AT08471.complete Sequence
460 bp (460 high quality bases) assembled on 2002-04-21
GenBank Submission: AY113221
> AT08471.complete
CGAAATATTTTTTCGTCCTAAGTTATTTCTTTGTTAGGTTCAAAAACTTT
ACGGAACCATCATGTGTTGCGGACCCCTTGGATTCTGCGGACCCTGTAGC
CCGTGCGGCGGTCCTTGCGGACCTTGCGGACCCTGTGGTCCTTGCGGTTC
CTGCTGTAGTCCTTGTGGATCTTGCTGTGCGCCTTGCGGCCCTTGCGGTC
CTTGCGGTCCTTGCTGCGGGGGCTGTGGTCCATGCGGGCCTTGTGGACCT
TGCTGTGGACCTTGTAGGCCATATTGCGGGTGCTGAACAACAACCACAAC
ATGTAAAATATCTTTTTCCTGTGAACCACAAAGTGGAACTTAGGACTGAA
TGCGGATAAACTCTTCTTAGCTCGCGGGCCTAGTCAATAAAATAAGAATT
TCAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
AT08471.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:15:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Db-RA | 521 | Mst84Db-RA | 69..476 | 1..408 | 2040 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 3191289..3191651 | 407..45 | 1815 | 100 | Minus |
chr3R | 27901430 | chr3R | 3191705..3191748 | 44..1 | 220 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7365159..7365522 | 408..45 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 7365576..7365619 | 44..1 | 220 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 7105990..7106353 | 408..45 | 1820 | 100 | Minus |
3R | 31820162 | 3R | 7106407..7106450 | 44..1 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 22:44:18 has no hits.
AT08471.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:45:08 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 3191289..3191481 | 215..407 | 100 | == | Minus |
chr3R | 3191589..3191651 | 45..107 | 100 | <- | Minus |
chr3R | 3191705..3191748 | 1..44 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:56:27 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 1..225 | 62..286 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:36 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 1..225 | 62..286 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:44 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 1..225 | 62..286 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:57 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 1..225 | 62..286 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:07 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 1..225 | 62..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:00 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 9..415 | 1..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:35 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 9..415 | 1..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:44 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 9..415 | 1..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:57 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 9..415 | 1..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:07 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Db-RA | 9..415 | 1..407 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:08 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7365160..7365522 | 45..407 | 100 | <- | Minus |
3R | 7365576..7365619 | 1..44 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:08 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7365160..7365522 | 45..407 | 100 | <- | Minus |
3R | 7365576..7365619 | 1..44 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:08 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7365160..7365522 | 45..407 | 100 | <- | Minus |
3R | 7365576..7365619 | 1..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:44 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3190882..3191244 | 45..407 | 100 | <- | Minus |
arm_3R | 3191298..3191341 | 1..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:10 Download gff for
AT08471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7105991..7106353 | 45..407 | 100 | <- | Minus |
3R | 7106407..7106450 | 1..44 | 100 | | Minus |
AT08471.hyp Sequence
Translation from 2 to 358
> AT08471.hyp
KYFFVLSYFFVRFKNFTEPSCVADPLDSADPVARAAVLADLADPVVLAVP
AVVLVDLAVRLAALAVLAVLAAGAVVHAGLVDLAVDLVGHIAGAEQQPQH
VKYLFPVNHKVELRTECG*
Sequence AT08471.hyp has no blast hits.
AT08471.pep Sequence
Translation from 61 to 285
> AT08471.pep
MCCGPLGFCGPCSPCGGPCGPCGPCGPCGSCCSPCGSCCAPCGPCGPCGP
CCGGCGPCGPCGPCCGPCRPYCGC*
AT08471.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Db-PA | 74 | CG17934-PA | 1..74 | 1..74 | 529 | 100 | Plus |
Mst98Cb-PA | 265 | CG18396-PA | 202..265 | 7..68 | 274 | 64.8 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 3..58 | 9..66 | 265 | 71.7 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 157..275 | 2..70 | 245 | 45.4 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 204..323 | 3..73 | 237 | 43.8 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 3..58 | 12..73 | 235 | 67.2 | Plus |
Mst84Da-PA | 63 | CG17946-PA | 15..63 | 14..65 | 231 | 67.3 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 247..334 | 3..68 | 229 | 50.6 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 3..51 | 25..73 | 228 | 71.2 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 3..51 | 25..73 | 228 | 71.2 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 9..70 | 2..65 | 224 | 61.2 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 1..53 | 1..68 | 224 | 60.9 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 1..53 | 1..68 | 224 | 60.9 | Plus |
Pif2-PA | 118 | CG31483-PA | 37..113 | 2..73 | 207 | 50.6 | Plus |
Mst84Da-PA | 63 | CG17946-PA | 13..59 | 16..74 | 205 | 62.7 | Plus |
CG9130-PB | 517 | CG9130-PB | 240..313 | 2..72 | 204 | 52.6 | Plus |
CG9130-PA | 517 | CG9130-PA | 240..313 | 2..72 | 204 | 52.6 | Plus |
Mst87F-PB | 56 | CG17956-PB | 1..56 | 1..65 | 202 | 55.9 | Plus |
Mst87F-PA | 56 | CG17956-PA | 1..56 | 1..65 | 202 | 55.9 | Plus |
Mst87F-PB | 56 | CG17956-PB | 3..52 | 19..73 | 201 | 65.5 | Plus |
Mst87F-PA | 56 | CG17956-PA | 3..52 | 19..73 | 201 | 65.5 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 2..40 | 31..73 | 178 | 70.5 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 2..40 | 31..73 | 178 | 70.5 | Plus |
Pif2-PA | 118 | CG31483-PA | 2..49 | 12..72 | 174 | 54.8 | Plus |
Mst98Ca-PA | 334 | CG11719-PA | 158..222 | 22..73 | 170 | 47.1 | Plus |
CG9130-PB | 517 | CG9130-PB | 239..290 | 14..66 | 167 | 47.6 | Plus |
CG9130-PA | 517 | CG9130-PA | 239..290 | 14..66 | 167 | 47.6 | Plus |
Mst98Cb-PA | 265 | CG18396-PA | 158..221 | 22..73 | 160 | 47.1 | Plus |
CG9130-PB | 517 | CG9130-PB | 230..290 | 25..73 | 160 | 50 | Plus |
CG9130-PA | 517 | CG9130-PA | 230..290 | 25..73 | 160 | 50 | Plus |
CG30430-PB | 51 | CG30430-PB | 3..51 | 19..65 | 150 | 61.5 | Plus |
CG30430-PA | 51 | CG30430-PA | 3..51 | 19..65 | 150 | 61.5 | Plus |
CG31740-PA | 61 | CG31740-PA | 5..60 | 1..59 | 150 | 49.2 | Plus |
CG34167-PA | 127 | CG34167-PA | 15..68 | 15..67 | 141 | 56.1 | Plus |
CG31639-PB | 58 | CG31639-PB | 6..52 | 3..67 | 138 | 43.9 | Plus |
CG31639-PA | 58 | CG31639-PA | 6..52 | 3..67 | 138 | 43.9 | Plus |
CG31740-PA | 61 | CG31740-PA | 15..60 | 23..66 | 132 | 54.2 | Plus |