Clone AT09333 Report

Search the DGRC for AT09333

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:93
Well:33
Vector:pOTB7
Associated Gene/TranscriptCG8712-RA
Protein status:AT09333.pep: gold
Preliminary Size:1329
Sequenced Size:1497

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8712 2002-01-01 Sim4 clustering to Release 2
CG8712 2003-01-01 Sim4 clustering to Release 3
CG8712 2003-02-13 Blastp of sequenced clone
CG8712 2008-04-29 Release 5.5 accounting
CG8712 2008-08-15 Release 5.9 accounting
CG8712 2008-12-18 5.12 accounting

Clone Sequence Records

AT09333.complete Sequence

1497 bp (1497 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003806

> AT09333.complete
GTCAAACAGACATTTAAATACAATTTTTAGTTATTTTTATCGTTGCCTTT
TACAGACAAAGAAAATTTTGTTCAGACTTTTATAAGACTTATGCCGGCAC
TTACCCACCAAATCTTAACCATGCAACGCGCACCACCACTGAATTTGAGC
TTCAAGATTCAGCTGCTGTCCGGCCAAAATGTTATCCTGGTGGAGTGTTC
TGGCTACGAGAGCGAGCTGTTCTTGCCGCAAATCGTTGGGGAGCGAATCA
CCATGCAGAACGTTATTCAAGATCGAAGGTGCTGTGCAGAGAGCATGTTG
TTGCGGGATCCCCCGATGGGCGATTTGGGCTCCGAAACCAGGACTGCGAA
GAGTCCTCCACGGCGCTTCTTTGCCGCTGCCAATCCCCCAACCCCACTGG
CCAAGAGCACCCCGACGAATACATCTTCTTTAAGAGCTCGGGCTGGTAAG
GAAAACGCTGTTCCGCAGCTAACGCCAGAGGGTTTGCGATGCCGACCCTT
TCACCTACCTGCACCGGTGGAAATGGACGTAGACCAATTGTGCTGCCAGG
AGCAGACACCTGAGAGACGGGCATCCTCCAAGTCTATAAGTTCAGCTAAT
ACAAATAATAGTTTTTTTGAGAATGAGGTATCACAGCCAGTAATTTCAAG
CAAGAACGTCTATGCCAACGAATCGGCCCGTAACAACATTACGCCCTCAA
GCATCTATGAGACTGGGATCTCACCGCCAGTCTTGCCGAGAGAGAATCTA
ACCGAGCAGAACCACCAAGCGATGGAACTCGCCATCAACAAGACTAAGCC
CAAATTGACCGCCGTACGGACATATACTCGTAAACGAGTGGAAACCGCCA
GCAAAGCAAAGGCCACACCAGTGTGGTCTCCTCTTCAGAAGAAGAAAAAG
AGCTCGTGGGTATCATCCACCAAGGTGCCGTCTCCCACCATGAAGGTGGA
AGTGCGTAATCGCAAACTGATAGTTGACACCAAAAAGACGCTAGCTGTCC
ATGATCCTAGAAAATTGTCTTCGGGGTCCATCACAATGAAGAAAATAATA
AGGAAGCAAGTGACGGGAAAGACACGAAAGCAATTTGAAGCCCTCAAAGT
CACAGCCTTTGACTTATTAACCAATTTGTGTGTGGCCAACATTTCCGACG
ATCTAACCAAGCAATTCCAGAAAGCCTGTGCGAACAGGGTGTGCACTACC
TTGCCCAATTACGCAGAGATCGCAGTTGTCCCGCCGCTGGAAATGGATCG
CGAGGTGAATGCGCTGATGGCCAGGCAGAAGCGGATGGAAAGGGAGACCC
ATAGGCGATGGAGCGCAGTGCCACCAGAAGGCAATCCAGTTTAAAGGGCC
AAAGACATATTTTTTTTTTTTGGAAGATCTCGATGTATTTGTTCTGGCAT
CCAGTCAGTAATCCAAATGCATGTATGCTCTTGTCATTTAGATTAAACAT
AGAATAAAACGAGTAACGGGTATAATAAAAAAAAAAAAAAAAAAAAA

AT09333.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-RB 1518 CG8712-RB 45..1518 1..1476 7310 99.7 Plus
CG8712-RA 1670 CG8712-RA 106..1526 55..1477 7045 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3984377..3985850 1476..1 7315 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:43:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8096936..8098410 1477..1 7305 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8098135..8099609 1477..1 7315 99.7 Minus
Blast to na_te.dros performed 2019-03-16 04:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1470..1518 1389..1341 119 71.4 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4129..4169 1083..1042 117 78.6 Minus

AT09333.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:56:04 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3984377..3985850 1..1476 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:57:22 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 1..1254 91..1344 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:57 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 1..1254 91..1344 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:09 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 1..1254 91..1344 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:03 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 1..1254 91..1344 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:52 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RA 1..1254 91..1344 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:10 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 45..1518 1..1476 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:56 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 45..1518 1..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:09 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 75..1548 1..1476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:03 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 45..1518 1..1476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:52 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
CG8712-RB 75..1548 1..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:04 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8096937..8098410 1..1476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:04 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8096937..8098410 1..1476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:04 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8096937..8098410 1..1476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:09 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3984442..3985915 1..1476 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:54 Download gff for AT09333.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8098136..8099609 1..1476 99   Minus

AT09333.hyp Sequence

Translation from 90 to 1343

> AT09333.hyp
MPALTHQILTMQRAPPLNLSFKIQLLSGQNVILVECSGYESELFLPQIVG
ERITMQNVIQDRRCCAESMLLRDPPMGDLGSETRTAKSPPRRFFAAANPP
TPLAKSTPTNTSSLRARAGKENAVPQLTPEGLRCRPFHLPAPVEMDVDQL
CCQEQTPERRASSKSISSANTNNSFFENEVSQPVISSKNVYANESARNNI
TPSSIYETGISPPVLPRENLTEQNHQAMELAINKTKPKLTAVRTYTRKRV
ETASKAKATPVWSPLQKKKKSSWVSSTKVPSPTMKVEVRNRKLIVDTKKT
LAVHDPRKLSSGSITMKKIIRKQVTGKTRKQFEALKVTAFDLLTNLCVAN
ISDDLTKQFQKACANRVCTTLPNYAEIAVVPPLEMDREVNALMARQKRME
RETHRRWSAVPPEGNPV*

AT09333.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-PB 417 CG8712-PB 1..417 1..417 2141 100 Plus
CG8712-PA 417 CG8712-PA 1..417 1..417 2141 100 Plus

AT09333.pep Sequence

Translation from 90 to 1343

> AT09333.pep
MPALTHQILTMQRAPPLNLSFKIQLLSGQNVILVECSGYESELFLPQIVG
ERITMQNVIQDRRCCAESMLLRDPPMGDLGSETRTAKSPPRRFFAAANPP
TPLAKSTPTNTSSLRARAGKENAVPQLTPEGLRCRPFHLPAPVEMDVDQL
CCQEQTPERRASSKSISSANTNNSFFENEVSQPVISSKNVYANESARNNI
TPSSIYETGISPPVLPRENLTEQNHQAMELAINKTKPKLTAVRTYTRKRV
ETASKAKATPVWSPLQKKKKSSWVSSTKVPSPTMKVEVRNRKLIVDTKKT
LAVHDPRKLSSGSITMKKIIRKQVTGKTRKQFEALKVTAFDLLTNLCVAN
ISDDLTKQFQKACANRVCTTLPNYAEIAVVPPLEMDREVNALMARQKRME
RETHRRWSAVPPEGNPV*

AT09333.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11214-PA 378 GF11214-PA 1..363 11..402 821 47.7 Plus
Dana\GF10676-PA 257 GF10676-PA 3..76 20..92 149 43.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10679-PA 410 GG10679-PA 1..408 11..415 1464 74.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19990-PA 386 GH19990-PA 10..371 19..402 576 39.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8712-PB 417 CG8712-PB 1..417 1..417 2141 100 Plus
CG8712-PA 417 CG8712-PA 1..417 1..417 2141 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20165-PA 405 GI20165-PA 251..391 263..402 366 53.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17384-PA 402 GL17384-PA 12..389 1..400 596 37 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24810-PA 402 GA24810-PA 12..389 1..400 584 36.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20726-PA 410 GM20726-PA 1..409 11..416 1793 88.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10192-PA 410 GD10192-PA 1..409 11..416 1802 87.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20229-PA 384 GJ20229-PA 6..376 15..409 593 37.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19221-PA 370 GK19221-PA 7..359 13..401 553 38.9 Plus
Dwil\GK15291-PA 366 GK15291-PA 1..365 9..407 510 39.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23334-PA 410 GE23334-PA 1..408 11..415 1544 74 Plus