Clone AT09807 Report

Search the DGRC for AT09807

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:98
Well:7
Vector:pOTB7
Associated Gene/TranscriptCG17110-RA
Protein status:AT09807.pep: gold
Preliminary Size:1224
Sequenced Size:1553

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17110 2002-01-01 Sim4 clustering to Release 2
CG17110 2002-02-22 Blastp of sequenced clone
CG17110 2003-01-01 Sim4 clustering to Release 3
CG17110 2008-04-29 Release 5.5 accounting
CG17110 2008-08-15 Release 5.9 accounting
CG17110 2008-12-18 5.12 accounting

Clone Sequence Records

AT09807.complete Sequence

1553 bp (1553 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089299

> AT09807.complete
TAATGATAACATTAAGCTCTTAGCGCAAAGATGAAAATCCGCAAATTGTG
GGCTCTTCTAATCAAGTAGCTTAAAGTCAACAACTGATAATGCCATTAAG
TCAATCCACACTCAGACTTCAAACCAAACAGCACGGTGGATTACAAGTCA
GTTCCTTTAGAACCACGGGGCATTCAACTCAAAATGTGCACTTGCACGGA
ACAATGGAAGAACGACGAGGAAATAATCATTTTCCAGGAGTATTTGCGCA
TTCCCTCGGTGCATCCAGACGTGGACTACACTGCATGCGTGGAGTTCCTA
AAACGCCAGGCTAACAAACTTAATCTCCGCGTGGACGTGGTGTATCCTGT
TGTGCCTTCGAAACCGGTGGTGATTATGAAGTGGCTGGGCAAGCATCCCG
AGCTGAAATCCATTATATTGAACTCACACATGGACGTGGTGCCCGTGTTT
CCCGAAAAGTGGACCCATGAGCCGTTTGGTGCCCACATAGACGCCCAAGG
CCGGATTTATGCACGCGGTGCCCAGGACATGAAGTCCGTGGGATGTCAGT
ACATGGCTGCGGTCCGTGCACTCAAAGCCAGTGGCTATCAGCCAAAAAGG
ACCGTATATTTGACTTTTGTGCCCGACGAGGAAACTGGCGGACACATGGG
CATGGCTGAATTCGTCAAGGGTGATTACTTCAAAGCCATGAATGTGGGCT
TTAGCCTGGACGAGGGCATCGCCAGTGAAGATGACACTTATCCTGTATTT
TACGCCGAGCGTACATTGTGGCAACTTCGATTTAAATTCAGTGGCACTTC
AGGTCATGGATCGCTGCTGCACAAAAGCACGGCTGGCGAAAAGTTTCACT
TTGTGATGGATAAGCTGATGAAGTTCCGAGAAACCCAGGTCAAGCTACTG
GCCGAGGACTCCTCCTTGCAGTCCGGTGATGTGACCACTTTGAACCTGAC
CCAACTCAACGGTGGCGTCCAAAGCAATGTGGTTCCCCCCGTACTAGAAG
CCACTTTTGATATTCGCATAGCCATCAACCAGAATGCCGATGCAATGGAG
AATCAGATTCGCGAGTGGTGCAACGAAGTCGGTGGTGGAGTGGAACTGGA
TTTCACGCTGAAGTGCCCCTCGGTGGTGACCAAGATAGACGACTCCAATC
CCTACTGGCTGGGCTTCAAAAAGGGACTAGATGAACTAGGTTTGATCACC
CATACACGAGTTTTCCCCGGCGCCACCGATAGCTTCTACGTCCGGCAAGT
GGGAATTCCCGCTCTGGGATTTTCACCCATCAACAACACCCCGGTGCTGC
TGCACAATCATGATGAATATTTGCGGGCCGACACATATCTGCACGGAATT
CAGGTGTACAGGAAGCTCATCCCCTCTATTGCTGATTCATAAAATGTTCA
AGCGAAGTTCCACTCATAAATGGAAATCAATATGCTACAATTGGTCTTAT
CGCTTATGAGTAATGTTTTTGGCTCGATGAGTGTAGGACCAAAATTAAAT
GTTTAAATGGTGTGACTACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

AT09807.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RA 1777 CG17110-RA 3..1523 5..1525 7605 100 Plus
CG6726-RB 1456 CG6726-RB 1146..1261 1255..1370 220 79.3 Plus
CG6726-RA 1473 CG6726-RA 1163..1278 1255..1370 220 79.3 Plus
CG6726-RB 1456 CG6726-RB 813..915 925..1027 200 79.6 Plus
CG6726-RA 1473 CG6726-RA 830..932 925..1027 200 79.6 Plus
CG6726-RB 1456 CG6726-RB 453..542 565..654 180 80 Plus
CG6726-RA 1473 CG6726-RA 470..559 565..654 180 80 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18917257..18917748 281..772 2460 100 Plus
chr3R 27901430 chr3R 18917807..18918221 773..1187 2075 100 Plus
chr3R 27901430 chr3R 18918277..18918611 1188..1522 1675 100 Plus
chr3R 27901430 chr3R 18916927..18917202 5..280 1380 100 Plus
chr3R 27901430 chr3R 18921334..18921815 281..762 385 72 Plus
chr3R 27901430 chr3R 18919386..18919568 360..542 240 75.4 Plus
chr3R 27901430 chr3R 18915629..18915936 427..734 235 71.8 Plus
chr3R 27901430 chr3R 18916180..18916326 925..1071 225 76.9 Plus
chr3R 27901430 chr3R 18916576..18916691 1255..1370 220 79.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:44:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23093830..23094321 281..772 2460 100 Plus
3R 32079331 3R 23094380..23094794 773..1187 2075 100 Plus
3R 32079331 3R 23094850..23095187 1188..1525 1690 100 Plus
3R 32079331 3R 23093500..23093775 5..280 1380 100 Plus
3R 32079331 3R 23097907..23098388 281..762 370 71.8 Plus
3R 32079331 3R 23095959..23096141 360..542 240 75.4 Plus
3R 32079331 3R 23092753..23092899 925..1071 225 76.9 Plus
3R 32079331 3R 23092285..23092509 510..734 225 73.3 Plus
3R 32079331 3R 23093149..23093264 1255..1370 220 79.3 Plus
3R 32079331 3R 23099861..23099980 423..542 195 77.5 Plus
3R 32079331 3R 10676732..10676856 543..419 190 76.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22834661..22835152 281..772 2460 100 Plus
3R 31820162 3R 22835211..22835625 773..1187 2075 100 Plus
3R 31820162 3R 22835681..22836018 1188..1525 1690 100 Plus
3R 31820162 3R 22834331..22834606 5..280 1380 100 Plus
3R 31820162 3R 22836790..22836972 360..542 240 75.4 Plus
3R 31820162 3R 22833980..22834095 1255..1370 220 79.3 Plus
3R 31820162 3R 22839031..22839219 574..762 210 74 Plus
3R 31820162 3R 22833584..22833686 925..1027 200 79.6 Plus
3R 31820162 3R 22840692..22840811 423..542 195 77.5 Plus
3R 31820162 3R 22833171..22833260 565..654 180 80 Plus
3R 31820162 3R 22837414..22837473 924..983 150 83.3 Plus
3R 31820162 3R 22838738..22838841 281..384 145 75.9 Plus
3R 31820162 3R 22838597..22838678 197..278 140 78 Plus
Blast to na_te.dros performed on 2019-03-15 17:50:04 has no hits.

AT09807.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:15 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18916925..18917202 1..280 99 -> Plus
chr3R 18917257..18917748 281..772 100 -> Plus
chr3R 18917807..18918221 773..1187 100 -> Plus
chr3R 18918277..18918611 1188..1522 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:58:07 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1209 184..1392 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:42:19 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1209 184..1392 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:47:50 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1209 184..1392 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:11:10 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1209 184..1392 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:09 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1209 184..1392 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:07:02 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1390 4..1392 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:42:19 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1520 4..1522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:47:50 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1520 4..1522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:11:10 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 1..1390 4..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:09 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RC 1390..2911 1..1522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:15 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23093498..23093775 1..280 99 -> Plus
3R 23093830..23094321 281..772 100 -> Plus
3R 23094380..23094794 773..1187 100 -> Plus
3R 23094850..23095184 1188..1522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:15 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23093498..23093775 1..280 99 -> Plus
3R 23093830..23094321 281..772 100 -> Plus
3R 23094380..23094794 773..1187 100 -> Plus
3R 23094850..23095184 1188..1522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:15 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23093498..23093775 1..280 99 -> Plus
3R 23093830..23094321 281..772 100 -> Plus
3R 23094380..23094794 773..1187 100 -> Plus
3R 23094850..23095184 1188..1522 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:47:50 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18919220..18919497 1..280 99 -> Plus
arm_3R 18919552..18920043 281..772 100 -> Plus
arm_3R 18920102..18920516 773..1187 100 -> Plus
arm_3R 18920572..18920906 1188..1522 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:45:36 Download gff for AT09807.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22834329..22834606 1..280 99 -> Plus
3R 22834661..22835152 281..772 100 -> Plus
3R 22835211..22835625 773..1187 100 -> Plus
3R 22835681..22836015 1188..1522 100   Plus

AT09807.pep Sequence

Translation from 183 to 1391

> AT09807.pep
MCTCTEQWKNDEEIIIFQEYLRIPSVHPDVDYTACVEFLKRQANKLNLRV
DVVYPVVPSKPVVIMKWLGKHPELKSIILNSHMDVVPVFPEKWTHEPFGA
HIDAQGRIYARGAQDMKSVGCQYMAAVRALKASGYQPKRTVYLTFVPDEE
TGGHMGMAEFVKGDYFKAMNVGFSLDEGIASEDDTYPVFYAERTLWQLRF
KFSGTSGHGSLLHKSTAGEKFHFVMDKLMKFRETQVKLLAEDSSLQSGDV
TTLNLTQLNGGVQSNVVPPVLEATFDIRIAINQNADAMENQIREWCNEVG
GGVELDFTLKCPSVVTKIDDSNPYWLGFKKGLDELGLITHTRVFPGATDS
FYVRQVGIPALGFSPINNTPVLLHNHDEYLRADTYLHGIQVYRKLIPSIA
DS*

AT09807.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16976-PA 401 GF16976-PA 3..401 5..402 1655 74.4 Plus
Dana\GF16975-PA 401 GF16975-PA 2..401 4..402 1576 71.8 Plus
Dana\GF16978-PA 397 GF16978-PA 3..395 8..400 1397 65 Plus
Dana\GF16977-PA 400 GF16977-PA 2..398 4..400 1356 62.8 Plus
Dana\GF16979-PA 398 GF16979-PA 2..397 6..401 1332 62.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11185-PA 402 GG11185-PA 1..402 1..402 2039 93.3 Plus
Dere\GG11184-PA 401 GG11184-PA 2..401 4..402 1565 70.5 Plus
Dere\GG11187-PA 398 GG11187-PA 2..397 4..401 1403 64.9 Plus
Dere\GG11186-PA 400 GG11186-PA 2..399 4..401 1345 62.7 Plus
Dere\GG17281-PA 401 GG17281-PA 2..401 4..402 1272 56.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23739-PA 401 GH23739-PA 5..400 7..401 1541 69.9 Plus
Dgri\GH23814-PA 400 GH23814-PA 2..399 4..401 1490 68.2 Plus
Dgri\GH23872-PA 401 GH23872-PA 5..400 7..401 1454 66.7 Plus
Dgri\GH11748-PA 402 GH11748-PA 3..400 5..401 1268 57.3 Plus
Dgri\GH11206-PA 402 GH11206-PA 3..400 5..401 1266 57 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-PB 402 CG17110-PB 1..402 1..402 2134 100 Plus
CG17110-PC 402 CG17110-PC 1..402 1..402 2134 100 Plus
CG17110-PA 402 CG17110-PA 1..402 1..402 2134 100 Plus
CG6726-PC 401 CG6726-PC 3..401 5..402 1526 70.2 Plus
CG6726-PA 401 CG6726-PA 3..401 5..402 1526 70.2 Plus
CG6726-PB 401 CG6726-PB 3..401 5..402 1526 70.2 Plus
CG6733-PA 401 CG6733-PA 3..400 5..401 1419 66.3 Plus
CG6738-PA 401 CG6738-PA 4..400 6..401 1338 63.2 Plus
CG17109-PB 400 CG17109-PB 3..399 5..401 1318 63.1 Plus
CG17109-PA 400 CG17109-PA 3..399 5..401 1318 63.1 Plus
CG6465-PA 401 CG6465-PA 3..400 5..401 1261 57.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23017-PA 401 GI23017-PA 5..400 7..401 1549 70.7 Plus
Dmoj\GI23018-PA 399 GI23018-PA 5..399 7..402 1488 69 Plus
Dmoj\GI23020-PA 401 GI23020-PA 5..400 7..401 1374 63.1 Plus
Dmoj\GI23019-PA 401 GI23019-PA 5..399 7..400 1337 61.5 Plus
Dmoj\GI18128-PA 402 GI18128-PA 2..400 4..401 1260 56.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13663-PA 401 GL13663-PA 2..400 4..401 1638 73.7 Plus
Dper\GL13662-PA 401 GL13662-PA 5..401 7..402 1604 72.8 Plus
Dper\GL13664-PA 401 GL13664-PA 4..401 6..402 1442 65.1 Plus
Dper\GL23825-PA 406 GL23825-PA 5..400 7..401 1270 57.8 Plus
Dper\GL23826-PA 401 GL23826-PA 6..399 8..400 1189 54.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26984-PA 401 GA26984-PA 2..400 4..401 1639 73.2 Plus
Dpse\GA19815-PA 401 GA19815-PA 5..401 7..402 1605 73 Plus
Dpse\GA19818-PA 401 GA19818-PA 4..401 6..402 1446 65.3 Plus
Dpse\GA27068-PA 406 GA27068-PA 5..400 7..401 1272 58.1 Plus
Dpse\GA29129-PA 406 GA29129-PA 3..400 5..401 1259 57.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26485-PA 402 GM26485-PA 1..402 1..402 2109 97 Plus
Dsec\GM26483-PA 401 GM26483-PA 2..401 4..402 1555 69.8 Plus
Dsec\GM26487-PA 401 GM26487-PA 2..399 4..400 1443 66.1 Plus
Dsec\GM26486-PA 400 GM26486-PA 2..399 4..401 1346 62.7 Plus
Dsec\GM26165-PA 401 GM26165-PA 2..400 4..401 1294 58.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20998-PA 402 GD20998-PA 1..402 1..402 2092 96.3 Plus
Dsim\GD20996-PA 401 GD20996-PA 2..401 4..402 1574 70.8 Plus
Dsim\GD21000-PA 401 GD21000-PA 2..399 4..400 1450 66.6 Plus
Dsim\GD21001-PA 401 GD21001-PA 3..400 5..401 1358 62.6 Plus
Dsim\GD20999-PA 400 GD20999-PA 2..399 4..401 1350 62.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24611-PA 401 GJ24611-PA 5..400 7..401 1565 71.5 Plus
Dvir\GJ24612-PA 399 GJ24612-PA 5..398 7..401 1499 68.4 Plus
Dvir\GJ24614-PA 401 GJ24614-PA 5..400 7..401 1448 66.7 Plus
Dvir\GJ17753-PA 402 GJ17753-PA 2..400 4..401 1215 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14410-PA 401 GK14410-PA 5..401 7..402 1563 71 Plus
Dwil\GK14412-PA 400 GK14412-PA 5..400 7..402 1465 66.8 Plus
Dwil\GK14413-PA 401 GK14413-PA 2..400 4..401 1360 62.4 Plus
Dwil\GK22579-PA 401 GK22579-PA 5..400 7..401 1261 57.1 Plus
Dwil\GK22580-PA 403 GK22580-PA 2..402 4..401 1193 53.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10352-PA 402 GE10352-PA 1..402 1..402 1971 92.8 Plus
Dyak\GE10351-PA 401 GE10351-PA 2..401 4..402 1573 71 Plus
Dyak\GE10354-PA 401 GE10354-PA 2..400 4..401 1436 65.4 Plus
Dyak\GE10355-PA 401 GE10355-PA 3..400 5..401 1417 65.3 Plus
Dyak\GE10353-PA 400 GE10353-PA 2..399 4..401 1344 62.7 Plus

AT09807.hyp Sequence

Translation from 183 to 1391

> AT09807.hyp
MCTCTEQWKNDEEIIIFQEYLRIPSVHPDVDYTACVEFLKRQANKLNLRV
DVVYPVVPSKPVVIMKWLGKHPELKSIILNSHMDVVPVFPEKWTHEPFGA
HIDAQGRIYARGAQDMKSVGCQYMAAVRALKASGYQPKRTVYLTFVPDEE
TGGHMGMAEFVKGDYFKAMNVGFSLDEGIASEDDTYPVFYAERTLWQLRF
KFSGTSGHGSLLHKSTAGEKFHFVMDKLMKFRETQVKLLAEDSSLQSGDV
TTLNLTQLNGGVQSNVVPPVLEATFDIRIAINQNADAMENQIREWCNEVG
GGVELDFTLKCPSVVTKIDDSNPYWLGFKKGLDELGLITHTRVFPGATDS
FYVRQVGIPALGFSPINNTPVLLHNHDEYLRADTYLHGIQVYRKLIPSIA
DS*

AT09807.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-PB 402 CG17110-PB 1..402 1..402 2134 100 Plus
CG17110-PC 402 CG17110-PC 1..402 1..402 2134 100 Plus
CG17110-PA 402 CG17110-PA 1..402 1..402 2134 100 Plus
CG6726-PC 401 CG6726-PC 3..401 5..402 1526 70.2 Plus
CG6726-PA 401 CG6726-PA 3..401 5..402 1526 70.2 Plus