Clone AT10852 Report

Search the DGRC for AT10852

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:108
Well:52
Vector:pOTB7
Associated Gene/TranscriptCG14448-RA
Protein status:AT10852.pep: gold
Preliminary Size:618
Sequenced Size:842

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14448 2002-01-01 Sim4 clustering to Release 2
CG14448 2002-02-22 Blastp of sequenced clone
CG14448 2003-01-01 Sim4 clustering to Release 3
CG14448 2008-04-29 Release 5.5 accounting
CG14448 2008-08-15 Release 5.9 accounting
CG14448 2008-12-18 5.12 accounting

Clone Sequence Records

AT10852.complete Sequence

842 bp (842 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084112

> AT10852.complete
CTTTTAATGTAGTTTTAATTTTTGAACTATTCGACCGTGTACATTTAGTA
GTAACATTTTTTTCATATTGGCTAAGGATGAACAAAAGCCAAAAGTCCCT
GGCGGACGACATGGCCTCGACGCCTTTCGGCAAGGAGGTGCTGATTGGCA
ACTGGGCGGAGCGCCGCTACGCAGTCGAGGAGCAGAGCAATGCCATCCTG
CCAGGACTCCGTGTGAGTGGTTGCGAGCTCCATAGGTCGCTCTGCCACGA
CACCTACACTACTGCACCCTTCGTTGGCGCCGAGGCAGTACCCTTGTTTG
TGGATCATCGCAAATTGGCTTACAAGAACTTTATAAGGAATAGGCGATCT
AGCTTGAACCTGGTGGACGATGAGCTACTCAAGAGGAACTTCACTACCAC
CAATACCCTGGAGTTCCAGGAAATTCCTCGACTGCGTCTTATACACGCGA
GTGGCGAAAAGGACAAAAACGGTCCTCCGAAGCAGCCGCTGGACGTGGAC
AGACTGCAAGCCTTCGGAAATCTTACGAAGACACACAATTACCTCTTTCG
GTTCAAGTGCGAGAAAATGCTGGACGAGATCAGTAACATGCAGACCACCT
ACTCCGCGAGCTTTAACCGACCGTGGGAAAAAAAGCCAATCTTTGAATTT
GGTCCAGACTACGACGGAGTCGTTAAGTTTGACTTGACGTGCTAGCAGCC
AGAACTATATTTTCTCCTTAGATTGTGTATAAGAATCTACAAATTTCCTT
ACCAAAAAAATTGCAACCGTCTTCCCAAAGAAACTAGTTCCTCTATATTA
CAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT10852.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14448-RA 809 CG14448-RA 6..809 1..804 4005 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22777351..22778154 1..804 4005 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22788444..22789248 1..805 4010 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22781544..22782348 1..805 4010 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 22:25:54 has no hits.

AT10852.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:27:01 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22777351..22778154 1..804 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:59:11 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 1..618 78..695 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:54 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 1..618 78..695 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:10:58 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 1..618 78..695 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:32 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 1..618 78..695 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:04 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 1..618 78..695 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:10 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 6..809 1..804 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:54 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 6..809 1..804 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:58 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 6..809 1..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:32 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 6..809 1..804 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:04 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
CG14448-RA 6..809 1..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:01 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22788444..22789247 1..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:01 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22788444..22789247 1..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:27:01 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22788444..22789247 1..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:58 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22781544..22782347 1..804 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:04 Download gff for AT10852.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22781544..22782347 1..804 99   Plus

AT10852.hyp Sequence

Translation from 2 to 694

> AT10852.hyp
FNVVLIFELIDRVHLVVTFFSYWLRMNKSQKSLADDMASTPFGKEVLIGN
WAERRYAVEEQSNAILPGLRVSGCELHRSLCHDTYTTAPFVGAEAVPLFV
DHRKLAYKNFIRNRRSSLNLVDDELLKRNFTTTNTLEFQEIPRLRLIHAS
GEKDKNGPPKQPLDVDRLQAFGNLTKTHNYLFRFKCEKMLDEISNMQTTY
SASFNRPWEKKPIFEFGPDYDGVVKFDLTC*

AT10852.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14448-PA 205 CG14448-PA 1..205 26..230 1089 100 Plus

AT10852.pep Sequence

Translation from 77 to 694

> AT10852.pep
MNKSQKSLADDMASTPFGKEVLIGNWAERRYAVEEQSNAILPGLRVSGCE
LHRSLCHDTYTTAPFVGAEAVPLFVDHRKLAYKNFIRNRRSSLNLVDDEL
LKRNFTTTNTLEFQEIPRLRLIHASGEKDKNGPPKQPLDVDRLQAFGNLT
KTHNYLFRFKCEKMLDEISNMQTTYSASFNRPWEKKPIFEFGPDYDGVVK
FDLTC*

AT10852.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10999-PA 206 GF10999-PA 5..206 4..205 775 70.3 Plus
Dana\GF10998-PA 226 GF10998-PA 23..181 17..179 152 28.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16278-PA 206 GG16278-PA 2..206 1..205 1012 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16767-PA 172 GH16767-PA 1..166 12..179 349 43.2 Plus
Dgri\GH15046-PA 181 GH15046-PA 9..169 7..179 183 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14448-PA 205 CG14448-PA 1..205 1..205 1089 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13428-PA 187 GI13428-PA 2..176 10..180 296 35.4 Plus
Dmoj\GI12805-PA 193 GI12805-PA 9..185 7..181 189 30.3 Plus
Dmoj\GI13427-PA 210 GI13427-PA 21..189 17..179 141 26.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24966-PA 208 GL24966-PA 6..208 5..205 543 53.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12995-PA 208 GA12995-PA 6..208 5..205 532 52.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22471-PA 205 GM22471-PA 1..205 1..205 1058 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15052-PA 205 GD15052-PA 1..205 1..205 1054 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11788-PA 177 GJ11788-PA 2..174 10..180 372 44.5 Plus
Dvir\GJ12950-PA 198 GJ12950-PA 9..183 7..179 195 28.4 Plus
Dvir\GJ11787-PA 209 GJ11787-PA 23..188 17..179 146 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20390-PA 215 GK20390-PA 5..215 4..205 433 39.8 Plus
Dwil\GK20389-PA 254 GK20389-PA 29..193 16..179 164 29.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22638-PA 206 GE22638-PA 5..206 4..205 1014 92.1 Plus