Clone AT11165 Report

Search the DGRC for AT11165

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:111
Well:65
Vector:pOTB7
Associated Gene/TranscriptCG9643-RA
Protein status:AT11165.pep: gold
Preliminary Size:660
Sequenced Size:904

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9643 2002-01-01 Sim4 clustering to Release 2
CG9643 2002-02-22 Blastp of sequenced clone
CG9643 2003-01-01 Sim4 clustering to Release 3
CG9643 2008-04-29 Release 5.5 accounting
CG9643 2008-08-15 Release 5.9 accounting
CG9643 2008-12-18 5.12 accounting

Clone Sequence Records

AT11165.complete Sequence

904 bp (904 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089308

> AT11165.complete
AAAGCATCCCCCTATATTTAAATTGTTTACAGAATAAAATTCCCCAAATT
CAGATTTTTCTCGTTCCATTTTCGAAACCAACCTTACGGCGCTATCTTGA
CCCGACGCACATGCATCTGCGGCTCAGCTGTTTCGAACTTCGAAAACATT
TGCCTCCGCGTTTGATTTGATTGCTGCGGATTAATTACAAAATAACCACG
AAATAATGGATAGCGAGCTGAACGGATCGGAACTTGGCACCAAGGAATTT
TGGGAGTCCAGCTACAACCGGGAGATACGAAACTACAAGAGCCACGGCGA
CGTGGGCGAGATCTGGTTTGACGAAAGTGCCCAATGGCGAACGATCGACT
GGCTGCTTAACGAGGAGAAGATCGACAAGGAGGCGAGTCGAGTGCTGGAC
CTGGGCTGCGGCAATGGCATGTTCCTAGTGGGCCTGGCAAATGAAGGCTT
CACCGGAGACCTGACCGGCGTGGACTACTCTCCCAAAGCCGTCGAGCTGG
CGCAAAACATTGCGGAGGATAACAAGCTGAGCATCACATACAAGGTGGCG
GACTTAACCCAGCCGCAGAACGAGCTGGGCCAATTTGACGTGGTGCACGA
CAAGGGAACCTACGATGCAGTCAGTCTTTGTCCGGATAATGCCAAGGAGA
AACGTGCTCTCTACCTGGACACGGTGGAGAAGTTGCTGCGAACTGCTGAC
AGCCTGTTTGTAATCACGTCGTGCAATTGGACCGAGGACGAGCTGGTGGA
TAGCTTTGCCGAGAAGTTTGTCAAGTACTATACCATTCCCACGCCGACCT
TTAAGTTTGGCGGCAAGGTGGGCAATGTGGTAACCTCAATTGTTTTCAAA
AGGAAAAAGGAATAAACATGTTGTATCTCAAAGTGAAAAAAAAAAAAAAA
AAAA

AT11165.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9643-RA 885 CG9643-RA 1..885 1..885 4410 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2978162..2979046 885..1 4425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2978524..2979410 887..1 4420 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2978524..2979410 887..1 4420 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 18:43:29 has no hits.

AT11165.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:44:27 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2978162..2979046 1..885 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:59:41 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..660 206..865 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:56 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..660 206..865 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:54 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..660 206..865 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:58 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..660 206..865 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:09 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..660 206..865 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:06:44 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..885 1..885 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:56 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..885 1..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:54 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..763 123..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:58 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..885 1..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:09 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
CG9643-RA 1..763 123..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:27 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2978526..2979410 1..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:27 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2978526..2979410 1..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:44:27 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2978526..2979410 1..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:54 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2978526..2979410 1..885 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:45:21 Download gff for AT11165.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2978526..2979410 1..885 99   Minus

AT11165.pep Sequence

Translation from 205 to 864

> AT11165.pep
MDSELNGSELGTKEFWESSYNREIRNYKSHGDVGEIWFDESAQWRTIDWL
LNEEKIDKEASRVLDLGCGNGMFLVGLANEGFTGDLTGVDYSPKAVELAQ
NIAEDNKLSITYKVADLTQPQNELGQFDVVHDKGTYDAVSLCPDNAKEKR
ALYLDTVEKLLRTADSLFVITSCNWTEDELVDSFAEKFVKYYTIPTPTFK
FGGKVGNVVTSIVFKRKKE*

AT11165.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14906-PA 214 GF14906-PA 1..214 1..217 917 80.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24471-PA 219 GG24471-PA 1..219 1..219 1101 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20919-PA 218 GH20919-PA 2..216 4..217 797 69.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9643-PB 219 CG9643-PB 1..219 1..219 1154 100 Plus
CG9643-PA 219 CG9643-PA 1..219 1..219 1154 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18358-PA 217 GI18358-PA 2..215 4..217 826 70.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26704-PA 216 GL26704-PA 1..216 1..217 899 75.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21936-PA 216 GA21936-PA 1..216 1..217 899 75.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18180-PA 219 GM18180-PA 1..219 1..219 1140 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22788-PA 219 GD22788-PA 1..219 1..219 1130 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21427-PA 215 GJ21427-PA 2..215 4..217 830 72.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15575-PA 221 GK15575-PA 1..219 1..216 850 72.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14969-PA 219 GE14969-PA 1..219 1..219 1093 93.2 Plus

AT11165.hyp Sequence

Translation from 205 to 864

> AT11165.hyp
MDSELNGSELGTKEFWESSYNREIRNYKSHGDVGEIWFDESAQWRTIDWL
LNEEKIDKEASRVLDLGCGNGMFLVGLANEGFTGDLTGVDYSPKAVELAQ
NIAEDNKLSITYKVADLTQPQNELGQFDVVHDKGTYDAVSLCPDNAKEKR
ALYLDTVEKLLRTADSLFVITSCNWTEDELVDSFAEKFVKYYTIPTPTFK
FGGKVGNVVTSIVFKRKKE*

AT11165.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9643-PB 219 CG9643-PB 1..219 1..219 1154 100 Plus
CG9643-PA 219 CG9643-PA 1..219 1..219 1154 100 Plus