Clone AT09701 Report

Search the DGRC for AT09701

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:97
Well:1
Vector:pOTB7
Associated Gene/TranscriptCG12054-RB
Protein status:AT09701.pep: gold
Preliminary Size:3128
Sequenced Size:2277

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12054 2002-09-19 Blastp of sequenced clone
CG12054 2008-04-29 Release 5.5 accounting
CG12054 2008-08-15 Release 5.9 accounting
CG12054 2008-12-18 5.12 accounting

Clone Sequence Records

AT09701.complete Sequence

2277 bp (2277 high quality bases) assembled on 2002-09-19

GenBank Submission: BT001290

> AT09701.complete
TAGATATCTGACTTTGGCACACGTATACCTTGTCATCTGGGGATTTAAGT
TGCCCATCTAATAATCGATTAGCTGGTTTTAAACTAACTGCAGTGACACA
ATCATTTGTGAGATCCGCAGCTGATCGATGCTTGTTATTTTATCGTTTAG
CAGCCCCTCGTTAACTGCAACTGCAATCGCATGACGAATGTACAGGGTGC
CCGGTGGCGAATATGATGAATGGCCCGGCTGACACAGTTACGCACCAAAA
CGATTTAATTGGGAAATAAAGCGTGCTCATGGAGGTTATGTTGTGCGCAC
ACACATGGATCGAGAAGTGAATAAAGACGGCGAAGGGGACAAACCGAGGA
GGGGCACCTGTTATTATGCACTCGCTGATTAAGCAAGCTTTGGGCTTATG
CTTGTTCTGGCGATAAGATAAAGTACCCACGCCGCAGACCATGTGCTCCT
CCTGGTACTCCGTCGCAGTACCAGATCGAAGCCCCCATAAACCCCGTGGA
AAATGCGTCAGCAGGCGCACTAAATCCGTCGCCATTCCGTACCCCACTAT
GACCCAAAGGTGGTCGAACAGAAGGAGCAGGCCCAGCCTGCCTGCCTGCC
CTTAAGTTATGTCCTGCGCTTCATCACCGAGGAGAACCGCAAGGAGGCGG
GCTCGTTCCTGGCCAGCAACACAACAGCCCCACCGACCACCAATAGCGGA
TCCAATGCAGCTGGCCACGGGAATGGCAATGTGGAGCTCAAGCGAAAGCT
GGCCATCAAGCACCACAGTTACAGTATGTCCTCGTCCAACCGCAGCACCA
CGCCAACAGGCAGCGAAATGGACGAGGACGAAATGGTGGTCACGGAGTCG
GAGGATAGCAACGACTCCTGGACCACCGAGGAGTTTAGCTCGGAGTTTAT
CATGCGCTACGGCAGCAGGCATTCCGGTGGTGGAAGCAATGGCACGCCCG
GCAATGAGAAACCCTTCGCCTGCCCTGTTCCGGGATGCAAAAAACGTTAC
AAGAACGTCAACGGCATCAAGTACCATTCGAAGAACGGTCACAAAAAGGA
CGGAAGAGTGCGCAAGGGCTACAAGTGTCACTGCGGTAAGAGTTACAAAA
CGGCCCAGGGCCTGAAGAACCACGCGCTGCACACACACAACTCGCAGCCG
GATAGTGTGCTGAATGCCCAGCTGGCCAATGCGTTGGCCATAGGCGATGG
GGCCAGCGCGGCCACGCCTGTGGGCAGCAGCAACACCTCCTCCAATCCGA
ACCCGCCGCCCATCATTCAGCGCAGCAACTCGCCGTCTCAGTCGCTGGGC
TCGTTGAGTCCGTCGAGCATCAGCAACATGTCGAGCAGCGCCAGCAGTTG
CCATGGAGGCAGCGGCAGTCTGTCGAACGGGAATAATGGCAACAATGGGA
GCACTACTAGCAACACTGCCATTCTCACTAGCAACGGGAATGTCCTGCAG
CAGCTCAGTGCCGGGAATGTGGTCACCCTGACCAATCTTCCCACGCAACA
GCATCAGCAGCAACAGCCGCAGCCGCAACAGCAGCAGCAGCAGCAACTCC
ATCAAAACACTGCAACAGAAACCTCTTACTCCTGCTCAAACAACAGCAAC
CTCAGCAATCCCAACAGTAACCACGGCAGCAGCGATTCCAGCAAGCCGCC
CACGACTCTCCTGTCCGTTAACAAGAGGTCCACAGCAATCGCTTCAGCGA
AACTGCCAACCACCGGCAATTCCCTGCCCATGCAGATCTCACCCAACTTC
ATTGAGCACAAGTATTCCGCGCTGGACATGAAGGAGAAGTTCTTCTTGAA
TCTGAGGGCCGGCAAAGCGGTGGCCAGTTCACAGGGAGCCGATAGAATGG
GCTCACCAATGGGACACCAATCGGATGTTGGCATTTCCGGCGGATCAGGA
GCAGGCGGTGGCTTGCGGGCGGTTGCTGTGGGTCAAATGTGCGCGCTGCA
AAACGAGCACATTCACCAAAATCTCTTCAAGAAAACGATCAACTGATCGG
CATATCGGATGAGAAGGCAAGAGAGTTGGCTGTGATGAAGTAGTAACTAA
CTGACTAACAAACCTGACAAGAGGCGGAGAAAGAGGATTCGTCAATAAGG
CAGATGGGAAAAGGATGCAGAAGCTGCAGCAATTAATGAAGGAGGGATAA
GTGAGGGAGTTGGGCGCCGCCCTACGGTCCTTAGAGAAGTTTTCCAAGAC
AAGGCAACAAGAAGCAAGAAGCAAGAATTTCCATTGGCTTCCAAAACACC
ACAAAATGCAAAAAAAAAAAAAAAAAA

AT09701.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-RB 2277 CG12054-RB 1..2277 1..2277 11235 99.5 Plus
CG12054.c 2505 CG12054.c 70..1092 546..1568 5070 99.7 Plus
CG12054-RA 3275 CG12054-RA 711..1733 546..1568 5070 99.7 Plus
CG12054.c 2505 CG12054.c 1..69 248..316 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27051076..27051769 1566..2259 3470 100 Plus
chr3R 27901430 chr3R 27047303..27047847 1..545 2680 99.4 Plus
chr3R 27901430 chr3R 27048951..27049464 1055..1568 2555 99.8 Plus
chr3R 27901430 chr3R 27048199..27048463 546..810 1325 100 Plus
chr3R 27901430 chr3R 27048750..27048889 917..1056 685 99.3 Plus
chr3R 27901430 chr3R 27048525..27048636 808..919 560 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:44:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31228694..31229405 1566..2277 3545 99.9 Plus
3R 32079331 3R 31224917..31225461 1..545 2635 98.9 Plus
3R 32079331 3R 31226565..31227078 1055..1568 2540 99.6 Plus
3R 32079331 3R 31225813..31226077 546..810 1325 100 Plus
3R 32079331 3R 31226364..31226503 917..1056 685 99.3 Plus
3R 32079331 3R 31226139..31226250 808..919 560 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30969525..30970236 1566..2277 3545 99.8 Plus
3R 31820162 3R 30965748..30966292 1..545 2635 98.8 Plus
3R 31820162 3R 30967396..30967909 1055..1568 2540 99.6 Plus
3R 31820162 3R 30966644..30966908 546..810 1325 100 Plus
3R 31820162 3R 30967195..30967334 917..1056 685 99.2 Plus
3R 31820162 3R 30966970..30967081 808..919 560 100 Plus
Blast to na_te.dros performed 2019-03-15 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2533 1495..1718 285 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2549 1316..1536 196 58.1 Plus

AT09701.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:35:04 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27047303..27047847 1..545 99 -> Plus
chr3R 27048199..27048462 546..809 100 -> Plus
chr3R 27048527..27048635 810..918 100 -> Plus
chr3R 27048752..27048889 919..1056 99 -> Plus
chr3R 27048953..27049390 1057..1494 99 == Plus
chr3R 27049442..27049464 1546..1568 100 -> Plus
chr3R 27051079..27051769 1569..2259 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:57:56 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..1221 776..1996 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:40 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..1221 776..1996 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:01 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RE 98..1551 540..1996 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:38 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..1221 776..1996 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:38:20 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RE 98..1551 540..1996 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:37:52 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:39 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:01 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:40 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..2259 1..2259 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:20 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
CG12054-RB 1..2259 1..2259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:04 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31224917..31225461 1..545 98 -> Plus
3R 31225813..31226076 546..809 100 -> Plus
3R 31226141..31226249 810..918 100 -> Plus
3R 31226366..31226503 919..1056 99 -> Plus
3R 31226567..31227078 1057..1568 99 -> Plus
3R 31228697..31229387 1569..2259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:04 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31224917..31225461 1..545 98 -> Plus
3R 31225813..31226076 546..809 100 -> Plus
3R 31226141..31226249 810..918 100 -> Plus
3R 31226366..31226503 919..1056 99 -> Plus
3R 31226567..31227078 1057..1568 99 -> Plus
3R 31228697..31229387 1569..2259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:04 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31224917..31225461 1..545 98 -> Plus
3R 31225813..31226076 546..809 100 -> Plus
3R 31226141..31226249 810..918 100 -> Plus
3R 31226366..31226503 919..1056 99 -> Plus
3R 31226567..31227078 1057..1568 99 -> Plus
3R 31228697..31229387 1569..2259 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:01 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27050639..27051183 1..545 98 -> Plus
arm_3R 27051535..27051798 546..809 100 -> Plus
arm_3R 27051863..27051971 810..918 100 -> Plus
arm_3R 27052088..27052225 919..1056 99 -> Plus
arm_3R 27052289..27052800 1057..1568 99 -> Plus
arm_3R 27054419..27055109 1569..2259 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:31 Download gff for AT09701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30965748..30966292 1..545 98 -> Plus
3R 30966644..30966907 546..809 100 -> Plus
3R 30966972..30967080 810..918 100 -> Plus
3R 30967197..30967334 919..1056 99 -> Plus
3R 30967398..30967909 1057..1568 99 -> Plus
3R 30969528..30970218 1569..2259 99   Plus

AT09701.pep Sequence

Translation from 775 to 1995

> AT09701.pep
MSSSNRSTTPTGSEMDEDEMVVTESEDSNDSWTTEEFSSEFIMRYGSRHS
GGGSNGTPGNEKPFACPVPGCKKRYKNVNGIKYHSKNGHKKDGRVRKGYK
CHCGKSYKTAQGLKNHALHTHNSQPDSVLNAQLANALAIGDGASAATPVG
SSNTSSNPNPPPIIQRSNSPSQSLGSLSPSSISNMSSSASSCHGGSGSLS
NGNNGNNGSTTSNTAILTSNGNVLQQLSAGNVVTLTNLPTQQHQQQQPQP
QQQQQQQLHQNTATETSYSCSNNSNLSNPNSNHGSSDSSKPPTTLLSVNK
RSTAIASAKLPTTGNSLPMQISPNFIEHKYSALDMKEKFFLNLRAGKAVA
SSQGADRMGSPMGHQSDVGISGGSGAGGGLRAVAVGQMCALQNEHIHQNL
FKKTIN*

AT09701.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18420-PA 765 GF18420-PA 119..342 8..238 901 84 Plus
Dana\GF18420-PA 765 GF18420-PA 685..765 318..406 269 69.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11797-PA 716 GG11797-PA 118..347 8..240 913 97.4 Plus
Dere\GG11797-PA 716 GG11797-PA 593..716 283..406 501 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13980-PA 597 GH13980-PA 494..597 319..406 202 52.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PF 516 CG12054-PF 111..516 1..406 2123 100 Plus
CG12054-PE 516 CG12054-PE 111..516 1..406 2123 100 Plus
CG12054-PB 406 CG12054-PB 1..406 1..406 2123 100 Plus
CG12054-PA 628 CG12054-PA 111..413 1..308 1409 89.9 Plus
Mur89F-PC 2158 CG4090-PC 461..836 2..376 165 23.5 Plus
Mur89F-PB 2159 CG4090-PB 461..836 2..376 165 23.5 Plus
Lmx1a-PC 639 CG32105-PC 8..241 179..379 161 27.8 Plus
Lmx1a-PB 640 CG32105-PB 8..241 179..379 161 27.8 Plus
Mur89F-PC 2158 CG4090-PC 956..1208 2..299 156 24.8 Plus
Mur89F-PB 2159 CG4090-PB 956..1208 2..299 156 24.8 Plus
opa-PA 609 CG1133-PA 314..491 57..260 155 29.5 Plus
Sp1-PB 520 CG1343-PB 243..461 57..260 154 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22324-PA 711 GI22324-PA 117..338 9..237 752 72.8 Plus
Dmoj\GI22325-PA 106 GI22325-PA 11..106 318..406 199 51.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13544-PA 695 GL13544-PA 117..346 8..240 816 81.5 Plus
Dper\GL13545-PA 239 GL13545-PA 155..239 318..406 262 61.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30079-PA 696 GA30079-PA 117..345 8..240 805 82 Plus
Dpse\GA30079-PB 452 GA30079-PB 368..452 318..406 258 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12927-PA 759 GM12927-PA 118..350 8..240 992 99.6 Plus
Dsec\GM12927-PA 759 GM12927-PA 636..759 283..406 560 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21565-PA 761 GD21565-PA 118..350 8..240 990 99.6 Plus
Dsim\GD21565-PA 761 GD21565-PA 638..761 283..406 566 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10511-PA 273 GJ10511-PA 119..242 9..132 668 96 Plus
Dvir\GJ10513-PA 100 GJ10513-PA 1..100 319..406 203 51.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22618-PA 658 GK22618-PA 128..301 9..177 744 79.3 Plus
Dwil\GK22619-PA 95 GK22619-PA 1..95 319..406 230 61.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10924-PA 758 GE10924-PA 118..347 8..237 1028 99.6 Plus
Dyak\GE10924-PA 758 GE10924-PA 635..758 283..406 514 89.5 Plus

AT09701.hyp Sequence

Translation from 775 to 1995

> AT09701.hyp
MSSSNRSTTPTGSEMDEDEMVVTESEDSNDSWTTEEFSSEFIMRYGSRHS
GGGSNGTPGNEKPFACPVPGCKKRYKNVNGIKYHSKNGHKKDGRVRKGYK
CHCGKSYKTAQGLKNHALHTHNSQPDSVLNAQLANALAIGDGASAATPVG
SSNTSSNPNPPPIIQRSNSPSQSLGSLSPSSISNMSSSASSCHGGSGSLS
NGNNGNNGSTTSNTAILTSNGNVLQQLSAGNVVTLTNLPTQQHQQQQPQP
QQQQQQQLHQNTATETSYSCSNNSNLSNPNSNHGSSDSSKPPTTLLSVNK
RSTAIASAKLPTTGNSLPMQISPNFIEHKYSALDMKEKFFLNLRAGKAVA
SSQGADRMGSPMGHQSDVGISGGSGAGGGLRAVAVGQMCALQNEHIHQNL
FKKTIN*

AT09701.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12054-PB 406 CG12054-PB 1..406 1..406 2123 100 Plus
CG12054-PF 516 CG12054-PF 111..516 1..406 2123 100 Plus
CG12054-PE 516 CG12054-PE 111..516 1..406 2123 100 Plus
CG12054-PA 628 CG12054-PA 111..413 1..308 1409 89.9 Plus
Mur89F-PC 2158 CG4090-PC 461..836 2..376 165 23.5 Plus