Clone AT08590 Report

Search the DGRC for AT08590

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:85
Well:90
Vector:pOTB7
Associated Gene/TranscriptCG6664-RA
Protein status:AT08590.pep: gold
Preliminary Size:2423
Sequenced Size:2705

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6664 2002-09-24 Blastp of sequenced clone
CG6664 2008-04-29 Release 5.5 accounting
CG6664 2008-08-15 Release 5.9 accounting
CG6664 2008-12-18 5.12 accounting

Clone Sequence Records

AT08590.complete Sequence

2705 bp (2705 high quality bases) assembled on 2002-09-24

GenBank Submission: BT001285

> AT08590.complete
CAAAAGTCTTTTAAGGCGAAACAGCGCACAAAAGCCAGGTAACCAAAGAT
AGAATCTGGAAAATCGGACATTTTCAGCCGGTTGAAAGGGGGAGGCGTAA
TCCCACATGTGAGTTGGAAGTCACTGGCAGTGGTGGGCTGTGGGTGGTGG
TGGTGGCGATGGCGATGGCCTGCCAGCCTGTGCAAACCCTTCCTTCGCCG
ACCTTGCCCTTCTATCGATTTCCGAAAAATTGCATCAAGCCAGATGCACA
GAAAATCACAGCTGAAGGTTAAACTTTTGCATCGGATCAGGGCCAAAACC
AAACACCACCATCGACCGATTTCTTTATTCTTTGTTCCTCACGGGGCGCA
GACGAATTCAAGAATAAAGAACAGCCAGTCGCCACATATATATGTACTCA
TGCACATATGTATAATATATATGTGCTTAAAAAGCGACTGGCATACATTA
TTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAATGGCAATGGG
CCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGAATCCGAAAG
TTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGAGC
AGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAGGTGCTGAAA
GCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAGAA
TCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCAGG
AGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCAAA
AAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGTCT
GACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTGCA
AGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGCTT
ATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACCAA
TCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGAGC
AGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGCTG
GAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCCGA
TCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCAATGGTGGCG
ATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGTG
CTTCGCTATCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGCCACTATCAA
AACACAGCAGTATGCGCAGGAAGAGAAGTCGATTCGCGAGGAAAACGCTC
GCCTTCAGCGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAAGCCCTATGC
CGGCACCTCTCCGAATCGGAATCCTCGCTGGAGATGGACGAGGAACGCTT
CTACAACGAGAACCTGATGGGAGGCGGTTCGTTCGCTGTAGCGACGGCAG
CAGCCGCCGCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAACGCACCATC
AGCAGTCCCGTCTCCCACAGTCCCTCGAGTAGCCGACCTCTAAGTCCGGG
CACGGCGGTGCAAAACCGCTGCTATGCCTGCGGCCAGCTAGTGAATCGTC
GTGCCAGCGAACGCTTCATCAAGCCAGCACTCCCAACGCCCATGCTGGGC
CTGAACACTTCCGCACCGAACGTGCTGACCTCAACCAACCCACTGCTGGG
CATTTTGGGAACCGGCAGCTCCTCATCGTCTGCGTCCGTGTCAGCTGGGA
ATGCCGCTGGCGGCTTTCTCTCGAATCTGGGAGGCGAACGCCTAAGCCTT
GGCTCGTCAAATTCGGCTGGCGGCAGTGCCACCTTCTTGGCCGGCGGTGG
AGGTGGAGGTCTGCTGGCCCAGCTCACTAGCCACTCCAGCGCTTCGTCGT
CGTCGTCCAATTTGATGAACATCAGCCTGAACAACTCGTCCAGCGGCAAT
CTTGTTAACAGCAGCAGCAACTCCTCACTGTCGGCGTTTACGCCAACCAA
TCCGCCCAGCTCGGCGGCCACGGCCTTTATCCAGCCAGCCAGTCCAATGG
ACACGTCCACCTGCAAGGACTAGGAGGATGCAGTAGCTCTCGCACAGGGA
TACAGAAAAATCATGACTTATTCACACACTTTCACACGAAAACACACTAT
ATTCATAAACACGCACGCATGCAAGCAACCAGTTTAACGATCCTAAAAAC
ATAAGAAAACACAGAAACAAAAGATGAGAAAGTAACTATCGTAAGCTTCT
CCAGGGCGACTCAAAGTCGCCACATTTATATATGGTTAATATGTATATGT
ATGTTCTATTTGATCAAAATCTCTTAAAACCTTTCAATAACGGAATTCCT
AGGCGAACGAATATTTAGCGCTAATGTTTAAGATTTGAATGTTTTTCTAA
TTTCGCTCGGTTCCAGTTAAAGTTAAGTAAAACACAGCTAATAATGAGAT
ATGGAGGATATAGAGGATGAGAATGAGGATGGACAGCACACGCTAACCAG
ATCGTATGAATTTATAAAAAGGGTGAATTCTATTCATGTCGAAACCATTT
TCACACAATTCCTTCGCATGTGGGCCTAAAAAATTTTGAAGTATGTTTAT
GTAAGCCAACAAAAATAAAGTTCAACAATTTAAAATTAAAAAAAAAAAAA
AAAAA

AT08590.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-RD 2783 CG6664-RD 97..2783 1..2687 13285 99.6 Plus
CG6664-RA 2631 CG6664-RA 437..2620 513..2696 10785 99.5 Plus
CG6664-RB 2575 CG6664-RB 385..2566 515..2696 10775 99.5 Plus
CG6664-RB 2575 CG6664-RB 277..384 1..108 540 100 Plus
CG6664-RA 2631 CG6664-RA 401..438 1..38 190 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17002324..17003362 2687..1643 5070 99.2 Minus
chr3L 24539361 chr3L 17003425..17004336 1643..732 4560 100 Minus
chr3L 24539361 chr3L 17004572..17005218 641..1 3095 98.9 Minus
chr3L 24539361 chr3L 17004419..17004509 731..641 455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17012877..17013930 2696..1643 5180 99.4 Minus
3L 28110227 3L 17013993..17014904 1643..732 4560 100 Minus
3L 28110227 3L 17015140..17015780 641..1 3130 99.2 Minus
3L 28110227 3L 17014987..17015077 731..641 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17005977..17007030 2696..1643 5180 99.4 Minus
3L 28103327 3L 17007093..17008004 1643..732 4560 100 Minus
3L 28103327 3L 17008240..17008880 641..1 3130 99.2 Minus
3L 28103327 3L 17008087..17008177 731..641 455 100 Minus
Blast to na_te.dros performed 2019-03-16 00:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2804..2961 1969..2120 126 57 Plus

AT08590.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:40:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17004419..17004509 641..731 100 <- Minus
chr3L 17003425..17004336 732..1643 100 <- Minus
chr3L 17002335..17003361 1644..2676 99 <- Minus
chr3L 17004573..17005218 1..640 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:56:39 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 1..1716 408..2123 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:55 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 1..1716 408..2123 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RB 1..1599 525..2123 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:57 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 1..1716 408..2123 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:07:48 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 1..1599 525..2123 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:36:50 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 1..2687 1..2687 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:55 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 1..2687 1..2687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 308..2482 513..2687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:58 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 1..2687 1..2687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:07:48 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 308..2482 513..2687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:40:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17012886..17013929 1644..2687 99 <- Minus
3L 17013993..17014904 732..1643 100 <- Minus
3L 17014987..17015077 641..731 100 <- Minus
3L 17015141..17015780 1..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:40:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17012886..17013929 1644..2687 99 <- Minus
3L 17013993..17014904 732..1643 100 <- Minus
3L 17014987..17015077 641..731 100 <- Minus
3L 17015141..17015780 1..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:40:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17012886..17013929 1644..2687 99 <- Minus
3L 17013993..17014904 732..1643 100 <- Minus
3L 17014987..17015077 641..731 100 <- Minus
3L 17015141..17015780 1..640 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:29 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17005986..17007029 1644..2687 99 <- Minus
arm_3L 17007093..17008004 732..1643 100 <- Minus
arm_3L 17008087..17008177 641..731 100 <- Minus
arm_3L 17008241..17008880 1..640 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:36:44 Download gff for AT08590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17005986..17007029 1644..2687 99 <- Minus
3L 17007093..17008004 732..1643 100 <- Minus
3L 17008087..17008177 641..731 100 <- Minus
3L 17008241..17008880 1..640 99   Minus

AT08590.pep Sequence

Translation from 407 to 2122

> AT08590.pep
MYNIYVLKKRLAYIISRHTYMYMLKKRNGNGPFTFSFAGMESPCESESSL
DGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKTKCKVVQEENRC
LKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTN
DLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQAETDNKQTNLE
QLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQIKLDQPVSDPT
TPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLASAQKEATIKTQ
QYAQEEKSIREENARLQRKLKQEVERREALCRHLSESESSLEMDEERFYN
ENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSPSSSRPLSPGTA
VQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNVLTSTNPLLGIL
GTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGGSATFLAGGGGG
GLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNSSLSAFTPTNPP
SSAATAFIQPASPMDTSTCKD*

AT08590.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10490-PA 536 GF10490-PA 1..536 40..571 2154 90.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15836-PA 530 GG15836-PA 1..530 40..571 2748 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17058-PA 516 GH17058-PA 1..516 40..571 1907 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PC 532 CG6664-PC 1..532 40..571 2647 100 Plus
CG6664-PB 532 CG6664-PB 1..532 40..571 2647 100 Plus
CG6664-PA 532 CG6664-PA 1..532 40..571 2647 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12063-PA 514 GI12063-PA 1..514 40..571 1953 80.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16067-PA 515 GL16067-PA 1..515 40..571 2085 87 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19762-PA 515 GA19762-PA 1..515 40..571 2082 86.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24355-PA 532 GM24355-PA 1..532 40..571 2779 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12432-PA 532 GD12432-PA 1..532 40..571 2773 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13334-PA 522 GJ13334-PA 1..522 40..571 1930 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20433-PA 532 GK20433-PA 1..532 40..571 2018 81.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22176-PA 532 GE22176-PA 1..532 40..571 2773 99.4 Plus

AT08590.hyp Sequence

Translation from 407 to 2122

> AT08590.hyp
MYNIYVLKKRLAYIISRHTYMYMLKKRNGTGPFTFSFAGMESPCESESSL
DGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKTKCKVVQEENRC
LKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTN
DLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQAETDNKQTNLE
QLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQIKLDQPVSDPT
TPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLASAQKEATIKTQ
QYAQEEKSIREENARLQRKLKQEVERREALCRHLSESESSLEMDEERFYN
ENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSPSSSRPLSPGTA
VQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNVLTSTNPLLGIL
GTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGGSATFLAGGGGG
GLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNSSLSAFTPTNPP
SSAATAFIQPASPMDTSTCKD*

AT08590.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PC 532 CG6664-PC 1..532 40..571 2647 100 Plus
CG6664-PB 532 CG6664-PB 1..532 40..571 2647 100 Plus
CG6664-PA 532 CG6664-PA 1..532 40..571 2647 100 Plus