Clone AT09308 Report

Search the DGRC for AT09308

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:93
Well:8
Vector:pOTB7
Associated Gene/TranscriptCG15547-RA
Protein status:AT09308.pep: gold
Preliminary Size:1277
Sequenced Size:1627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15547 2002-09-24 Blastp of sequenced clone
CG15547 2008-04-29 Release 5.5 accounting
CG15547 2008-08-15 Release 5.9 accounting
CG15547 2008-12-18 5.12 accounting

Clone Sequence Records

AT09308.complete Sequence

1627 bp (1627 high quality bases) assembled on 2002-09-24

GenBank Submission: BT001288

> AT09308.complete
CGAACATTGATCTTATAAATCATACAGAAAACTTAAACCGACATAGTAGC
ACATTATTGAAAATTCCCAATTCCCCTTGGAATAGTATATATTTTCTAGC
CGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGGACTATCTGCACA
AGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGCTTCCAGATTCAG
GGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGCCGAGTTCTATGC
CGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCATTCTGCTTTCGA
AGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAACGCCGTGCAGGAG
CTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATCGGATCTGGAACG
CAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTCGTGAGATAAACT
TTATTTTTCCCAACTATATTCACGAGCCCCATCAAATGTTCGACCACAAC
AACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGAGGAGATCTACGA
CATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGAAGGTGCGTGTTT
CCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAAATCAGCAACCAG
TGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATCGCAGCAGACCAC
CATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGCAGCCGGGAGTCA
AGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACATCCCCGCATTCC
TCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGGAGGCTTCGAAAG
ATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGCGCGTAGAACCTC
ATGACGAGGAGCCAGTCTGTGTGGACGAGGAGATTTTGTGGAAGGAAGTT
ATTGTCTACGAGGAAATCCAACCGGAGGCTGAGGAGCAGGAGTCCAAGGA
GGACCTGCACGACCTGGAGGAGGAAGGCGTAGGCGAGTCTGGGGGCTCAG
ATGCGGAGTCAGACCGAAGTGTTCATGAAGCTCCACCGCCACCAGCTCAA
GATGACGAGTCCGAAGAGGGTGACGCTGCTGCTGGGGAGCCAGGCGAAAC
TGCTCCCGCTCCTGAAGTGGCTCCTCCTGCCCAAGAGGCTACTGCTGCGC
CTGAAGTCCCTGCAGTGGCTGAAGAACATCCTCACGCAGCAGAAGCTCCC
GCAGAGGAAGCTCCACCAGGGGAATAAGTTTGTTTCACTAGTACACCTGT
TGCCCCCATCATTTGTTTGGCGAAGCATAGAAAAAATGGACTAAAATGCG
CGCAATTTTTGCATCACCAGCCATTGCACCCGTTGAACCACCTTAAACTG
GCAATTGCGCACTCGCAGAATTTTGGGAGGAGGGTTTAAAATGCTGGTCC
TGCAGTTCTTTATTTGCCCCTAAAAAGTGCATCCCACACGGCAGGAAAAT
CAACAGGAGCAACAGCTTTTTAGCCTCCAATTTGCCGCTGGCCAAATGGC
AAAGTTTTTTCGCCCCTTTCAAGTGTCCAATAAAAAAAATCGTTGTAAAT
TAAAAAAAAAAAAAAAAAAAAAAAAAA

AT09308.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547.b 2022 CG15547.b 450..2022 1..1573 7865 100 Plus
CG15547-RA 1284 CG15547-RA 1..1284 1..1284 6420 100 Plus
CG15547.a 1733 CG15547.a 450..1733 1..1284 6420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26704264..26705399 1601..466 5680 100 Minus
chr3R 27901430 chr3R 26705600..26705975 376..1 1850 99.5 Minus
chr3R 27901430 chr3R 26705455..26705543 465..377 445 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30881784..30882927 1609..466 5705 99.9 Minus
3R 32079331 3R 30883128..30883503 376..1 1880 100 Minus
3R 32079331 3R 30882983..30883071 465..377 445 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30622615..30623758 1609..466 5705 99.9 Minus
3R 31820162 3R 30623959..30624334 376..1 1880 100 Minus
3R 31820162 3R 30623814..30623902 465..377 445 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:49:32 has no hits.

AT09308.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:50:26 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26704264..26705399 466..1601 100 <- Minus
chr3R 26705455..26705543 377..465 100 <- Minus
chr3R 26705600..26705975 1..376 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:57:19 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 105..1277 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:57 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 105..1277 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:47:32 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 105..1277 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:59 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 105..1277 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:11 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 105..1277 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:36:52 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1277 1..1277 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:56 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1601 1..1601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:32 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1601 1..1601 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:59 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1277 1..1277 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:11 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1601 1..1601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:26 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30883128..30883503 1..376 100   Minus
3R 30881792..30882927 466..1601 100 <- Minus
3R 30882983..30883071 377..465 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:26 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30883128..30883503 1..376 100   Minus
3R 30881792..30882927 466..1601 100 <- Minus
3R 30882983..30883071 377..465 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:26 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30883128..30883503 1..376 100   Minus
3R 30881792..30882927 466..1601 100 <- Minus
3R 30882983..30883071 377..465 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:32 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26707514..26708649 466..1601 100 <- Minus
arm_3R 26708705..26708793 377..465 100 <- Minus
arm_3R 26708850..26709225 1..376 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:36:45 Download gff for AT09308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30622623..30623758 466..1601 100 <- Minus
3R 30623814..30623902 377..465 100 <- Minus
3R 30623959..30624334 1..376 100   Minus

AT09308.hyp Sequence

Translation from 2 to 1276

> AT09308.hyp
NIDLINHTENLNRHSSTLLKIPNSPWNSIYFLADMFENSLFIIKPDYLHK
RRPVLLKLLAEGFQIQGNRRIAFSPETAAEFYADYADEKGFMLEVILLSK
GVSEAFIVTKENAVQELLNIMICYFGSASDLERNIHVTKNSYSVAREINF
IFPNYIHEPHQMFDHNNFCNRPMLKPLLEEIYDIMQNTDCSQENWKVRVS
DYLVRSNPKMPEISNQCQQRPDVAIQDKSQQTTMTYAPKPSARAAQPGVK
KTQSSSAPLSTTSPHSSMLLSSSSCVTCGGFERSQPGISDLDLNKRVEPH
DEEPVCVDEEILWKEVIVYEEIQPEAEEQESKEDLHDLEEEGVGESGGSD
AESDRSVHEAPPPPAQDDESEEGDAAAGEPGETAPAPEVAPPAQEATAAP
EVPAVAEEHPHAAEAPAEEAPPGE*

AT09308.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 390 CG15547-PA 1..390 35..424 2041 100 Plus

AT09308.pep Sequence

Translation from 104 to 1276

> AT09308.pep
MFENSLFIIKPDYLHKRRPVLLKLLAEGFQIQGNRRIAFSPETAAEFYAD
YADEKGFMLEVILLSKGVSEAFIVTKENAVQELLNIMICYFGSASDLERN
IHVTKNSYSVAREINFIFPNYIHEPHQMFDHNNFCNRPMLKPLLEEIYDI
MQNTDCSQENWKVRVSDYLVRSNPKMPEISNQCQQRPDVAIQDKSQQTTM
TYAPKPSARAAQPGVKKTQSSSAPLSTTSPHSSMLLSSSSCVTCGGFERS
QPGISDLDLNKRVEPHDEEPVCVDEEILWKEVIVYEEIQPEAEEQESKED
LHDLEEEGVGESGGSDAESDRSVHEAPPPPAQDDESEEGDAAAGEPGETA
PAPEVAPPAQEATAAPEVPAVAEEHPHAAEAPAEEAPPGE*

AT09308.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23307-PA 372 GF23307-PA 1..322 1..324 1315 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11905-PA 390 GG11905-PA 1..347 1..347 1695 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14091-PA 446 GH14091-PA 3..279 1..280 1091 70.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 390 CG15547-PA 1..390 1..390 2041 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10624-PA 405 GI10624-PA 2..339 1..346 1088 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13983-PA 369 GL13983-PA 1..279 1..280 1083 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13804-PA 369 GA13804-PA 1..279 1..280 1083 75.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12123-PA 390 GM12123-PA 1..377 1..377 1804 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16785-PA 390 GD16785-PA 1..377 1..377 1760 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22976-PA 413 GJ22976-PA 1..345 1..357 1105 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13105-PA 440 GK13105-PA 1..330 1..327 1188 69.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23353-PA 402 GE23353-PA 1..341 1..341 1659 92.7 Plus