Clone AT11052 Report

Search the DGRC for AT11052

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:110
Well:52
Vector:pOTB7
Associated Gene/TranscriptCG30416-RB
Protein status:AT11052.pep: gold
Preliminary Size:1828
Sequenced Size:1889

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30416 2002-09-24 Blastp of sequenced clone
CG30416 2003-01-01 Sim4 clustering to Release 3
CG30416 2008-04-29 Release 5.5 accounting
CG30416 2008-08-15 Release 5.9 accounting
CG30416 2008-12-18 5.12 accounting

Clone Sequence Records

AT11052.complete Sequence

1889 bp (1889 high quality bases) assembled on 2002-09-24

GenBank Submission: BT001295

> AT11052.complete
GTTTTACTGAAAAAATTGTGTGTGCTGGGTGCCTAGAATCCTATTTGAAC
GTTGTTCGATGATTTCTTGTCCGGAATTGCTATTCAAATCCTGTGATTCA
GGACGATGGACTACAGAGCGATGAATGAATCCTGCCAATGTCCACGGTGT
CGGTATGAACTTCGTTTGCCCAATCAGCCGATGCCCTGCCAAGAGAAATG
TTTCCCGGAGAAATATCTGATGTGTGGTTCGGATCTACGTCCTCGCTGGC
AGAACAGACCAGATCCTCGGGAAGTTTTTCAGAATTTTTCCCAAAGAAAT
CCTCAAATACTTTCTCAGGAATCTGTTCAGAGTTGGAGTTTCCAGCATCC
TCAAAACTGTTTCTGTGGACATCAACCTCCAATGCGAGCTCTGCCCGACC
ATTCTCAGCAATTTTCCCAAGAATATTCTCAGCAGTGTTCGCAACAATCT
CCTTGTGTTTCTCGTTGTGGCCAACAAAATCGACAGAACTGCTTTCAGCC
GCCTTGTCCAAACTGGACCAGACCATGTTGTTGCATAACCCACGAAGTCG
GCGTTCAAACGGACGAGATGGACGAATGCGAGCCCGAGTATATAGCGATC
ACCGACATCACCACAAAGGAGATGAAGGTGAAGCATCGCACCGGAAAGAC
GGAGACGATCATCGAAAAGGTTCAGTCGGTCACCCAGTTTCCCGTGACGG
AAACTCAGCGCCTTGGGGAGAATGATTACGAACCAAAGTACGTCCAAGAC
AAGGATGCAATTCCTTATCGAGCCATGAGGCATTCCGAGCTGGAGCCCTT
GCTGGTGTCGATGAGGGCGGAGGTGCCAATAACTGAATCTAAAGATGCAA
AGGAGGAGATCGTCTACCAGGAATATGAGAAGACGGAGCGCGATTTTGAT
GACCCTAAAGCCAAGGTAGAGAAGACCATCATCAAGGTCAAAATTCCGGT
GGACTCACCCGAAGCCGAAGAATCGAACTCCAGCCCGCCCAGTGGTATAC
CACCTCCTTCCCAACTGCCCAGCGATATACCACCTCCTTCCCAACTGCCC
AGCGATATACCACCTCCTTCCCAACTGCCCAGCGATATACCACCGCCATC
CCAACTGCCCAGTGGTACACCACCTCCTTCCCGACTGCCTACTAGTATAA
CCCCTCCTTCCCAAGTGCCAAACAAGGATTCATCCCAGCCATCACTACCA
ACAGACATTTCCTCAATTTCGGAGGAAGATCCATCACTTGTCAAGAATGA
AGATACAAGTTCGACAGATCTCGATGTATATGACCAGAAGGAATCAGTAG
AGAAGGAGATGAATGAAGGGCATTCCGAATCTGACATCGTGAGTACCGTG
CAGGTAAAGGTCACCAATAGAAAGGAGGCATCCGTGAGGGGTCATCATGA
CCGGGAGCCCAAGAAAACAGCGATCTTCGAGAGCAGCGTGTCCCAGGTGC
TAATAAAGAAGCCTGAGAAGAAACCGGAAGAAAAAAAACCGAAGCGACCG
CCACCCAAAGTGGAAGTCAAGCTAGGCTATCCACCAAACGACTTGGTCTG
CAGATACGCCAATCCTCCGCGATGCAGACCTAAATGCGACAGCTGCAGAT
GTCCTTGTCCGCCGTCCATCTCCTGCAACCAATGTCCTCCCTGTGCCCCC
AGCACATGCCAATGCGATCCCATCTACGGTTTCGGCGGCAAGTGTGTCGG
ATACTATTGTATTTAAAAATGTTCCAAAAATACTACAAGTGACCAATTAA
CTAAAACAGTTTCAAATCGCATTACCAACTATAAAATATTCCAAAAATCT
AGATACATAAATCACTACTTTCGAAATATATGGATGTTTTAAGACGCCAT
TATGTCATATCTTGAAGAAAAAAAAAAAAAAAAAAAAAA

AT11052.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30416-RB 1961 CG30416-RB 118..1961 1..1844 9130 99.6 Plus
CG30416.c 1953 CG30416.c 118..1953 1..1844 8985 99.2 Plus
CG30416.b 1970 CG30416.b 118..1377 1..1260 6285 99.9 Plus
CG30416.b 1970 CG30416.b 1384..1970 1258..1844 2860 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19208487..19209745 1259..1 6295 100 Minus
chr2R 21145070 chr2R 19207826..19208412 1844..1258 2875 99.3 Minus
chr2R 21145070 chr2R 19208577..19208729 1139..987 495 88.2 Minus
chr2R 21145070 chr2R 19208607..19208759 1169..1017 495 88.2 Minus
chr2R 21145070 chr2R 19208607..19208699 1079..987 345 91.4 Minus
chr2R 21145070 chr2R 19208667..19208759 1139..1047 345 91.4 Minus
chr2R 21145070 chr2R 19208577..19208669 1079..987 225 82.8 Minus
chr2R 21145070 chr2R 19208667..19208759 1169..1077 225 82.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23322141..23323399 1259..1 6280 99.9 Minus
2R 25286936 2R 23321480..23322066 1844..1258 2860 99.1 Minus
2R 25286936 2R 23322231..23322383 1139..987 495 88.2 Minus
2R 25286936 2R 23322261..23322413 1169..1017 495 88.2 Minus
2R 25286936 2R 23322261..23322353 1079..987 345 91.4 Minus
2R 25286936 2R 23322321..23322413 1139..1047 345 91.4 Minus
2R 25286936 2R 23322321..23322413 1169..1077 225 82.8 Minus
2R 25286936 2R 23322231..23322323 1079..987 225 82.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23323340..23324598 1259..1 6280 99.9 Minus
2R 25260384 2R 23322679..23323265 1844..1258 2860 99.1 Minus
Blast to na_te.dros performed on 2019-03-16 05:56:21 has no hits.

AT11052.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:57:18 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19207823..19208410 1260..1851 98 <- Minus
chr2R 19208487..19209745 1..1259 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:59:35 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RA 1..1620 106..1716 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:50 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RB 1..1611 106..1716 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:52 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RB 1..1611 106..1716 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:53 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RA 1..1620 106..1716 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:12:06 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RB 1..1611 106..1716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:36:43 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RA 12..1828 1..1808 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:50 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RB 1..1844 1..1844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:52 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RB 1..1843 1..1843 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:53 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RA 12..1828 1..1808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:12:06 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
CG30416-RB 1..1843 1..1843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:18 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23321477..23322064 1260..1851 98 <- Minus
2R 23322141..23323399 1..1259 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:18 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23321477..23322064 1260..1851 98 <- Minus
2R 23322141..23323399 1..1259 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:57:18 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23321477..23322064 1260..1851 98 <- Minus
2R 23322141..23323399 1..1259 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:52 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19209000..19209587 1260..1851 98 <- Minus
arm_2R 19209664..19210922 1..1259 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:36:39 Download gff for AT11052.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23322694..23323281 1260..1851 98 <- Minus
2R 23323358..23324616 1..1259 99   Minus

AT11052.pep Sequence

Translation from 105 to 1715

> AT11052.pep
MDYRAMNESCQCPRCRYELRLPNQPMPCQEKCFPEKYLMCGSDLRPRWQN
RPDPREVFQNFSQRNPQILSQESVQSWSFQHPQNCFCGHQPPMRALPDHS
QQFSQEYSQQCSQQSPCVSRCGQQNRQNCFQPPCPNWTRPCCCITHEVGV
QTDEMDECEPEYIAITDITTKEMKVKHRTGKTETIIEKVQSVTQFPVTET
QRLGENDYEPKYVQDKDAIPYRAMRHSELEPLLVSMRAEVPITESKDAKE
EIVYQEYEKTERDFDDPKAKVEKTIIKVKIPVDSPEAEESNSSPPSGIPP
PSQLPSDIPPPSQLPSDIPPPSQLPSDIPPPSQLPSGTPPPSRLPTSITP
PSQVPNKDSSQPSLPTDISSISEEDPSLVKNEDTSSTDLDVYDQKESVEK
EMNEGHSESDIVSTVQVKVTNRKEASVRGHHDREPKKTAIFESSVSQVLI
KKPEKKPEEKKPKRPPPKVEVKLGYPPNDLVCRYANPPRCRPKCDSCRCP
CPPSISCNQCPPCAPSTCQCDPIYGFGGKCVGYYCI*

AT11052.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13299-PA 537 GF13299-PA 418..536 410..533 160 39.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20047-PA 368 GG20047-PA 4..368 157..536 1095 65.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG30416-PB 536 CG30416-PB 1..536 1..536 2954 100 Plus
CG30416-PC 539 CG30416-PC 1..539 1..536 2940 99.4 Plus
CG11835-PD 795 CG11835-PD 308..630 154..517 175 22.8 Plus
CG11835-PC 795 CG11835-PC 308..630 154..517 175 22.8 Plus
CG11835-PB 795 CG11835-PB 308..630 154..517 175 22.8 Plus
CG11835-PA 795 CG11835-PA 308..630 154..517 175 22.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15562-PA 548 GM15562-PA 1..548 1..536 2231 84.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25063-PA 414 GD25063-PA 4..414 130..536 1566 82.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11583-PA 564 GE11583-PA 1..564 1..536 1476 62.4 Plus

AT11052.hyp Sequence

Translation from 105 to 1715

> AT11052.hyp
MDYRAMNESCQCPRCRYELRLPNQPMPCQEKCFPEKYLMCGSDLRPRWQN
RPDPREVFQNFSQRNPQILSQESVQSWSFQHPQNCFCGHQPPMRALPDHS
QQFSQEYSQQCSQQSPCVSRCGQQNRQNCFQPPCPNWTRPCCCITHEVGV
QTDEMDECEPEYIAITDITTKEMKVKHRTGKTETIIEKVQSVTQFPVTET
QRLGENDYEPKYVQDKDAIPYRAMRHSELEPLLVSMRAEVPITESKDAKE
EIVYQEYEKTERDFDDPKAKVEKTIIKVKIPVDSPEAEESNSSPPSGIPP
PSQLPSDIPPPSQLPSDIPPPSQLPSDIPPPSQLPSGTPPPSRLPTSITP
PSQVPNKDSSQPSLPTDISSISEEDPSLVKNEDTSSTDLDVYDQKESVEK
EMNEGHSESDIVSTVQVKVTNRKEASVRGHHDREPKKTAIFESSVSQVLI
KKPEKKPEEKKPKRPPPKVEVKLGYPPNDLVCRYANPPRCRPKCDSCRCP
CPPSISCNQCPPCAPSTCQCDPIYGFGGKCVGYYCI*

AT11052.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30416-PB 536 CG30416-PB 1..536 1..536 2954 100 Plus
CG30416-PC 539 CG30416-PC 1..539 1..536 2940 99.4 Plus
CG11835-PD 795 CG11835-PD 308..630 154..517 175 22.8 Plus
CG11835-PC 795 CG11835-PC 308..630 154..517 175 22.8 Plus
CG11835-PB 795 CG11835-PB 308..630 154..517 175 22.8 Plus