Clone AT09129 Report

Search the DGRC for AT09129

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:91
Well:29
Vector:pOTB7
Associated Gene/TranscriptDer-2-RA
Protein status:AT09129.pep: gold
Preliminary Size:994
Sequenced Size:1520

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14899 2002-01-01 Sim4 clustering to Release 2
CG14899 2002-03-20 Blastp of sequenced clone
CG14899 2003-01-01 Sim4 clustering to Release 3
CG14899 2008-04-29 Release 5.5 accounting
CG14899 2008-08-15 Release 5.9 accounting
CG14899 2008-12-18 5.12 accounting

Clone Sequence Records

AT09129.complete Sequence

1520 bp (1520 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094643

> AT09129.complete
AACTACTCTTCGATAGACGACACAATCTTAAGTTCTTCCTTCTGTTAACC
ACATAAATAAAATTAATTTAAAGTTTCGTGTCACGATTACGGCTTATCGA
TATCTGGCGCCAGTGTCACTAGTATTTGTACCATCACTAACCTTGGTCAT
AAAAATAAAAGCTAGCGTTCCATTTATTTTCCATCGCCCGAGCGCTGTTC
CCTATCCATTAACACGTCTCAATCCTGGAGTGCACAACATCCGGTGAGAG
GACTACCAAAAAGAGATAGTCCGCCGCTGGTTGTAGGTGAATAAACAGTG
AAGAAGCGAAGAGTCCAAAGGATACAATCGCAACCCACTTGCCAAGCTGC
ACACTTTGAGTCCAACGTTGGAGGAGGAGCCGCCATGAATGCCCTGCGGC
AGTTCTACCTGGAGATCCCGGTGGTCACACGAGCCTACACCACGGTCTGC
GTGCTGACCACCTTGGCGGTGCACCTGGACCTGGTGTCGCCGCTGCAGCT
CTACTTCAATCCCACGCTGATTGTGCGCAAGTTCCAGATCTGGCGCTTGG
CCACCACATTCCTGTACTTTGGCACAATAGGCATCAGTTTCTTTTTCAAT
ATGGTGTTTACATATCGATATTGTCGAATGTTGGAGGACGGATCTTTCCG
CGGACGCAGCTCCGACTTTGTCATGATGTTCATCTTTGGCGGCGTGCTAA
TGACCTTCTTCGGAATCTTCGTCAACCTGTTGTTCCTGGGCCAGGCCTTC
ACATTAATGCTGGTCTATGTGTGGTCACGACGCAATCCACTGGTGCCAAT
GAATTTCTTCGGGGTGCTTAACTTCCAGGCGCCGTACCTTCCGTGGGTGC
TCCTCTGCTGCTCCATGATTCTGGGAAACACCGTGTGGGTGGATGTCATC
GGCATGGGTGTTGGCCACATCTACTACGTGCTGGAGGACGTCTATCCTAC
ACTGTCCAACGGCTACAGACTGATCAAAACCCCCTACTTTTTGAAACGTC
TCTTCAATGAGCACATCGAACGCAACTTCCAGGCGGCTGCTGAGGATCGA
CCTGGCGGATTTCCTTGGGGCGGAGAGGGTCAGCCCCTGCTACCGGAAGA
GATTGCGGCTGATGGACAGGATGAGGAGCCAGCGAATCGAGCGGCGCCTG
TTGCTGCCGCGCCGCAATAGCAAAACTAGAAAACTTGATTGTTAAAACGT
TCTTCTGTTCAAAACGACGACGATGACAACAATGTTGTGTACCCTCCGCC
ACCTTCTGTTTGGTGCTTGGTGTAATTAGGCGTATAGTATTGAGAGAAAG
GCGTGCAATAGTTAGCCAAAGTTGGTGCAGAGCGTGTGTGTATGTCATTT
ATTGGTTTGTTTTCTGAAACAGAGCTCATTTTCCATACGAGATGTTCTTT
TATTTATAATTTACCCCCAAGGGATGAATCCACGACAGATTGAACCTACA
CTGCACATGTGATTATATATATACAAACCATGCCACAAATAAATCATTAT
ATAAAAAAAAAAAAAAAAAA

AT09129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14899-RA 1579 CG14899-RA 66..1575 1..1507 7465 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12307937..12308459 993..471 2615 100 Minus
chr3R 27901430 chr3R 12307372..12307881 1502..993 2550 100 Minus
chr3R 27901430 chr3R 12308543..12309013 471..1 2355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16483262..16483784 993..471 2615 100 Minus
3R 32079331 3R 16482689..16483206 1507..993 2495 99.2 Minus
3R 32079331 3R 16483868..16484338 471..1 2355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16224093..16224615 993..471 2615 100 Minus
3R 31820162 3R 16223520..16224037 1507..993 2505 99.2 Minus
3R 31820162 3R 16224699..16225169 471..1 2355 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:11:36 has no hits.

AT09129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:12:29 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12307372..12307881 993..1502 100 <- Minus
chr3R 12307938..12308458 472..992 100 <- Minus
chr3R 12308543..12309013 1..471 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:57:08 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 1..786 385..1170 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:27:21 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 1..786 385..1170 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:55:12 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 1..786 385..1170 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:13 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 1..786 385..1170 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:20 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 1..786 385..1170 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:53:57 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 66..1570 1..1502 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:27:20 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 66..1570 1..1502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:12 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 1..1390 116..1502 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:02:13 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
CG14899-RA 66..1570 1..1502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:20 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
Der-2-RA 1..1390 116..1502 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:29 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16482694..16483206 993..1502 99 <- Minus
3R 16483263..16483783 472..992 100 <- Minus
3R 16483868..16484338 1..471 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:29 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16482694..16483206 993..1502 99 <- Minus
3R 16483263..16483783 472..992 100 <- Minus
3R 16483868..16484338 1..471 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:29 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16482694..16483206 993..1502 99 <- Minus
3R 16483263..16483783 472..992 100 <- Minus
3R 16483868..16484338 1..471 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:12 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12308416..12308928 993..1502 99 <- Minus
arm_3R 12308985..12309505 472..992 100 <- Minus
arm_3R 12309590..12310060 1..471 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:35:30 Download gff for AT09129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16223525..16224037 993..1502 99 <- Minus
3R 16224094..16224614 472..992 100 <- Minus
3R 16224699..16225169 1..471 100   Minus

AT09129.hyp Sequence

Translation from 384 to 1169

> AT09129.hyp
MNALRQFYLEIPVVTRAYTTVCVLTTLAVHLDLVSPLQLYFNPTLIVRKF
QIWRLATTFLYFGTIGISFFFNMVFTYRYCRMLEDGSFRGRSSDFVMMFI
FGGVLMTFFGIFVNLLFLGQAFTLMLVYVWSRRNPLVPMNFFGVLNFQAP
YLPWVLLCCSMILGNTVWVDVIGMGVGHIYYVLEDVYPTLSNGYRLIKTP
YFLKRLFNEHIERNFQAAAEDRPGGFPWGGEGQPLLPEEIAADGQDEEPA
NRAAPVAAAPQ*

AT09129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-PA 261 CG14899-PA 1..261 1..261 1391 100 Plus
Der-1-PB 245 CG10908-PB 6..233 7..248 268 29.4 Plus
Der-1-PA 245 CG10908-PA 6..233 7..248 268 29.4 Plus

AT09129.pep Sequence

Translation from 384 to 1169

> AT09129.pep
MNALRQFYLEIPVVTRAYTTVCVLTTLAVHLDLVSPLQLYFNPTLIVRKF
QIWRLATTFLYFGTIGISFFFNMVFTYRYCRMLEDGSFRGRSSDFVMMFI
FGGVLMTFFGIFVNLLFLGQAFTLMLVYVWSRRNPLVPMNFFGVLNFQAP
YLPWVLLCCSMILGNTVWVDVIGMGVGHIYYVLEDVYPTLSNGYRLIKTP
YFLKRLFNEHIERNFQAAAEDRPGGFPWGGEGQPLLPEEIAADGQDEEPA
NRAAPVAAAPQ*

AT09129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16510-PA 257 GF16510-PA 1..254 1..255 1249 93.3 Plus
Dana\GF14591-PA 245 GF14591-PA 6..207 7..206 237 29.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19906-PA 261 GG19906-PA 1..261 1..261 1342 97.7 Plus
Dere\GG24816-PA 245 GG24816-PA 6..207 7..206 242 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19287-PA 259 GH19287-PA 1..243 1..243 1196 92.2 Plus
Dgri\GH25208-PA 246 GH25208-PA 6..236 7..253 252 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
Der-2-PA 261 CG14899-PA 1..261 1..261 1391 100 Plus
Der-1-PB 245 CG10908-PB 6..233 7..248 268 29.4 Plus
Der-1-PA 245 CG10908-PA 6..233 7..248 268 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23500-PA 259 GI23500-PA 1..245 1..245 1207 91.8 Plus
Dmoj\GI17281-PA 245 GI17281-PA 6..235 7..250 252 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21648-PA 131 GL21648-PA 10..131 137..261 477 79.2 Plus
Dper\GL21646-PA 91 GL21646-PA 1..83 1..83 424 98.8 Plus
Dper\GL19666-PA 243 GL19666-PA 5..207 6..206 221 30.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26359-PA 258 GA26359-PA 1..258 1..261 1176 92 Plus
Dpse\GA10631-PA 243 GA10631-PA 5..207 6..206 225 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15426-PA 261 GM15426-PA 1..261 1..261 1365 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20283-PA 324 GD20283-PA 1..248 1..248 1304 98.8 Plus
Dsim\GD23120-PA 245 GD23120-PA 6..207 7..206 240 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10254-PA 256 GJ10254-PA 1..255 1..258 1223 89.9 Plus
Dvir\GJ22875-PA 246 GJ22875-PA 6..206 7..205 243 29.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11211-PA 259 GK11211-PA 1..257 1..255 1205 89.1 Plus
Dwil\GK24195-PA 247 GK24195-PA 6..236 6..251 255 28.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26308-PA 261 GE26308-PA 1..261 1..261 1352 98.5 Plus
Dyak\GE17801-PA 245 GE17801-PA 6..207 7..206 239 29.1 Plus