Clone AT09084 Report

Search the DGRC for AT09084

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:90
Well:84
Vector:pOTB7
Associated Gene/Transcriptcnn-RG
Protein status:AT09084.pep: gold
Preliminary Size:4833
Sequenced Size:1745

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4832 2002-09-19 Blastp of sequenced clone
CG4832 2003-01-01 Sim4 clustering to Release 3
cnn 2008-04-29 Release 5.5 accounting
cnn 2008-08-15 Release 5.9 accounting
cnn 2008-12-18 5.12 accounting

Clone Sequence Records

AT09084.complete Sequence

1745 bp (1745 high quality bases) assembled on 2002-09-19

GenBank Submission: BT001287

> AT09084.complete
CACACACGAGCATTAGCACATTTATTCGGCCGCACTGTTGGCGTTTTATA
TTTTATATGTGGTTGCTCCCTAACGGCTAGGAGAAAGCTATAAAATCATG
AATAGTAATCGAACGTCGTCTTCGCACAATTCGAGAAATCTAAAGATTCT
TAATGCCAGTTTTGACGTTCCACGACCTCCAGGCGGCGGCAACTCGCCCT
TGCCGTCACAGGGTCGCTCTGTACGCGAATTGGAGGAGCAGATGTCCGCG
CTGCGCAAGGAGAACTTCAATCTAAAGCTGCGCATCTACTTCCTCGAGGA
GGGTCAGCCGGGTGCCCGGGCAGACAGCTCCACAGAATCCTTAAGCAAAC
AGCTCATCGATGCCAAGATCGAAATCGCGACATTGAGAAAAACTGTCGAT
GTAAAGATGGAGCTGCTCAAGGATGCCGCTCGAGCCATTTCTCATCACGA
GGAATTGCAGCGCAAAGCAGACATTGACAGCCAGGCAATAATCGACGAGT
TGCAAGAGCAAATACACGCCTATCAGATGGCGGAGTCTGGTGGTCAACCT
GTCGAAAATATTGCCAAAACCAGGAAAATGTTGCGCCTTGAATCGGAGGT
GCAGAGATTGGAGGAGGAACTGGTGAATATCGAAGCTCGTAACGTTGCAG
CCCGGAACGAGCTGGAATTCATGTTGGCCGAGCGCCTAGAATCCCTAACA
GCCTGTGAGGGCAAGATTCAAGAGCTGGCCATCAAGAATTCCGAACTGGT
AGAGCGTCTTGAAAAGGAAACAGCATCCGCCGAGTCATCCAACGAGGCCA
TAGACTCTCTTAAGGTTGAATTAGAAGCCTGTAGGAAAGAGAATCAGGAT
CTGGTGACCTCCATTCGAACCTTAAAACATGATATGAAGCGACAAGTCCG
CTCGATGAAGGAGGCCGCCAATACGATGGACGTGCAGCGTCAGTCCATCC
TGCTCTTGGAAGCCACAATCAAGCGCAAGGAAAAGTCGTGCGGAAGTATG
CAGAAGAACGTGCTAAACTATGAGGCACTGATAGCCAAGTTAAACGCCGA
ACTGGAGACTATGAGGCAACAGAATGTTTACTTCCGTGAGCTCTCCGAAA
ACCTACAACAGAAGGAGGTGCGGCAACTGGATCGCGGCGTGGCCATCGTG
CAGCCGATGCGCATGACGGCGGATGCCGGGCGTTTTGTGTGGCAGTCAGG
GACCATCGTCGCACAAGAGCCTTTGCCATTGGAAAGGCAGTCAGCTGCAG
CAACAAGCAACGTATCCGTGTCCGCAGTACGTTTATCATCAGGGCCACCA
CCAGACCAGACATACCCAGTTAATGGCCATGACCGCGCCAAGTACGGCCT
TCTACAACTATTCGCTGCCAAGCTTGACTGGATTTCGGCAGTTCCTTTGG
CGCTGGGGCACTTAGCCCTCAAGATCATCCTCTTGGCTATGCGGTTGCAC
TCCTGCCTCCAGAATGTCCATATCCCTCTTAGGGTGTCCTTTGAGCTGGG
GCATTCCATGCCGTTGGCTGGCATTCTGTACTCTATTTGATCATCATTTG
ATCGTTCCGCTTTCGTTGATCGTTCAAAGAAATCCAATCAAATGAATCCG
ATGTTGTCCATATTCTATTAGAACAATGTTGCTCTCTCAGACGTCGACAA
ATTTTTTGTTAAAGTGTATTAAATTTGCTCACATATCCCCCCGTCTGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT09084.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
cnn-RG 1707 cnn-RG 9..1707 1..1699 8495 100 Plus
cnn-RC 4830 cnn-RC 13..1496 1..1484 7420 100 Plus
cnn-RD 4154 cnn-RD 27..820 1..794 3970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9330569..9331024 1697..1242 2250 99.6 Minus
chr2R 21145070 chr2R 9332094..9332467 526..153 1840 99.5 Minus
chr2R 21145070 chr2R 9331756..9332025 794..525 1320 99.3 Minus
chr2R 21145070 chr2R 9331217..9331435 1180..962 1080 99.5 Minus
chr2R 21145070 chr2R 9331503..9331671 962..794 830 99.4 Minus
chr2R 21145070 chr2R 9332540..9332691 152..1 745 99.3 Minus
chr2R 21145070 chr2R 9331074..9331146 1252..1180 335 97.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13443238..13443695 1699..1242 2290 100 Minus
2R 25286936 2R 13444765..13445138 526..153 1870 100 Minus
2R 25286936 2R 13444427..13444696 794..525 1350 100 Minus
2R 25286936 2R 13443888..13444106 1180..962 1095 100 Minus
2R 25286936 2R 13444174..13444342 962..794 845 100 Minus
2R 25286936 2R 13445211..13445362 152..1 760 100 Minus
2R 25286936 2R 13443745..13443817 1252..1180 335 97.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13444437..13444894 1699..1242 2290 100 Minus
2R 25260384 2R 13445964..13446337 526..153 1870 100 Minus
2R 25260384 2R 13445626..13445895 794..525 1350 100 Minus
2R 25260384 2R 13445087..13445305 1180..962 1095 100 Minus
2R 25260384 2R 13445373..13445541 962..794 845 100 Minus
2R 25260384 2R 13446410..13446561 152..1 760 100 Minus
2R 25260384 2R 13444944..13445016 1252..1180 335 97.2 Minus
Blast to na_te.dros performed on 2019-03-15 19:02:30 has no hits.

AT09084.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:03:38 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9330569..9331021 1245..1697 99 <- Minus
chr2R 9331082..9331145 1181..1244 100 <- Minus
chr2R 9331217..9331435 962..1180 99 <- Minus
chr2R 9331504..9331671 794..961 99 <- Minus
chr2R 9331757..9332023 527..793 99 <- Minus
chr2R 9332094..9332467 153..526 99 <- Minus
chr2R 9332540..9332691 1..152 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:57:01 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RC 1..1389 98..1489 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:37 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RG 1..1443 98..1540 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:39:51 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RG 1..1443 98..1540 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:36 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RC 1..1389 98..1489 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:13 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RG 1..1443 98..1540 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:37:49 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RC 13..1498 1..1489 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:37 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RG 1..1697 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:39:51 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RG 13..1709 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:36 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RC 13..1498 1..1489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:13 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
cnn-RG 13..1709 1..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:38 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13443240..13443692 1245..1697 100 <- Minus
2R 13443753..13443816 1181..1244 100 <- Minus
2R 13443888..13444106 962..1180 100 <- Minus
2R 13444175..13444342 794..961 100 <- Minus
2R 13444428..13444694 527..793 100 <- Minus
2R 13444765..13445138 153..526 100 <- Minus
2R 13445211..13445362 1..152 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:38 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13443240..13443692 1245..1697 100 <- Minus
2R 13443753..13443816 1181..1244 100 <- Minus
2R 13443888..13444106 962..1180 100 <- Minus
2R 13444175..13444342 794..961 100 <- Minus
2R 13444428..13444694 527..793 100 <- Minus
2R 13444765..13445138 153..526 100 <- Minus
2R 13445211..13445362 1..152 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:38 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13443240..13443692 1245..1697 100 <- Minus
2R 13443753..13443816 1181..1244 100 <- Minus
2R 13443888..13444106 962..1180 100 <- Minus
2R 13444175..13444342 794..961 100 <- Minus
2R 13444428..13444694 527..793 100 <- Minus
2R 13444765..13445138 153..526 100 <- Minus
2R 13445211..13445362 1..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:39:51 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9332716..9332867 1..152 100   Minus
arm_2R 9330745..9331197 1245..1697 100 <- Minus
arm_2R 9331258..9331321 1181..1244 100 <- Minus
arm_2R 9331393..9331611 962..1180 100 <- Minus
arm_2R 9331680..9331847 794..961 100 <- Minus
arm_2R 9331933..9332199 527..793 100 <- Minus
arm_2R 9332270..9332643 153..526 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:28 Download gff for AT09084.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13444439..13444891 1245..1697 100 <- Minus
2R 13444952..13445015 1181..1244 100 <- Minus
2R 13445087..13445305 962..1180 100 <- Minus
2R 13445374..13445541 794..961 100 <- Minus
2R 13445627..13445893 527..793 100 <- Minus
2R 13445964..13446337 153..526 100 <- Minus
2R 13446410..13446561 1..152 100   Minus

AT09084.pep Sequence

Translation from 97 to 1539

> AT09084.pep
MNSNRTSSSHNSRNLKILNASFDVPRPPGGGNSPLPSQGRSVRELEEQMS
ALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIEIATLRKTV
DVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQMAESGGQ
PVENIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESL
TACEGKIQELAIKNSELVERLEKETASAESSNEAIDSLKVELEACRKENQ
DLVTSIRTLKHDMKRQVRSMKEAANTMDVQRQSILLLEATIKRKEKSCGS
MQKNVLNYEALIAKLNAELETMRQQNVYFRELSENLQQKEVRQLDRGVAI
VQPMRMTADAGRFVWQSGTIVAQEPLPLERQSAAATSNVSVSAVRLSSGP
PPDQTYPVNGHDRAKYGLLQLFAAKLDWISAVPLALGHLALKIILLAMRL
HSCLQNVHIPLRVSFELGHSMPLAGILYSI*

AT09084.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11185-PA 1125 GF11185-PA 52..263 20..232 735 67.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22491-PA 1348 GG22491-PA 50..496 20..468 1951 83.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23115-PA 1276 GH23115-PA 86..414 22..354 586 42.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
cnn-PG 480 CG4832-PG 1..480 1..480 2373 100 Plus
cnn-PI 500 CG4832-PI 1..500 1..480 2342 96 Plus
cnn-PJ 1320 CG4832-PJ 1..468 1..468 2293 99.1 Plus
cnn-PL 1378 CG4832-PL 78..526 20..468 2198 99.1 Plus
cnn-PH 462 CG4832-PH 1..389 1..399 1770 92 Plus
cnn-PK 520 CG4832-PK 78..447 20..399 1675 91.6 Plus
cnn-PD 1090 CG4832-PD 1..350 1..348 1159 71.2 Plus
cnn-PN 1120 CG4832-PN 50..380 20..348 1064 69.6 Plus
cnn-PM 1120 CG4832-PM 50..380 20..348 1064 69.6 Plus
cnn-PB 1120 CG4832-PB 50..380 20..348 1064 69.6 Plus
cnn-PA 1148 CG4832-PA 78..408 20..348 1064 69.6 Plus
cnn-PE 1130 CG4832-PE 50..390 20..348 1062 68.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18938-PA 1270 GI18938-PA 81..422 20..357 680 45.1 Plus
Dmoj\GI15815-PA 468 GI15815-PA 37..126 39..136 167 41.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17401-PA 915 GL17401-PA 78..291 20..232 545 55.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18464-PA 1323 GA18464-PA 78..294 20..235 546 54.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20278-PA 1294 GM20278-PA 78..526 20..468 2158 90.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25761-PA 1361 GD25761-PA 50..491 20..461 2141 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21311-PA 1126 GJ21311-PA 82..290 21..225 550 57.8 Plus
Dvir\GJ18667-PA 254 GJ18667-PA 28..205 38..223 241 38 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10742-PA 1453 GK10742-PA 80..421 20..349 761 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13363-PA 1350 GE13363-PA 50..498 20..468 1919 82.5 Plus

AT09084.hyp Sequence

Translation from 97 to 1539

> AT09084.hyp
MNSNRTSSSHNSRNLKILNASFDVPRPPGGGNSPLPSQGRSVRELEEQMS
ALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIEIATLRKTV
DVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAYQMAESGGQ
PVENIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFMLAERLESL
TACEGKIQELAIKNSELVERLEKETASAESSNEAIDSLKVELEACRKENQ
DLVTSIRTLKHDMKRQVRSMKEAANTMDVQRQSILLLEATIKRKEKSCGS
MQKNVLNYEALIAKLNAELETMRQQNVYFRELSENLQQKEVRQLDRGVAI
VQPMRMTADAGRFVWQSGTIVAQEPLPLERQSAAATSNVSVSAVRLSSGP
PPDQTYPVNGHDRAKYGLLQLFAAKLDWISAVPLALGHLALKIILLAMRL
HSCLQNVHIPLRVSFELGHSMPLAGILYSI*

AT09084.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
cnn-PG 480 CG4832-PG 1..480 1..480 2373 100 Plus
cnn-PI 500 CG4832-PI 1..500 1..480 2342 96 Plus
cnn-PJ 1320 CG4832-PJ 1..468 1..468 2293 99.1 Plus
cnn-PL 1378 CG4832-PL 78..526 20..468 2198 99.1 Plus
cnn-PH 462 CG4832-PH 1..389 1..399 1770 92 Plus