Clone AT09729 Report

Search the DGRC for AT09729

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:97
Well:29
Vector:pOTB7
Associated Gene/TranscriptCG5062-RA
Protein status:AT09729.pep: gold
Sequenced Size:2075

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5062 2007-09-25 DGC5 pick
CG5062 2008-04-29 Release 5.5 accounting
CG5062 2008-04-29 Picked prior to 5.5
CG5062 2008-08-15 Release 5.9 accounting
CG5062 2008-12-18 5.12 accounting

Clone Sequence Records

AT09729.complete Sequence

2075 bp assembled on 2007-12-12

GenBank Submission: BT031174

> AT09729.complete
CAACAAACCGAACAAAGGAACAAACTCAATAGCTAAGCGAGAAATCTGCT
ATTGCGTTTTACCCCACACCCCTCTGGCCATTTGCAATTTCAAACGCGAT
ATACATATAGAATAGAATTCGTCAAGATGCCAATGGTGATGCCATGTCGT
TCGCGAGCTGCGATGAAACTGCACCCGGATTGCTATGATCGACTTAAGAA
GCCGATTTATCTGGAAACGCCACCATTATCGACCGTCGAAGAGGAGCCAC
TATGTGGCGTACGCCGTGATAGACCCGTAAAGCCAAAGGTTCAGAGGCGA
CCATTACCGCCCGGCACACGTCTACCGAATCCAGTAGCCGTGCCTGGACA
GAAGATCACACGTTCGGCGGTGGGTGGCGGTAAGGCGCCACCGCGAGCCC
GCAAATACGACGGTGCCAAGGCCACGTTCTTTCACATCAAGGGTCAATCA
TGGGAATCCAAGGGCTATGCGGAGCTCTCACAGTGCGAACTGGATCGCAT
GCGGGCATCGAGGCCGCGTACCACCGAGGAGCGTCGCGCGGAACAGGATC
GCCGGATGGAGGAGCAGCAATATCACACAGCCGAAGCAGAACGTATGCGT
AACTATTTCCACGACATTGATGAGCAGCGCAGGGAGAAGGAGCGCGAGGC
CCAGAAGAGGGACGATGACGAGGCCGATGAGGATGTCAACGAGGATCGGC
GTGCGGAGGCCAAACGATTGCAGGTACTACACCGCGCCTTGGATGCCAAA
TACGAGTCAGATGTGCGAGTTAAGGATGCCACGCGTGCGATATCCGAGGC
CAAATGCAGTGCCATGTGGACGGCTCAGATACAGGAAAGGAAGCTACTCA
ATCGCATTCAACTCGATCATGACGAGGAGATGGCCCGCAAGAATCGTGAC
TACAACAATGCCAAATGGGGCACGGTGGAGCAGCAAGATCAGGCCGAAGA
GGAGAGGCGCCGGCAATTTGGCAACGCAGTGCGTGAACAAATCACTGATC
GCGAAAAGTTACGTTTCCTGGCCCAGGATCGTCTGCGATTGGAGGCGCGA
GACTTGCGTGCCGCCGTCGATGAGTATAAAAAGGCTGAATTGGCAGAGGG
CGAGATGAAATCGCGCCGTAAGCTGGCCTATCGGGATGAATTGAATAAGT
ATACGAAATTGCATCGGAATTTCGTACGGATGATGTGCGAACAGGATCAA
AGAGATGAGAACAGGGCCTACGAGTATCTAAAGCTCAAGGAGCAGCAATT
GAAACAACAGCGAGCGGAACGCGAAGCCATCGCGGCGGATGAGAAACGCA
AACGGGATGTTCTCTTTGCAGTCGGCCAAAAGATTCTCGATGCTAAGGAT
AATCGCGAGGAGATGCATTTCCTGGCGGAACACGAACGCCTCGAACGAAA
GTACAGAGAAAACGAACGTAAGGCAGCCGAAAAGGAACGCAAAATGGCCG
CCGAACTCAAGCGTGCCAATATGGAGCAAATGGAGCATCTTAGCCAAATG
AAGGCCTGCTTCTATGTGCAACGTGAACGCGAACTAAAGGAGATGATCGA
GTATCGAAAGAAGCACGAGGAGCAAATGAAGCGCGAGGCCGAGGAGCAGG
CCATCAAAAAGGCCTGTCTGCGCTCCAGTGTCTCGTGCCAAATCGAAGAA
CGGGAGAAGGCTCGTCGCCGCGAACTGGAGGAGGAACACTTGGCCTTCGA
AAGGGAGCGGGCAGCTGAGGCGCAGCGGCAAAAGGAAATCGATACGGTGA
TCACAGTCAAACTGGATGATCTACAAAAGCGCGGATGTCTGCCCAATTTG
GCGGTGCAATCGCTAAAGGGTCGTGTCGCCAATGCTGGCAACAAAAAGAA
GCTGGGCGCTGAATTCACTTAGATAGTTATATTTTCTAAAAATCCATCCA
TAGACAGACAGCATCAAACACGCGCACACACTCACTCCCACACACACACA
CACACACACAGACACACACATGAACTCAAGTTGACAATGGCATAGATGAT
GACTTTTCGAGCTTGGCGGAATTAAAACTTGCAGCACATATAAAATGTAC
ATAATGTAAAAAAAAAAAAAAAAAA

AT09729.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5062-RA 2627 CG5062-RA 336..2397 1..2058 10135 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5072827..5074167 2057..717 6540 99.2 Minus
chrX 22417052 chrX 5074222..5074947 726..1 3555 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:44:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5180181..5181526 2058..717 6575 99.4 Minus
X 23542271 X 5181581..5182306 726..1 3585 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5188279..5189624 2058..717 6585 99.4 Minus
X 23527363 X 5189679..5190404 726..1 3585 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 15:31:23 has no hits.

AT09729.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:32:21 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5072827..5072913 1971..2057 98 == Minus
chrX 5072967..5074160 724..1917 99 <- Minus
chrX 5074225..5074915 33..723 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:58:01 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 1..1746 127..1872 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:00:59 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 1..1746 127..1872 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:47:18 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 1..1746 127..1872 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:25 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 1..1746 127..1872 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:48:00 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 1..1746 127..1872 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:43:27 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 64..2124 1..2057 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:00:59 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 64..2124 1..2057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:18 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 64..2124 1..2057 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:25 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 64..2124 1..2057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:48:00 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
CG5062-RA 64..2124 1..2057 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:21 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
X 5180182..5181519 724..2057 99 <- Minus
X 5181584..5182306 1..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:21 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
X 5180182..5181519 724..2057 99 <- Minus
X 5181584..5182306 1..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:32:21 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
X 5180182..5181519 724..2057 99 <- Minus
X 5181584..5182306 1..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:18 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5074215..5075552 724..2057 99 <- Minus
arm_X 5075617..5076339 1..723 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:52:53 Download gff for AT09729.complete
Subject Subject Range Query Range Percent Splice Strand
X 5188280..5189617 724..2057 99 <- Minus
X 5189682..5190404 1..723 99   Minus

AT09729.pep Sequence

Translation from 126 to 1871

> AT09729.pep
MPMVMPCRSRAAMKLHPDCYDRLKKPIYLETPPLSTVEEEPLCGVRRDRP
VKPKVQRRPLPPGTRLPNPVAVPGQKITRSAVGGGKAPPRARKYDGAKAT
FFHIKGQSWESKGYAELSQCELDRMRASRPRTTEERRAEQDRRMEEQQYH
TAEAERMRNYFHDIDEQRREKEREAQKRDDDEADEDVNEDRRAEAKRLQV
LHRALDAKYESDVRVKDATRAISEAKCSAMWTAQIQERKLLNRIQLDHDE
EMARKNRDYNNAKWGTVEQQDQAEEERRRQFGNAVREQITDREKLRFLAQ
DRLRLEARDLRAAVDEYKKAELAEGEMKSRRKLAYRDELNKYTKLHRNFV
RMMCEQDQRDENRAYEYLKLKEQQLKQQRAEREAIAADEKRKRDVLFAVG
QKILDAKDNREEMHFLAEHERLERKYRENERKAAEKERKMAAELKRANME
QMEHLSQMKACFYVQRERELKEMIEYRKKHEEQMKREAEEQAIKKACLRS
SVSCQIEEREKARRRELEEEHLAFERERAAEAQRQKEIDTVITVKLDDLQ
KRGCLPNLAVQSLKGRVANAGNKKKLGAEFT*

AT09729.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20956-PA 576 GF20956-PA 1..576 1..581 2442 83 Plus
Dana\GF10977-PA 543 GF10977-PA 166..521 200..556 218 26.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18507-PA 580 GG18507-PA 1..580 1..581 2734 93.1 Plus
Dere\GG16255-PA 533 GG16255-PA 156..524 200..569 241 25.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23457-PA 199 GH23457-PA 11..193 392..574 388 48.6 Plus
Dgri\GH16691-PA 541 GH16691-PA 127..532 154..569 308 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5062-PA 581 CG5062-PA 1..581 1..581 2990 100 Plus
CG11449-PA 538 CG11449-PA 68..529 116..569 434 24.2 Plus
CG2839-PA 826 CG2839-PA 310..772 110..575 310 25 Plus
CG2839-PA 826 CG2839-PA 304..722 110..537 309 24.8 Plus
CG2839-PA 826 CG2839-PA 285..697 121..537 302 24.2 Plus
CG2839-PA 826 CG2839-PA 280..660 129..537 262 24 Plus
CG2839-PA 826 CG2839-PA 263..631 137..537 228 23.9 Plus
CG2839-PA 826 CG2839-PA 256..595 202..537 219 24.8 Plus
rgn-PD 800 CG6014-PD 341..747 126..551 212 22.8 Plus
rgn-PA 800 CG6014-PA 341..747 126..551 212 22.8 Plus
rgn-PC 808 CG6014-PC 349..755 126..551 212 22.8 Plus
rgn-PB 808 CG6014-PB 349..755 126..551 212 22.8 Plus
rgn-PD 800 CG6014-PD 428..789 123..495 203 23.2 Plus
rgn-PA 800 CG6014-PA 428..789 123..495 203 23.2 Plus
rgn-PC 808 CG6014-PC 436..797 123..495 203 23.2 Plus
rgn-PB 808 CG6014-PB 436..797 123..495 203 23.2 Plus
rgn-PD 800 CG6014-PD 391..798 129..548 202 22.9 Plus
rgn-PA 800 CG6014-PA 391..798 129..548 202 22.9 Plus
rgn-PC 808 CG6014-PC 399..806 129..548 202 22.9 Plus
rgn-PB 808 CG6014-PB 399..806 129..548 202 22.9 Plus
rgn-PD 800 CG6014-PD 330..711 135..539 196 24.8 Plus
rgn-PA 800 CG6014-PA 330..711 135..539 196 24.8 Plus
rgn-PC 808 CG6014-PC 338..719 135..539 196 24.8 Plus
rgn-PB 808 CG6014-PB 338..719 135..539 196 24.8 Plus
CG31551-PA 1393 CG31551-PA 255..679 119..551 193 21.9 Plus
rudhira-PE 2075 CG43154-PE 1183..1655 110..579 192 20.4 Plus
rudhira-PC 2075 CG43154-PC 1183..1655 110..579 192 20.4 Plus
CG31551-PA 1393 CG31551-PA 299..772 46..545 174 21.8 Plus
Strn-Mlck-PT 7905 CG44162-PT 3610..4064 135..540 163 20.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 3649..4103 135..540 163 20.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 3610..4064 135..540 163 20.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 3649..4103 135..540 163 20.6 Plus
rudhira-PE 2075 CG43154-PE 1325..1664 166..503 162 19.9 Plus
rudhira-PC 2075 CG43154-PC 1325..1664 166..503 162 19.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 3440..3855 134..548 161 17.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 3479..3894 134..548 161 17.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 3440..3855 134..548 161 17.9 Plus
Strn-Mlck-PU 8255 CG44162-PU 3479..3894 134..548 161 17.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15308-PA 601 GI15308-PA 1..599 1..580 1067 45.3 Plus
Dmoj\GI11378-PA 541 GI11378-PA 132..526 161..563 282 27.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14344-PA 569 GL14344-PA 1..569 1..581 1607 58.9 Plus
Dper\GL23132-PA 395 GL23132-PA 163..387 200..424 230 29.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18630-PA 582 GA18630-PA 1..582 1..581 1696 60.8 Plus
Dpse\GA11010-PA 540 GA11010-PA 163..539 200..576 277 26.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12655-PA 578 GM12655-PA 1..578 1..581 2954 97.2 Plus
Dsec\GM22444-PA 538 GM22444-PA 161..529 200..569 254 25.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24597-PA 578 GD24597-PA 1..578 1..581 2961 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16580-PA 595 GJ16580-PA 1..588 1..574 1170 48.2 Plus
Dvir\GJ11634-PA 542 GJ11634-PA 165..533 200..569 289 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10338-PA 605 GK10338-PA 1..605 1..581 1547 57.3 Plus
Dwil\GK16758-PA 538 GK16758-PA 92..529 142..569 279 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16824-PA 580 GE16824-PA 1..580 1..581 2856 95.5 Plus
Dyak\GE22616-PA 535 GE22616-PA 158..526 200..569 265 27.5 Plus

AT09729.hyp Sequence

Translation from 126 to 1871

> AT09729.hyp
MPMVMPCRSRAAMKLHPDCYDRLKKPIYLETPPLSTVEEEPLCGVRRDRP
VKPKVQRRPLPPGTRLPNPVAVPGQKITRSAVGGGKAPPRARKYDGAKAT
FFHIKGQSWESKGYAELSQCELDRMRASRPRTTEERRAEQDRRMEEQQYH
TAEAERMRNYFHDIDEQRREKEREAQKRDDDEADEDVNEDRRAEAKRLQV
LHRALDAKYESDVRVKDATRAISEAKCSAMWTAQIQERKLLNRIQLDHDE
EMARKNRDYNNAKWGTVEQQDQAEEERRRQFGNAVREQITDREKLRFLAQ
DRLRLEARDLRAAVDEYKKAELAEGEMKSRRKLAYRDELNKYTKLHRNFV
RMMCEQDQRDENRAYEYLKLKEQQLKQQRAEREAIAADEKRKRDVLFAVG
QKILDAKDNREEMHFLAEHERLERKYRENERKAAEKERKMAAELKRANME
QMEHLSQMKACFYVQRERELKEMIEYRKKHEEQMKREAEEQAIKKACLRS
SVSCQIEEREKARRRELEEEHLAFERERAAEAQRQKEIDTVITVKLDDLQ
KRGCLPNLAVQSLKGRVANAGNKKKLGAEFT*

AT09729.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5062-PA 581 CG5062-PA 1..581 1..581 2990 100 Plus
CG11449-PA 538 CG11449-PA 68..529 116..569 434 24.2 Plus
CG2839-PA 826 CG2839-PA 310..772 110..575 310 25 Plus
CG2839-PA 826 CG2839-PA 304..722 110..537 309 24.8 Plus
CG2839-PA 826 CG2839-PA 285..697 121..537 302 24.2 Plus
CG2839-PA 826 CG2839-PA 280..660 129..537 262 24 Plus
CG2839-PA 826 CG2839-PA 263..631 137..537 228 23.9 Plus
CG2839-PA 826 CG2839-PA 256..595 202..537 219 24.8 Plus
rgn-PD 800 CG6014-PD 341..747 126..551 212 22.8 Plus
rgn-PA 800 CG6014-PA 341..747 126..551 212 22.8 Plus
rgn-PD 800 CG6014-PD 428..789 123..495 203 23.2 Plus
rgn-PD 800 CG6014-PD 391..798 129..548 202 22.9 Plus
rgn-PD 800 CG6014-PD 330..711 135..539 196 24.8 Plus