Clone AT08471 Report

Search the DGRC for AT08471

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:84
Well:71
Vector:pOTB7
Associated Gene/TranscriptMst84Db-RA
Protein status:AT08471.pep: gold
Preliminary Size:398
Sequenced Size:460

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17934 2002-01-01 Sim4 clustering to Release 2
CG17934 2002-04-21 Blastp of sequenced clone
Mst84Db 2008-04-29 Release 5.5 accounting
Mst84Db 2008-08-15 Release 5.9 accounting
Mst84Db 2008-12-18 5.12 accounting

Clone Sequence Records

AT08471.complete Sequence

460 bp (460 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113221

> AT08471.complete
CGAAATATTTTTTCGTCCTAAGTTATTTCTTTGTTAGGTTCAAAAACTTT
ACGGAACCATCATGTGTTGCGGACCCCTTGGATTCTGCGGACCCTGTAGC
CCGTGCGGCGGTCCTTGCGGACCTTGCGGACCCTGTGGTCCTTGCGGTTC
CTGCTGTAGTCCTTGTGGATCTTGCTGTGCGCCTTGCGGCCCTTGCGGTC
CTTGCGGTCCTTGCTGCGGGGGCTGTGGTCCATGCGGGCCTTGTGGACCT
TGCTGTGGACCTTGTAGGCCATATTGCGGGTGCTGAACAACAACCACAAC
ATGTAAAATATCTTTTTCCTGTGAACCACAAAGTGGAACTTAGGACTGAA
TGCGGATAAACTCTTCTTAGCTCGCGGGCCTAGTCAATAAAATAAGAATT
TCAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

AT08471.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mst84Db-RA 521 Mst84Db-RA 69..476 1..408 2040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3191289..3191651 407..45 1815 100 Minus
chr3R 27901430 chr3R 3191705..3191748 44..1 220 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7365159..7365522 408..45 1820 100 Minus
3R 32079331 3R 7365576..7365619 44..1 220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7105990..7106353 408..45 1820 100 Minus
3R 31820162 3R 7106407..7106450 44..1 220 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:44:18 has no hits.

AT08471.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:45:08 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3191289..3191481 215..407 100 == Minus
chr3R 3191589..3191651 45..107 100 <- Minus
chr3R 3191705..3191748 1..44 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:56:27 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 1..225 62..286 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:36 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 1..225 62..286 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:12:44 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 1..225 62..286 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:57 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 1..225 62..286 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:07 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 1..225 62..286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:00 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 9..415 1..407 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:35 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 9..415 1..407 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:44 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 9..415 1..407 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:57 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 9..415 1..407 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:07 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
Mst84Db-RA 9..415 1..407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:08 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7365160..7365522 45..407 100 <- Minus
3R 7365576..7365619 1..44 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:08 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7365160..7365522 45..407 100 <- Minus
3R 7365576..7365619 1..44 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:45:08 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7365160..7365522 45..407 100 <- Minus
3R 7365576..7365619 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:44 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3190882..3191244 45..407 100 <- Minus
arm_3R 3191298..3191341 1..44 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:10 Download gff for AT08471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7105991..7106353 45..407 100 <- Minus
3R 7106407..7106450 1..44 100   Minus

AT08471.hyp Sequence

Translation from 2 to 358

> AT08471.hyp
KYFFVLSYFFVRFKNFTEPSCVADPLDSADPVARAAVLADLADPVVLAVP
AVVLVDLAVRLAALAVLAVLAAGAVVHAGLVDLAVDLVGHIAGAEQQPQH
VKYLFPVNHKVELRTECG*
Sequence AT08471.hyp has no blast hits.

AT08471.pep Sequence

Translation from 61 to 285

> AT08471.pep
MCCGPLGFCGPCSPCGGPCGPCGPCGPCGSCCSPCGSCCAPCGPCGPCGP
CCGGCGPCGPCGPCCGPCRPYCGC*

AT08471.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mst84Db-PA 74 CG17934-PA 1..74 1..74 529 100 Plus
Mst98Cb-PA 265 CG18396-PA 202..265 7..68 274 64.8 Plus
Mst84Dd-PA 72 CG17935-PA 3..58 9..66 265 71.7 Plus
Mst98Ca-PA 334 CG11719-PA 157..275 2..70 245 45.4 Plus
Mst98Ca-PA 334 CG11719-PA 204..323 3..73 237 43.8 Plus
Mst84Dd-PA 72 CG17935-PA 3..58 12..73 235 67.2 Plus
Mst84Da-PA 63 CG17946-PA 15..63 14..65 231 67.3 Plus
Mst98Ca-PA 334 CG11719-PA 247..334 3..68 229 50.6 Plus
Mst84Dc-PB 55 CG17945-PB 3..51 25..73 228 71.2 Plus
Mst84Dc-PA 55 CG17945-PA 3..51 25..73 228 71.2 Plus
Mst84Dd-PA 72 CG17935-PA 9..70 2..65 224 61.2 Plus
Mst84Dc-PB 55 CG17945-PB 1..53 1..68 224 60.9 Plus
Mst84Dc-PA 55 CG17945-PA 1..53 1..68 224 60.9 Plus
Pif2-PA 118 CG31483-PA 37..113 2..73 207 50.6 Plus
Mst84Da-PA 63 CG17946-PA 13..59 16..74 205 62.7 Plus
CG9130-PB 517 CG9130-PB 240..313 2..72 204 52.6 Plus
CG9130-PA 517 CG9130-PA 240..313 2..72 204 52.6 Plus
Mst87F-PB 56 CG17956-PB 1..56 1..65 202 55.9 Plus
Mst87F-PA 56 CG17956-PA 1..56 1..65 202 55.9 Plus
Mst87F-PB 56 CG17956-PB 3..52 19..73 201 65.5 Plus
Mst87F-PA 56 CG17956-PA 3..52 19..73 201 65.5 Plus
Mst84Dc-PB 55 CG17945-PB 2..40 31..73 178 70.5 Plus
Mst84Dc-PA 55 CG17945-PA 2..40 31..73 178 70.5 Plus
Pif2-PA 118 CG31483-PA 2..49 12..72 174 54.8 Plus
Mst98Ca-PA 334 CG11719-PA 158..222 22..73 170 47.1 Plus
CG9130-PB 517 CG9130-PB 239..290 14..66 167 47.6 Plus
CG9130-PA 517 CG9130-PA 239..290 14..66 167 47.6 Plus
Mst98Cb-PA 265 CG18396-PA 158..221 22..73 160 47.1 Plus
CG9130-PB 517 CG9130-PB 230..290 25..73 160 50 Plus
CG9130-PA 517 CG9130-PA 230..290 25..73 160 50 Plus
CG30430-PB 51 CG30430-PB 3..51 19..65 150 61.5 Plus
CG30430-PA 51 CG30430-PA 3..51 19..65 150 61.5 Plus
CG31740-PA 61 CG31740-PA 5..60 1..59 150 49.2 Plus
CG34167-PA 127 CG34167-PA 15..68 15..67 141 56.1 Plus
CG31639-PB 58 CG31639-PB 6..52 3..67 138 43.9 Plus
CG31639-PA 58 CG31639-PA 6..52 3..67 138 43.9 Plus
CG31740-PA 61 CG31740-PA 15..60 23..66 132 54.2 Plus