BDGP Sequence Production Resources |
Search the DGRC for AT09084
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 90 |
Well: | 84 |
Vector: | pOTB7 |
Associated Gene/Transcript | cnn-RG |
Protein status: | AT09084.pep: gold |
Preliminary Size: | 4833 |
Sequenced Size: | 1745 |
Gene | Date | Evidence |
---|---|---|
CG4832 | 2002-09-19 | Blastp of sequenced clone |
CG4832 | 2003-01-01 | Sim4 clustering to Release 3 |
cnn | 2008-04-29 | Release 5.5 accounting |
cnn | 2008-08-15 | Release 5.9 accounting |
cnn | 2008-12-18 | 5.12 accounting |
1745 bp (1745 high quality bases) assembled on 2002-09-19
GenBank Submission: BT001287
> AT09084.complete CACACACGAGCATTAGCACATTTATTCGGCCGCACTGTTGGCGTTTTATA TTTTATATGTGGTTGCTCCCTAACGGCTAGGAGAAAGCTATAAAATCATG AATAGTAATCGAACGTCGTCTTCGCACAATTCGAGAAATCTAAAGATTCT TAATGCCAGTTTTGACGTTCCACGACCTCCAGGCGGCGGCAACTCGCCCT TGCCGTCACAGGGTCGCTCTGTACGCGAATTGGAGGAGCAGATGTCCGCG CTGCGCAAGGAGAACTTCAATCTAAAGCTGCGCATCTACTTCCTCGAGGA GGGTCAGCCGGGTGCCCGGGCAGACAGCTCCACAGAATCCTTAAGCAAAC AGCTCATCGATGCCAAGATCGAAATCGCGACATTGAGAAAAACTGTCGAT GTAAAGATGGAGCTGCTCAAGGATGCCGCTCGAGCCATTTCTCATCACGA GGAATTGCAGCGCAAAGCAGACATTGACAGCCAGGCAATAATCGACGAGT TGCAAGAGCAAATACACGCCTATCAGATGGCGGAGTCTGGTGGTCAACCT GTCGAAAATATTGCCAAAACCAGGAAAATGTTGCGCCTTGAATCGGAGGT GCAGAGATTGGAGGAGGAACTGGTGAATATCGAAGCTCGTAACGTTGCAG CCCGGAACGAGCTGGAATTCATGTTGGCCGAGCGCCTAGAATCCCTAACA GCCTGTGAGGGCAAGATTCAAGAGCTGGCCATCAAGAATTCCGAACTGGT AGAGCGTCTTGAAAAGGAAACAGCATCCGCCGAGTCATCCAACGAGGCCA TAGACTCTCTTAAGGTTGAATTAGAAGCCTGTAGGAAAGAGAATCAGGAT CTGGTGACCTCCATTCGAACCTTAAAACATGATATGAAGCGACAAGTCCG CTCGATGAAGGAGGCCGCCAATACGATGGACGTGCAGCGTCAGTCCATCC TGCTCTTGGAAGCCACAATCAAGCGCAAGGAAAAGTCGTGCGGAAGTATG CAGAAGAACGTGCTAAACTATGAGGCACTGATAGCCAAGTTAAACGCCGA ACTGGAGACTATGAGGCAACAGAATGTTTACTTCCGTGAGCTCTCCGAAA ACCTACAACAGAAGGAGGTGCGGCAACTGGATCGCGGCGTGGCCATCGTG CAGCCGATGCGCATGACGGCGGATGCCGGGCGTTTTGTGTGGCAGTCAGG GACCATCGTCGCACAAGAGCCTTTGCCATTGGAAAGGCAGTCAGCTGCAG CAACAAGCAACGTATCCGTGTCCGCAGTACGTTTATCATCAGGGCCACCA CCAGACCAGACATACCCAGTTAATGGCCATGACCGCGCCAAGTACGGCCT TCTACAACTATTCGCTGCCAAGCTTGACTGGATTTCGGCAGTTCCTTTGG CGCTGGGGCACTTAGCCCTCAAGATCATCCTCTTGGCTATGCGGTTGCAC TCCTGCCTCCAGAATGTCCATATCCCTCTTAGGGTGTCCTTTGAGCTGGG GCATTCCATGCCGTTGGCTGGCATTCTGTACTCTATTTGATCATCATTTG ATCGTTCCGCTTTCGTTGATCGTTCAAAGAAATCCAATCAAATGAATCCG ATGTTGTCCATATTCTATTAGAACAATGTTGCTCTCTCAGACGTCGACAA ATTTTTTGTTAAAGTGTATTAAATTTGCTCACATATCCCCCCGTCTGAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9330569..9331024 | 1697..1242 | 2250 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 9332094..9332467 | 526..153 | 1840 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 9331756..9332025 | 794..525 | 1320 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 9331217..9331435 | 1180..962 | 1080 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 9331503..9331671 | 962..794 | 830 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 9332540..9332691 | 152..1 | 745 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 9331074..9331146 | 1252..1180 | 335 | 97.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13443238..13443695 | 1699..1242 | 2290 | 100 | Minus |
2R | 25286936 | 2R | 13444765..13445138 | 526..153 | 1870 | 100 | Minus |
2R | 25286936 | 2R | 13444427..13444696 | 794..525 | 1350 | 100 | Minus |
2R | 25286936 | 2R | 13443888..13444106 | 1180..962 | 1095 | 100 | Minus |
2R | 25286936 | 2R | 13444174..13444342 | 962..794 | 845 | 100 | Minus |
2R | 25286936 | 2R | 13445211..13445362 | 152..1 | 760 | 100 | Minus |
2R | 25286936 | 2R | 13443745..13443817 | 1252..1180 | 335 | 97.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13444437..13444894 | 1699..1242 | 2290 | 100 | Minus |
2R | 25260384 | 2R | 13445964..13446337 | 526..153 | 1870 | 100 | Minus |
2R | 25260384 | 2R | 13445626..13445895 | 794..525 | 1350 | 100 | Minus |
2R | 25260384 | 2R | 13445087..13445305 | 1180..962 | 1095 | 100 | Minus |
2R | 25260384 | 2R | 13445373..13445541 | 962..794 | 845 | 100 | Minus |
2R | 25260384 | 2R | 13446410..13446561 | 152..1 | 760 | 100 | Minus |
2R | 25260384 | 2R | 13444944..13445016 | 1252..1180 | 335 | 97.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9330569..9331021 | 1245..1697 | 99 | <- | Minus |
chr2R | 9331082..9331145 | 1181..1244 | 100 | <- | Minus |
chr2R | 9331217..9331435 | 962..1180 | 99 | <- | Minus |
chr2R | 9331504..9331671 | 794..961 | 99 | <- | Minus |
chr2R | 9331757..9332023 | 527..793 | 99 | <- | Minus |
chr2R | 9332094..9332467 | 153..526 | 99 | <- | Minus |
chr2R | 9332540..9332691 | 1..152 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RC | 1..1389 | 98..1489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RG | 1..1443 | 98..1540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RG | 1..1443 | 98..1540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RC | 1..1389 | 98..1489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RG | 1..1443 | 98..1540 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RC | 13..1498 | 1..1489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RG | 1..1697 | 1..1697 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RG | 13..1709 | 1..1697 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RC | 13..1498 | 1..1489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cnn-RG | 13..1709 | 1..1697 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13443240..13443692 | 1245..1697 | 100 | <- | Minus |
2R | 13443753..13443816 | 1181..1244 | 100 | <- | Minus |
2R | 13443888..13444106 | 962..1180 | 100 | <- | Minus |
2R | 13444175..13444342 | 794..961 | 100 | <- | Minus |
2R | 13444428..13444694 | 527..793 | 100 | <- | Minus |
2R | 13444765..13445138 | 153..526 | 100 | <- | Minus |
2R | 13445211..13445362 | 1..152 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13443240..13443692 | 1245..1697 | 100 | <- | Minus |
2R | 13443753..13443816 | 1181..1244 | 100 | <- | Minus |
2R | 13443888..13444106 | 962..1180 | 100 | <- | Minus |
2R | 13444175..13444342 | 794..961 | 100 | <- | Minus |
2R | 13444428..13444694 | 527..793 | 100 | <- | Minus |
2R | 13444765..13445138 | 153..526 | 100 | <- | Minus |
2R | 13445211..13445362 | 1..152 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13443240..13443692 | 1245..1697 | 100 | <- | Minus |
2R | 13443753..13443816 | 1181..1244 | 100 | <- | Minus |
2R | 13443888..13444106 | 962..1180 | 100 | <- | Minus |
2R | 13444175..13444342 | 794..961 | 100 | <- | Minus |
2R | 13444428..13444694 | 527..793 | 100 | <- | Minus |
2R | 13444765..13445138 | 153..526 | 100 | <- | Minus |
2R | 13445211..13445362 | 1..152 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9332716..9332867 | 1..152 | 100 | Minus | |
arm_2R | 9330745..9331197 | 1245..1697 | 100 | <- | Minus |
arm_2R | 9331258..9331321 | 1181..1244 | 100 | <- | Minus |
arm_2R | 9331393..9331611 | 962..1180 | 100 | <- | Minus |
arm_2R | 9331680..9331847 | 794..961 | 100 | <- | Minus |
arm_2R | 9331933..9332199 | 527..793 | 100 | <- | Minus |
arm_2R | 9332270..9332643 | 153..526 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13444439..13444891 | 1245..1697 | 100 | <- | Minus |
2R | 13444952..13445015 | 1181..1244 | 100 | <- | Minus |
2R | 13445087..13445305 | 962..1180 | 100 | <- | Minus |
2R | 13445374..13445541 | 794..961 | 100 | <- | Minus |
2R | 13445627..13445893 | 527..793 | 100 | <- | Minus |
2R | 13445964..13446337 | 153..526 | 100 | <- | Minus |
2R | 13446410..13446561 | 1..152 | 100 | Minus |
Translation from 97 to 1539
> AT09084.pep MNSNRTSSSHNSRNLKILNASFDVPRPPGGGNSPLPSQGRSVRELEEQMS ALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIEIATLRKTV DVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQMAESGGQ PVENIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESL TACEGKIQELAIKNSELVERLEKETASAESSNEAIDSLKVELEACRKENQ DLVTSIRTLKHDMKRQVRSMKEAANTMDVQRQSILLLEATIKRKEKSCGS MQKNVLNYEALIAKLNAELETMRQQNVYFRELSENLQQKEVRQLDRGVAI VQPMRMTADAGRFVWQSGTIVAQEPLPLERQSAAATSNVSVSAVRLSSGP PPDQTYPVNGHDRAKYGLLQLFAAKLDWISAVPLALGHLALKIILLAMRL HSCLQNVHIPLRVSFELGHSMPLAGILYSI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11185-PA | 1125 | GF11185-PA | 52..263 | 20..232 | 735 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22491-PA | 1348 | GG22491-PA | 50..496 | 20..468 | 1951 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23115-PA | 1276 | GH23115-PA | 86..414 | 22..354 | 586 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cnn-PG | 480 | CG4832-PG | 1..480 | 1..480 | 2373 | 100 | Plus |
cnn-PI | 500 | CG4832-PI | 1..500 | 1..480 | 2342 | 96 | Plus |
cnn-PJ | 1320 | CG4832-PJ | 1..468 | 1..468 | 2293 | 99.1 | Plus |
cnn-PL | 1378 | CG4832-PL | 78..526 | 20..468 | 2198 | 99.1 | Plus |
cnn-PH | 462 | CG4832-PH | 1..389 | 1..399 | 1770 | 92 | Plus |
cnn-PK | 520 | CG4832-PK | 78..447 | 20..399 | 1675 | 91.6 | Plus |
cnn-PD | 1090 | CG4832-PD | 1..350 | 1..348 | 1159 | 71.2 | Plus |
cnn-PN | 1120 | CG4832-PN | 50..380 | 20..348 | 1064 | 69.6 | Plus |
cnn-PM | 1120 | CG4832-PM | 50..380 | 20..348 | 1064 | 69.6 | Plus |
cnn-PB | 1120 | CG4832-PB | 50..380 | 20..348 | 1064 | 69.6 | Plus |
cnn-PA | 1148 | CG4832-PA | 78..408 | 20..348 | 1064 | 69.6 | Plus |
cnn-PE | 1130 | CG4832-PE | 50..390 | 20..348 | 1062 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18938-PA | 1270 | GI18938-PA | 81..422 | 20..357 | 680 | 45.1 | Plus |
Dmoj\GI15815-PA | 468 | GI15815-PA | 37..126 | 39..136 | 167 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17401-PA | 915 | GL17401-PA | 78..291 | 20..232 | 545 | 55.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18464-PA | 1323 | GA18464-PA | 78..294 | 20..235 | 546 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20278-PA | 1294 | GM20278-PA | 78..526 | 20..468 | 2158 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25761-PA | 1361 | GD25761-PA | 50..491 | 20..461 | 2141 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21311-PA | 1126 | GJ21311-PA | 82..290 | 21..225 | 550 | 57.8 | Plus |
Dvir\GJ18667-PA | 254 | GJ18667-PA | 28..205 | 38..223 | 241 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10742-PA | 1453 | GK10742-PA | 80..421 | 20..349 | 761 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13363-PA | 1350 | GE13363-PA | 50..498 | 20..468 | 1919 | 82.5 | Plus |
Translation from 97 to 1539
> AT09084.hyp MNSNRTSSSHNSRNLKILNASFDVPRPPGGGNSPLPSQGRSVRELEEQMS ALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIEIATLRKTV DVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQMAESGGQ PVENIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESL TACEGKIQELAIKNSELVERLEKETASAESSNEAIDSLKVELEACRKENQ DLVTSIRTLKHDMKRQVRSMKEAANTMDVQRQSILLLEATIKRKEKSCGS MQKNVLNYEALIAKLNAELETMRQQNVYFRELSENLQQKEVRQLDRGVAI VQPMRMTADAGRFVWQSGTIVAQEPLPLERQSAAATSNVSVSAVRLSSGP PPDQTYPVNGHDRAKYGLLQLFAAKLDWISAVPLALGHLALKIILLAMRL HSCLQNVHIPLRVSFELGHSMPLAGILYSI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cnn-PG | 480 | CG4832-PG | 1..480 | 1..480 | 2373 | 100 | Plus |
cnn-PI | 500 | CG4832-PI | 1..500 | 1..480 | 2342 | 96 | Plus |
cnn-PJ | 1320 | CG4832-PJ | 1..468 | 1..468 | 2293 | 99.1 | Plus |
cnn-PL | 1378 | CG4832-PL | 78..526 | 20..468 | 2198 | 99.1 | Plus |
cnn-PH | 462 | CG4832-PH | 1..389 | 1..399 | 1770 | 92 | Plus |