Clone AT11025 Report

Search the DGRC for AT11025

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:110
Well:25
Vector:pOTB7
Associated Gene/Transcriptfan-RA
Protein status:AT11025.pep: gold
Preliminary Size:647
Sequenced Size:896

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7919 2002-01-01 Sim4 clustering to Release 2
CG7919 2002-02-22 Blastp of sequenced clone
CG7919 2003-01-01 Sim4 clustering to Release 3
fan 2008-04-29 Release 5.5 accounting
fan 2008-08-15 Release 5.9 accounting
fan 2008-12-18 5.12 accounting

Clone Sequence Records

AT11025.complete Sequence

896 bp (896 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084113

> AT11025.complete
AAGGAACGTGTTCATTTGGTACCACATTTTTTTCATATATTGGTCATAAT
CGGTTCCAGTTCATATCGCTTCCGATTTTTTGAAAAATAAAAAGGTACAA
ATATTCCAATATGTCCGACAATACCGAGAGCAAACTTGCGCTAGACCCGT
GCGATGTGATCGTCTTTGAGGGACCATTCAACCGCTCGGTGAGCAGGAAG
CTAGTCATCAAGAACACCAGTAAGACCCAGCGAATGGCCTTCAAGATGAA
GACCACCACTCCAAAACTTTTTTATGTACGCCCCAACATCGGTGTCTTGG
GGCCCGAGCAGAAGGTCAGCGTTGACATATTCATGCAGCCAATTCTGCAG
GAGCAGATAAAGAAGCGTCATAAGTTCCTTCTCCTGGCCGCCGAGGTGAC
TGGTGACATAAGCGATGTGCAGGAGTTTTGGAAGATGCAGAACCCGAATG
AAACTCGGGAAACCAAGATCAAATGTGAGCTAGTCCCTTCGAAGGAGGAC
GATTTCCGTCAGGCGGGAGGTTCAGCTGTAATATCCACGGACAACAAGGA
CGGAGAGGTCCATTTTGATGCCCAGGAAGTCAGTGAGCCAATGGCCAAGT
TGCTCAAGCAAGTCAGCATGCTGGAGGACGAGCATATGGCCCTCACAGAC
CAGATCGACGGCTTGCGTGACCAGGCGATTGGGCGCACTTTCTTCTACAT
GGCCGCCATAGTAATCATTATACTGTCCGCTGTCGCAGGCGCCTATTATG
GCAAGACTCGTTTGTAAATTCCTTATCATGGCAGTTTTTAGAACATAAGG
CAGTAAATTGCACCGAAATTGTACGAAAATTATTTGTCAATAAAGGACAT
TTTGGTTGCATATTCTATTTTGAGATAAAAAAAAAAAAAAAAAAAA

AT11025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
fan-RA 880 fan-RA 3..876 3..877 4335 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8101219..8102091 3..876 4320 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8109171..8110044 3..877 4325 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8102271..8103144 3..877 4335 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 05:56:05 has no hits.

AT11025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:57:11 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8101217..8102091 1..876 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:59:30 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..657 111..767 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:54 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..657 111..767 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:44 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..657 111..767 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:57 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..657 111..767 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:11:51 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..657 111..767 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:06:42 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..875 2..876 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:54 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 38..912 1..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:44 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 38..912 1..876 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:58 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 1..875 2..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:11:51 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
fan-RA 38..912 1..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:11 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8109169..8110043 1..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:11 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8109169..8110043 1..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:11 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8109169..8110043 1..876 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:44 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8102269..8103143 1..876 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:45:20 Download gff for AT11025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8102269..8103143 1..876 99   Plus

AT11025.pep Sequence

Translation from 110 to 766

> AT11025.pep
MSDNTESKLALDPCDVIVFEGPFNRSVSRKLVIKNTSKTQRMAFKMKTTT
PKLFYVRPNIGVLGPEQKVSVDIFMQPILQEQIKKRHKFLLLAAEVTGDI
SDVQEFWKMQNPNETRETKIKCELVPSKEDDFRQAGGSAVISTDNKDGEV
HFDAQEVSEPMAKLLKQVSMLEDEHMALTDQIDGLRDQAIGRTFFYMAAI
VIIILSAVAGAYYGKTRL*

AT11025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23956-PA 227 GF23956-PA 6..227 9..218 621 55.4 Plus
Dana\GF22260-PA 276 GF22260-PA 1..124 1..122 216 37.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14468-PA 232 GG14468-PA 1..232 1..218 868 71.2 Plus
Dere\GG18683-PA 273 GG18683-PA 10..145 9..141 214 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14992-PA 241 GH14992-PA 6..241 9..218 278 30 Plus
Dgri\GH24467-PA 269 GH24467-PA 8..126 6..122 202 35 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
fan-PA 218 CG7919-PA 1..218 1..218 1106 100 Plus
Vap33-PE 269 CG5014-PE 10..145 9..140 210 35 Plus
Vap33-PC 269 CG5014-PC 10..145 9..140 210 35 Plus
Vap33-PB 269 CG5014-PB 10..145 9..140 210 35 Plus
Vap33-PA 235 CG5014-PA 10..234 9..213 208 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13153-PA 220 GI13153-PA 2..217 9..215 396 35.6 Plus
Dmoj\GI16484-PA 269 GI16484-PA 8..136 6..131 210 35.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26519-PA 249 GL26519-PA 1..201 1..189 350 40 Plus
Dper\GL25412-PA 240 GL25412-PA 1..192 1..189 305 34.2 Plus
Dper\GL14766-PA 263 GL14766-PA 5..141 4..137 232 37.7 Plus
Dper\GL24786-PA 201 GL24786-PA 1..149 1..147 196 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28892-PA 249 GA28892-PA 1..201 1..189 348 40 Plus
Dpse\GA28611-PA 240 GA28611-PA 1..192 1..189 305 34.9 Plus
Dpse\GA18596-PA 263 GA18596-PA 5..141 4..137 232 37.7 Plus
Dpse\GA28912-PA 220 GA28912-PA 1..214 1..212 219 29.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25016-PA 218 GM25016-PA 1..218 1..218 1065 88.5 Plus
Dsec\GM12317-PA 251 GM12317-PA 10..117 9..131 178 35.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14051-PA 218 GD14051-PA 1..218 1..218 1060 87.6 Plus
Dsim\GD16666-PA 235 GD16666-PA 10..133 9..129 212 37.6 Plus
Dsim\GD13915-PA 240 GD13915-PA 28..141 1..115 141 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11927-PA 228 GJ11927-PA 7..226 5..216 449 38.5 Plus
Dvir\GJ16028-PA 267 GJ16028-PA 8..134 6..128 211 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19945-PA 199 GK19945-PA 1..192 46..212 287 34.9 Plus
Dwil\GK10259-PA 237 GK10259-PA 10..202 9..187 220 30.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\fan-PA 229 GE21656-PA 1..226 1..215 884 73.5 Plus
Dyak\GE16322-PA 269 GE16322-PA 8..146 6..141 201 33.6 Plus

AT11025.hyp Sequence

Translation from 110 to 766

> AT11025.hyp
MSDNTESKLALDPCDVIVFEGPFNRSVSRKLVIKNTSKTQRMAFKMKTTT
PKLFYVRPNIGVLGPEQKVSVDIFMQPILQEQIKKRHKFLLLAAEVTGDI
SDVQEFWKMQNPNETRETKIKCELVPSKEDDFRQAGGSAVISTDNKDGEV
HFDAQEVSEPMAKLLKQVSMLEDEHMALTDQIDGLRDQAIGRTFFYMAAI
VIIILSAVAGAYYGKTRL*

AT11025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
fan-PA 218 CG7919-PA 1..218 1..218 1106 100 Plus
Vap-33A-PE 269 CG5014-PE 10..145 9..140 210 35 Plus
Vap-33A-PC 269 CG5014-PC 10..145 9..140 210 35 Plus
Vap-33A-PB 269 CG5014-PB 10..145 9..140 210 35 Plus
Vap-33A-PA 235 CG5014-PA 10..234 9..213 208 27.8 Plus