Clone AT09144 Report

Search the DGRC for AT09144

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:91
Well:44
Vector:pOTB7
Associated Gene/TranscriptCG13843-RA
Protein status:AT09144.pep: gold
Preliminary Size:1089
Sequenced Size:1196

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13843 2002-01-01 Sim4 clustering to Release 2
CG13843 2003-01-01 Sim4 clustering to Release 3
CG13843 2008-04-29 Release 5.5 accounting
CG13843 2008-08-15 Release 5.9 accounting
CG13843 2008-12-18 5.12 accounting

Clone Sequence Records

AT09144.complete Sequence

1196 bp (1196 high quality bases) assembled on 2005-08-10

GenBank Submission: BT023875

> AT09144.complete
CAAAAAGTATTTGGTTTTAGAGCTAAGTTTTCAAATTTTCCATTATAATG
ATTGCCAAGCTAAAGCAGGAATATGCGGAGCGCTGGCATTATCCTCCAAT
TGTGCCGCCAGCCAAGCTTCGATATGTTGCATGTGGAAAGGTAGCATTCT
ACGGCCACAACGATAAGCCGAAATACAAGCCCTGCTGGCAGCATCCGCTC
AATGTGCAGGATCAAACCCGCTTTGGAGTTTGCTGGGAGTATCCGCCGGA
GCGGTACAAGCGTCGTCCGCTTCCGCCACCGTGCCGGGGATCGACCATTC
CCATCCATTTGCTGAAGCCAACCTTCAAGCATTGTGAGAATATCTACTCC
CGCTACGATTTTAAGCTTGAGCAGTGTGTGCACGAGCAAACTCTAGTAGT
TGACCAGAAAATGAAGGCCCTGAAGAATGAGCTGGAGCAGGCCAAACCAT
TTCAGATTGAGAGGGTTAAGGAGATGCGTTATCATGGAGTGCGTTATCGC
ATTTTAGCCAGCTCGACCGGATGCACTAAGACCTATCCCGAGTACATAAG
CCGGATGACCGAAGAGCGGGCCCTTTGCGAGTTTCAGAGAGCCTACAATA
TCGTCAATCAGTCAAACACCGATTTGAGCAATTTATACCTGGACATGAGT
GAGTCAAAAAAGGAGCTAGATCAACGCGTAGCCAGGTTGGACCGGTCTTT
AGGAAGTACATTCTTGAAAGAGCTAGATTCGGTGCTGCAAATAATCGAGG
ACTTAAACACGTATTTTTTTGGCGTGATCGTGAAGCTAAAGACGTGGGCG
GAGCTGATGGACCCTATGAAAGAGCACTCTATAGAGGACTATCTGGGGCT
ATTGAGTCAGGAAACAGACTTCCGGACTTTCATGAGTGCCGGCATGGAAA
ACTGCACCTGCAAGCGTTGCGACAAGAAGGATCCCTTGAAGCCGTACCTT
CCGTGCTGGTGTCAAATGGAATCTAGCGAGGATGTTACAAATCTTAAGAA
TTTTGACGACGATTGTCCAAAGAACATAGCTGGCATCACGCAACACGAAA
GTGACATTGTGACACCTAGTGACACCTCCTTGTTAGTGAGGGCAGCGGAT
GAAAAGGCAAGGCTTGCGATGAATCAGGCGGAATAAAGTCTCATTATTAT
TGGTTAATAAAGTCAATTGTAAATTGGAAAAAAAAAAAAAAAAAAA

AT09144.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13843-RA 1183 CG13843-RA 7..1183 1..1177 5690 98.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18433034..18433649 1..616 3065 99.8 Plus
chr3R 27901430 chr3R 18433698..18434258 617..1177 2565 97.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22609491..22610106 1..616 3050 99.7 Plus
3R 32079331 3R 22610155..22610716 617..1178 2645 98 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22350322..22350937 1..616 3050 99.6 Plus
3R 31820162 3R 22350986..22351547 617..1178 2645 98 Plus
Blast to na_te.dros performed on 2019-03-15 17:46:47 has no hits.

AT09144.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:47:56 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18433034..18433649 1..616 99 -> Plus
chr3R 18433698..18434258 617..1177 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:57:11 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 1..1089 48..1136 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:02 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 1..1089 48..1136 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:42 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 1..1089 48..1136 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:42 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 1..1089 48..1136 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:17 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 1..1089 48..1136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:30:59 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 7..1165 1..1159 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:01 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 7..1183 1..1177 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:42 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 7..1183 1..1177 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:42 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 7..1165 1..1159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:17 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
CG13843-RA 7..1183 1..1177 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:56 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22609491..22610106 1..616 99 -> Plus
3R 22610155..22610715 617..1177 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:56 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22609491..22610106 1..616 99 -> Plus
3R 22610155..22610715 617..1177 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:56 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22609491..22610106 1..616 99 -> Plus
3R 22610155..22610715 617..1177 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:42 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18435213..18435828 1..616 99 -> Plus
arm_3R 18435877..18436437 617..1177 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:17 Download gff for AT09144.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22350322..22350937 1..616 99 -> Plus
3R 22350986..22351546 617..1177 98   Plus

AT09144.pep Sequence

Translation from 47 to 1135

> AT09144.pep
MIAKLKQEYAERWHYPPIVPPAKLRYVACGKVAFYGHNDKPKYKPCWQHP
LNVQDQTRFGVCWEYPPERYKRRPLPPPCRGSTIPIHLLKPTFKHCENIY
SRYDFKLEQCVHEQTLVVDQKMKALKNELEQAKPFQIERVKEMRYHGVRY
RILASSTGCTKTYPEYISRMTEERALCEFQRAYNIVNQSNTDLSNLYLDM
SESKKELDQRVARLDRSLGSTFLKELDSVLQIIEDLNTYFFGVIVKLKTW
AELMDPMKEHSIEDYLGLLSQETDFRTFMSAGMENCTCKRCDKKDPLKPY
LPCWCQMESSEDVTNLKNFDDDCPKNIAGITQHESDIVTPSDTSLLVRAA
DEKARLAMNQAE*

AT09144.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18863-PA 367 GF18863-PA 1..351 1..347 1145 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11150-PA 366 GG11150-PA 1..360 1..360 1784 90.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22459-PA 363 GH22459-PA 7..353 2..346 878 48.3 Plus
Dgri\GH10791-PA 235 GH10791-PA 61..208 149..288 160 28.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13843-PA 362 CG13843-PA 1..362 1..362 1958 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22246-PA 490 GI22246-PA 314..435 185..306 286 43.4 Plus
Dmoj\GI17302-PA 236 GI17302-PA 61..231 149..314 162 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13748-PA 361 GL13748-PA 7..357 2..350 1024 56.5 Plus
Dper\GL25964-PA 254 GL25964-PA 64..249 131..317 149 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12565-PA 361 GA12565-PA 7..357 2..350 1028 56.8 Plus
Dpse\GA16557-PA 254 GA16557-PA 64..249 131..317 151 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26449-PA 362 GM26449-PA 1..362 1..362 1889 95.6 Plus
Dsec\GM13880-PA 262 GM13880-PA 87..257 149..317 157 27 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20967-PA 362 GD20967-PA 1..362 1..362 1896 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23052-PA 356 GJ23052-PA 3..305 2..306 906 53.3 Plus
Dvir\GJ15702-PA 236 GJ15702-PA 61..208 149..288 155 31.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19185-PA 357 GK19185-PA 7..324 2..321 999 56.2 Plus
Dwil\GK24215-PA 239 GK24215-PA 64..220 149..297 149 25.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10316-PA 362 GE10316-PA 1..361 1..361 1750 87.8 Plus

AT09144.hyp Sequence

Translation from 47 to 1135

> AT09144.hyp
MIAKLKQEYAERWHYPPIVPPAKLRYVACGKVAFYGHNDKPKYKPCWQHP
LNVQDQTRFGVCWEYPPERYKRRPLPPPCRGSTIPIHLLKPTFKHCENIY
SRYDFKLEQCVHEQTLVVDQKMKALKNELEQAKPFQIERVKEMRYHGVRY
RILASSTGCTKTYPEYISRMTEERALCEFQRAYNIVNQSNTDLSNLYLDM
SESKKELDQRVARLDRSLGSTFLKELDSVLQIIEDLNTYFFGVIVKLKTW
AELMDPMKEHSIEDYLGLLSQETDFRTFMSAGMENCTCKRCDKKDPLKPY
LPCWCQMESSEDVTNLKNFDDDCPKNIAGITQHESDIVTPSDTSLLVRAA
DEKARLAMNQAE*

AT09144.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13843-PA 362 CG13843-PA 1..362 1..362 1958 100 Plus