Clone AT10054 Report

Search the DGRC for AT10054

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:100
Well:54
Vector:pOTB7
Associated Gene/TranscriptCG7202-RA
Protein status:AT10054.pep: gold
Sequenced Size:954

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7202-RA 2009-03-03 EST screening

Clone Sequence Records

AT10054.complete Sequence

954 bp assembled on 2009-04-13

GenBank Submission: BT082016.1

> AT10054.complete
AAAATTTCGGGAATCATGTTCGAATGCATAAGTTTCTTGTTCCTGGCTGC
CTTGGCCTTCGTGGCCTGGGCCGTTCTCTGCTTCCAGCACTTCGTCCAGG
TCCAGACGCGGCTCTCCTCTGATTTCCGAGTCGAATTATACACAGAGCGT
CCTGGGATTACGTTTGAGCCGCAGCTGTGCCACAGTCCCTCAGAGCAGAG
TAGCTCCGACAGCTCCGACAGCACCTACCAGTTTGCGACGAGCTTCGGCG
TGATCTTTGCCCTGACCTTTGGTCTGTCCAAGCTGCTCCAACTGGCGGAG
CTGCAGGCCAAAAGGTATTTCAAGAGCAAAAAGGCGCTGCATCCCAAATC
TGCTGCCAAAGTGCAGGACCCAGTTGTTGAGCAGAAGGCGCCAAGCCAGC
AGGACGATTCGAATCCCTTCGATCTCCTGCAGGACCACAATGAAAATCTG
AAGGAGCAGCTCAGTATCCTGCAGTTGCAGTGTCTGGAAATGCGCGAACT
TCTGCACGAGCTGGATATCAGCAGTAGCTCCAGTAGCTATGGAAGTGTCA
GATCCGGAAACCGGGTAGCAATGGCCAAGTCCTCCGAAGAATCAATGGTG
GTGTGGAGGCGATCGGACTCCCTGACCGGTACGGTCTCCGGCTCATTGCA
CGCCGAAAAGGTCAACTCCCCCTCCACACAAAACATCTACATTACCAACA
GCCACTTCCACATCAACGGACAGGTCTACCTGACCGAGAACCACGTGAAC
GTCGAGCTCACCCAGAACGCTTCTTTGTTCGGTCGGGGGCAGAGCGAGTT
CCTGCAGGTGGCGGGAAGGTTCATCTCCGGACCAAAGAAGATGCCCATGT
TAACGGGCATGCGGTGCCACAACATCCTCATATGAGGAGTCTTCAAAATC
ATCCATTTCACTCGGAATAAACAATGTTACTAGCAAAAAAAAAAAAAAAA
AAAA

AT10054.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7202-RA 1144 CG7202-RA 116..1051 1..936 4680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21480334..21481126 934..142 3965 100 Minus
chr3L 24539361 chr3L 21481512..21481656 145..1 725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:44:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21491397..21492191 936..142 3975 100 Minus
3L 28110227 3L 21492577..21492721 145..1 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21484497..21485291 936..142 3975 100 Minus
3L 28103327 3L 21485677..21485821 145..1 725 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:23:42 has no hits.

AT10054.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:24:26 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21480334..21481122 146..934 100 <- Minus
chr3L 21481512..21481656 1..145 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:22 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 1..870 16..885 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:29 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 1..870 16..885 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:48 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 1..870 16..885 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:04 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 1..870 16..885 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 09:25:08 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 53..937 1..885 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:29 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 53..986 1..934 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:48 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 53..986 1..934 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:04 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
CG7202-RA 53..986 1..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:26 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21491399..21492187 146..934 100 <- Minus
3L 21492577..21492721 1..145 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:26 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21491399..21492187 146..934 100 <- Minus
3L 21492577..21492721 1..145 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:26 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21491399..21492187 146..934 100 <- Minus
3L 21492577..21492721 1..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:48 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21484499..21485287 146..934 100 <- Minus
arm_3L 21485677..21485821 1..145 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:46 Download gff for AT10054.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21484499..21485287 146..934 100 <- Minus
3L 21485677..21485821 1..145 100   Minus

AT10054.pep Sequence

Translation from 0 to 884

> AT10054.pep
KISGIMFECISFLFLAALAFVAWAVLCFQHFVQVQTRLSSDFRVELYTER
PGITFEPQLCHSPSEQSSSDSSDSTYQFATSFGVIFALTFGLSKLLQLAE
LQAKRYFKSKKALHPKSAAKVQDPVVEQKAPSQQDDSNPFDLLQDHNENL
KEQLSILQLQCLEMRELLHELDISSSSSSYGSVRSGNRVAMAKSSEESMV
VWRRSDSLTGTVSGSLHAEKVNSPSTQNIYITNSHFHINGQVYLTENHVN
VELTQNASLFGRGQSEFLQVAGRFISGPKKMPMLTGMRCHNILI*

AT10054.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10711-PA 281 GF10711-PA 1..281 31..294 508 43.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13231-PA 286 GG13231-PA 1..286 6..294 1106 77.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16823-PA 285 GH16823-PA 1..285 6..294 351 34.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7202-PA 289 CG7202-PA 1..289 6..294 1473 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11916-PA 348 GI11916-PA 164..348 100..294 185 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28219-PA 250 GA28219-PA 1..238 6..284 189 26.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22137-PA 286 GM22137-PA 1..286 6..294 1284 89.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12115-PA 286 GD12115-PA 1..286 6..294 1290 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13790-PA 379 GJ13790-PA 1..96 6..104 223 44.4 Plus
Dvir\GJ13790-PA 379 GJ13790-PA 223..379 146..294 202 34 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25695-PA 296 GK25695-PA 1..290 6..288 502 40.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22328-PA 286 GE22328-PA 1..286 6..294 1138 79.9 Plus
Dyak\GE22968-PA 286 GE22968-PA 1..286 6..294 1120 79.2 Plus

AT10054.hyp Sequence

Translation from 0 to 884

> AT10054.hyp
KISGIMFECISFLFLAALAFVAWAVLCFQHFVQVQTRLSSDFRVELYTER
PGITFEPQLCHSPSEQSSSDSSDSTYQFATSFGVIFALTFGLSKLLQLAE
LQAKRYFKSKKALHPKSAAKVQDPVVEQKAPSQQDDSNPFDLLQDHNENL
KEQLSILQLQCLEMRELLHELDISSSSSSYGSVRSGNRVAMAKSSEESMV
VWRRSDSLTGTVSGSLHAEKVNSPSTQNIYITNSHFHINGQVYLTENHVN
VELTQNASLFGRGQSEFLQVAGRFISGPKKMPMLTGMRCHNILI*

AT10054.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7202-PA 289 CG7202-PA 1..289 6..294 1473 100 Plus