Clone AT09889 Report

Search the DGRC for AT09889

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:98
Well:89
Vector:pOTB7
Associated Gene/TranscriptCG13243-RA
Protein status:AT09889.pep: gold
Preliminary Size:1194
Sequenced Size:1359

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13243 2002-01-01 Sim4 clustering to Release 2
CG13243 2002-06-01 Blastp of sequenced clone
CG13243 2003-01-01 Sim4 clustering to Release 3
CG13243 2008-04-29 Release 5.5 accounting
CG13243 2008-08-15 Release 5.9 accounting
CG13243 2008-12-18 5.12 accounting

Clone Sequence Records

AT09889.complete Sequence

1359 bp (1359 high quality bases) assembled on 2002-06-01

GenBank Submission: AY118276

> AT09889.complete
AAATTAGACTGTAAAATCAAAAGAATGGATGCTCAAGGAGACCAGGATAT
GCGGCTGGATCCGCCGCTCTTTGTGACCTGTGACATGGAGCAGTTTCGCG
ATCCAAACAAGAAGCGTGCCGCCAACGATGCCTGCGAGGAGCTGGACAAG
CTGGATGCCCAGGACGAGATCAGTGTGTCGAGTATCATTTCGGCGCTATT
GAGACCGATTGAGCCCTCGGACGATCAGTACAAGGTGTGCGACTGGGGCA
TCAATCCCAAGCAGTTTATGCCCACCAAACAGGCGATCATTTTCAAGGAA
CAGTTGTTCATATCGAAGTTGCGGAATACAAATTGCAAGCTAAATGAAAA
TCTAAAAATCTTCTTTGAGCGGGAACTTGAGCAGATTGGACGCTTCTGTT
TGAATGTGGAGGAATCCTTTGATGGCTATGTGATCTTCAGCAGCAGCAAA
ATGAAGAAGGGCAAGGGTATGACGGAATGTGGTCACCAGTTAAAGGGGAA
GTACGATGACAAGTTCCTTCTCATCTGCGAGAAGAGATCGGAGTTCGACC
GAATCGACAATACTCGGGTAGAGAAGACGCTGGAGTTGCGAAACCATGCC
GATTTGATGCTAACCGCCATTCGCGAAACCAAAATCAATGAGGAAGTGCA
GCGCTTCAAGGCTCGCATCGATATCAAGGATCGCGATCATGTGTTCGTCC
TGGATGGCGGGATTATGCTGCTGATGCGACACCTAGTGTGCAACAATTTT
GTGGGCAACTTCGAGTACTACACAATGAATTTGTATGGCCGGGTCCTTCG
CTGCAATCTGGTTGTTTCCAAGGAGCGCAAGGAGGTGCGAATTTTCTATC
GCACATACAAGAATGTCGTGCACATCTTCACCCAGCAATGTTTCAACGAT
GAGCTCCAGGATGTGGCCGAGACCTTCATGACTCCTGAGGGCCGGATTGT
TCTGCATTATTGGCGTGGCTATAACTACCTTTTGCATGCCGCCTGCATGC
CACCGAAGAGAAAGGAACCTATCCTACCCAAATTGGAACTAATGTGGCGC
CAAAACGAACAGCTTTCTCGCAAGTTCCGGGAGCTCAAAGCCCTCAATTA
CGAGAACGCCACCAGCTATCTGAGCAGCAATTCACAGCTGGCCGATTTTA
TGCAGGATTATGTGCTCAATCTGTTGCGGTACAAGCCCAGCAATGTCCTA
GAGTTCTCCATTATGTTTTTCCAGAATATGTCAAAGGGATAGCTTAATTC
TTAATTAGGTAATGAGTGTTTTCAAAATTTCAAGTGATCTTTGGCCAGAT
AATCCTATAAATACATTCGGGATGGGCCTATTTAGTATATAAAAAAAAAA
AAAAAAAAA

AT09889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-RA 1467 CG13243-RA 82..1422 1..1341 6705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15851527..15852839 28..1340 6565 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:44:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15852752..15854065 28..1341 6570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15852752..15854065 28..1341 6570 100 Plus
2L 23513712 2L 15852673..15852700 1..28 140 100 Plus
Blast to na_te.dros performed 2019-03-15 17:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 1579..1617 530..568 114 76.9 Plus

AT09889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:26 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15851448..15851475 1..28 100 -> Plus
chr2L 15851528..15852839 29..1340 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:58:20 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1218 25..1242 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:35 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1218 25..1242 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:18 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1218 25..1242 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:07 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1218 25..1242 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:27 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1218 25..1242 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:26 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1340 1..1340 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:35 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1340 1..1340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:18 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 82..1421 1..1340 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:08 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 1..1340 1..1340 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:27 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
CG13243-RA 82..1421 1..1340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:26 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15852673..15852700 1..28 100 -> Plus
2L 15852753..15854064 29..1340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:26 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15852673..15852700 1..28 100 -> Plus
2L 15852753..15854064 29..1340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:26 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15852673..15852700 1..28 100 -> Plus
2L 15852753..15854064 29..1340 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:18 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15852673..15852700 1..28 100 -> Plus
arm_2L 15852753..15854064 29..1340 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:34 Download gff for AT09889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15852753..15854064 29..1340 100   Plus
2L 15852673..15852700 1..28 100 -> Plus

AT09889.hyp Sequence

Translation from 1 to 1241

> AT09889.hyp
KLDCKIKRMDAQGDQDMRLDPPLFVTCDMEQFRDPNKKRAANDACEELDK
LDAQDEISVSSIISALLRPIEPSDDQYKVCDWGINPKQFMPTKQAIIFKE
QLFISKLRNTNCKLNENLKIFFERELEQIGRFCLNVEESFDGYVIFSSSK
MKKGKGMTECGHQLKGKYDDKFLLICEKRSEFDRIDNTRVEKTLELRNHA
DLMLTAIRETKINEEVQRFKARIDIKDRDHVFVLDGGIMLLMRHLVCNNF
VGNFEYYTMNLYGRVLRCNLVVSKERKEVRIFYRTYKNVVHIFTQQCFND
ELQDVAETFMTPEGRIVLHYWRGYNYLLHAACMPPKRKEPILPKLELMWR
QNEQLSRKFRELKALNYENATSYLSSNSQLADFMQDYVLNLLRYKPSNVL
EFSIMFFQNMSKG*

AT09889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-PB 405 CG13243-PB 1..405 9..413 2135 100 Plus
CG13243-PA 405 CG13243-PA 1..405 9..413 2135 100 Plus

AT09889.pep Sequence

Translation from 24 to 1241

> AT09889.pep
MDAQGDQDMRLDPPLFVTCDMEQFRDPNKKRAANDACEELDKLDAQDEIS
VSSIISALLRPIEPSDDQYKVCDWGINPKQFMPTKQAIIFKEQLFISKLR
NTNCKLNENLKIFFERELEQIGRFCLNVEESFDGYVIFSSSKMKKGKGMT
ECGHQLKGKYDDKFLLICEKRSEFDRIDNTRVEKTLELRNHADLMLTAIR
ETKINEEVQRFKARIDIKDRDHVFVLDGGIMLLMRHLVCNNFVGNFEYYT
MNLYGRVLRCNLVVSKERKEVRIFYRTYKNVVHIFTQQCFNDELQDVAET
FMTPEGRIVLHYWRGYNYLLHAACMPPKRKEPILPKLELMWRQNEQLSRK
FRELKALNYENATSYLSSNSQLADFMQDYVLNLLRYKPSNVLEFSIMFFQ
NMSKG*

AT09889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14923-PA 422 GF14923-PA 27..421 11..405 1967 90.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25175-PA 405 GG25175-PA 1..405 1..405 2150 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11352-PA 408 GH11352-PA 6..406 5..403 1795 80.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13243-PB 405 CG13243-PB 1..405 1..405 2135 100 Plus
CG13243-PA 405 CG13243-PA 1..405 1..405 2135 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17363-PA 402 GI17363-PA 6..400 9..403 1824 83.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15296-PA 397 GL15296-PA 2..394 11..403 1898 87.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12147-PA 397 GA12147-PA 2..394 11..403 1903 87.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18637-PA 405 GM18637-PA 1..405 1..405 2153 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24021-PA 405 GD24021-PA 1..405 1..405 2164 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18036-PA 395 GJ18036-PA 1..393 11..403 1825 83.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24764-PA 413 GK24764-PA 9..407 5..403 1848 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21155-PA 405 GE21155-PA 1..405 1..405 2131 96.8 Plus