- Minus
chr2R 9847649..9847734 1..86 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:56:26 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RE 1..1275 108..1382 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:55:33 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RE 1..1275 108..1382 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:10:09 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RG 1..1275 108..1382 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:32 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RE 1..1275 108..1382 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:46 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RG 1..1275 108..1382 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:10:57 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RD 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:55:33 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RD 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:10:09 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RD 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:32 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
CG13349-RD 1..1482 1..1482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:46 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn13-RD 1..1482 1..1482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:37 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958545..13959398 629..1482 99 <- Minus
2R 13959568..13960109 87..628 99 <- Minus
2R 13960319..13960404 1..86 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:37 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958545..13959398 629..1482 99 <- Minus
2R 13959568..13960109 87..628 99 <- Minus
2R 13960319..13960404 1..86 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:37 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13958545..13959398 629..1482 99 <- Minus
2R 13959568..13960109 87..628 99 <- Minus
2R 13960319..13960404 1..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:10:09 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9846050..9846903 629..1482 99 <- Minus
arm_2R 9847073..9847614 87..628 99 <- Minus
arm_2R 9847824..9847909 1..86 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:17:41 Download gff for AT08455.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13961518..13961603 1..86 100   Minus
2R 13959744..13960597 629..1482 99 <- Minus
2R 13960767..13961308 87..628 99 <- Minus

AT08455.hyp Sequence

Translation from 107 to 1381

> AT08455.hyp
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTAS
KSTGAYANPFQAYLSNLSPEHGAGRSLNIDLSTALPGADAINQIIADPEH
VKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSAQLGPV
IKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPSASEKKASDP
ETPTSVARDENTDPATEKQEEKQK*

AT08455.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-PE 424 CG13349-PE 1..424 1..424 2181 100 Plus
Rpn13-PD 424 CG13349-PD 1..424 1..424 2181 100 Plus
Rpn13-PG 424 CG13349-PG 1..424 1..424 2181 100 Plus
Rpn13-PF 389 CG13349-PF 1..389 1..424 1955 91.7 Plus
Rpn13-PB 389 CG13349-PB 1..389 1..424 1955 91.7 Plus

AT08455.pep Sequence

Translation from 107 to 1381

> AT08455.pep
MFGRQSGLGSSSNSSNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGL
MHFCWKDRTSGKVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMF
FWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSNDGDLQYMLNNMSQ
QQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSSSGGGGASALQTPENV
SVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTAS
KSTGAYANPFQAYLSNLSPEHGAGRSLNIDLSTALPGADAINQIIADPEH
VKTLIVHLPESEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSAQLGPV
IKQFELSNEAVAAAFSGNLEDFVRALEKSLPPGATMGGKPSASEKKASDP
ETPTSVARDENTDPATEKQEEKQK*

AT08455.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11152-PA 387 GF11152-PA 1..387 1..424 1613 79.9 Plus
Dana\GF21327-PA 318 GF21327-PA 1..311 25..376 368 28.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22456-PA 389 GG22456-PA 1..389 1..424 1739 87.3 Plus
Dere\GG18742-PA 402 GG18742-PA 84..205 2..122 344 48.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22954-PA 408 GH22954-PA 1..408 1..424 1484 72.4 Plus
Dgri\GH24600-PA 108 GH24600-PA 1..93 31..123 325 54.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn13-PE 424 CG13349-PE 1..424 1..424 2181 100 Plus
Rpn13-PD 424 CG13349-PD 1..424 1..424 2181 100 Plus
Rpn13-PG 424 CG13349-PG 1..424 1..424 2181 100 Plus
Rpn13-PF 389 CG13349-PF 1..389 1..424 1955 91.7 Plus
Rpn13-PB 389 CG13349-PB 1..389 1..424 1955 91.7 Plus
Rpn13-PA 389 CG13349-PA 1..389 1..424 1955 91.7 Plus
Rpn13R-PA 324 CG6789-PA 2..315 10..379 419 31.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18444-PA 416 GI18444-PA 1..416 1..420 1366 70.7 Plus
Dmoj\GI15270-PA 203 GI15270-PA 65..187 3..122 330 44.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17076-PA 384 GL17076-PA 1..384 1..424 1577 78 Plus
Dper\GL14276-PA 204 GL14276-PA 3..134 16..137 298 43.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12224-PA 384 GA12224-PA 1..384 1..424 1567 77.8 Plus
Dpse\GA22734-PA 319 GA22734-PA 3..312 16..386 332 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20242-PA 389 GM20242-PA 1..389 1..424 1835 90.3 Plus
Dsec\GM23253-PA 389 GM23253-PA 1..389 1..424 1835 90.3 Plus
Dsec\GM12384-PA 322 GM12384-PA 2..313 10..379 406 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25728-PA 389 GD25728-PA 1..389 1..424 1787 89.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21528-PA 406 GJ21528-PA 1..406 1..424 1430 69.8 Plus
Dvir\GJ16842-PA 199 GJ16842-PA 73..180 15..122 353 53.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17850-PA 397 GK17850-PA 1..397 1..424 1518 74.1 Plus
Dwil\GK10286-PA 288 GK10286-PA 171..285 279..380 151 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13327-PA 389 GE13327-PA 1..389 1..424 1753 88 Plus
Dyak\GE16384-PA 306 GE16384-PA 2..193 10..205 346 38.4 Plus