Clone AT11330 Report

Search the DGRC for AT11330

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:113
Well:30
Vector:pOTB7
Associated Gene/Transcriptab-RC
Protein status:AT11330.pep: wuzgold
Sequenced Size:1428

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4807 2003-02-13 Blastp of sequenced clone
ab 2008-04-29 Release 5.5 accounting
ab 2008-08-15 Release 5.9 accounting
ab 2008-12-18 5.12 accounting

Clone Sequence Records

AT11330.complete Sequence

1428 bp (1428 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003807

> AT11330.complete
AAAAACAAGTAAACCAAAGTTGAGCATTAAAAAGTGAAGAAAAAACAATG
AAAAACTGAAAACGATTTGTATTAGAGAAAGTTCAAAATTCAAGGATAAT
GTTTTTTGTTGATTTTTTTGTTTTGTTCACTAAACTGTAATTCGAATCAA
TTGGCGGCATAACACTCCAAGAGCAGACATACGTAAAAAGTTTCCCGACG
CTCCCTGGAAATGCGAGTCCGAGCCACAGATCCGCGTCCCTGCCCCAAGT
GCGGAAAAATCTACCGCTCCGCCCACACGCTACGCACCCATCTGGAGGAC
AAGCACACCGTGTGCCCCGGCTATCGATGTGTGCTCTGCGGCACGGTGGC
CAAGTCCCGCAACTCTTTGCACTCGCATATGTCGCGCCAACATCGCGGCA
TCTCCACCAAGGACCTGCCCGTCCTGCCCATGCCCAGTGCTTTCGATCCA
GAGCTCGCCTCGCGCCTTCTGGCCAAGGCGGGCGTCAAGATCTCACCCGC
TGAGCTGAGGGCCAGAGCCTCGCCCACCGGCGGAAGTGGCAGCAGCGGCG
GAGGCGGCGGAGGTGGTAGCAGCCAGGCCAAGTTGGATTTAAGCAACGCT
AGCGGTGGACCCATGGACGATGCCGAGGACTCGGACGACGATCCCGAGGA
CCTGACCACGGGCAACGGATTGTATGGAATGGGCGGAAGCAGCAGCGACC
TGAGCCGTTACCACGAGAGCCTGTTGAGCAACTTCGGTCACGCCAGGATG
CGAAATGAGGCGGCTGCCGTGGCGGCCACTGCAGCTGCTCTTGGTCAACC
CAAGGACTTGGGCGTTCAGCTGCCAAACAGCAACGCGCCTGGGCAATCCC
TGCTGGACACCTATCTGCAGTTCATCACGGAGAATACATTCGGCATGGGC
ATGTCCCAGGAGCAGGCCGCTGCAGCAGCACTGCGCGCCAAGATGGCCCA
GCTTAACGCGATGGGACACAGTCTGGACAACCTGCCGCCGGGCCTTCTTC
CCGGACAATTCGACCTGAGCAAGCTGGCCGCCGGAAATCCCGCCTTTGGA
CAGAGCGGACCCGGACTAACCATTGAGCCGATAATGCGACACGAACAGGC
AGCGGGAAACCTCTCGCCGAACCGACCACTGGCTCTCAACTCGGGCGGCA
GGATGATGGGTCACGATGAAATGGCGGAAAATGATGGCGACATGCGGCGG
GAAGGTTCGGAACCCATGGATCTGGGCCTGGACAACAACCAGTCGGGCAG
CAACCATGAGGTGGCCAACTCCGATGCCGAGGAGAACTACTCGGAGGATG
AGGGAGTGCACAACACATAGGAGGAGCAAGAGACTCCAGCGAGGGAACCA
CGAATATGAACATGAACATGAACATAAACAAATGTATACCGATTACCCAT
GGAACATATGTAAAAAAAAAAAAAAAAA

AT11330.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
ab-RC 1553 ab-RC 2..1414 1..1413 7065 100 Plus
ab-RB 5013 ab-RB 2357..3580 190..1413 6120 100 Plus
ab-RD 4885 ab-RD 2357..3580 190..1413 6120 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11256948..11257652 189..893 3510 99.9 Plus
chr2L 23010047 chr2L 11257717..11258236 892..1411 2585 99.8 Plus
chr2L 23010047 chr2L 11256346..11256540 1..195 960 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11258213..11258917 189..893 3525 100 Plus
2L 23513712 2L 11258982..11259503 892..1413 2610 100 Plus
2L 23513712 2L 11257611..11257805 1..195 960 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11258213..11258917 189..893 3525 100 Plus
2L 23513712 2L 11258982..11259503 892..1413 2610 100 Plus
2L 23513712 2L 11257611..11257805 1..195 960 99.4 Plus
Blast to na_te.dros performed on 2019-03-16 08:41:00 has no hits.

AT11330.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:41:58 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11256346..11256535 1..190 100 -> Plus
chr2L 11256950..11257651 191..892 99 -> Plus
chr2L 11257718..11258236 893..1411 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:59:50 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RD 1555..2685 190..1320 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:06 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RD 1555..2685 190..1320 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:53:10 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RA 1585..2715 190..1320 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:13 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RA 1585..2715 190..1320 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:04 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RA 1585..2715 190..1320 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:05:57 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RC 1..1411 1..1411 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:05 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RC 1..1411 1..1411 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:10 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RA 2364..3585 190..1411 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:13 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RA 2339..3560 190..1411 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:04 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
ab-RA 2364..3585 190..1411 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:58 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11257611..11257800 1..190 100 -> Plus
2L 11258215..11258916 191..892 100 -> Plus
2L 11258983..11259501 893..1411 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:58 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11257611..11257800 1..190 100 -> Plus
2L 11258215..11258916 191..892 100 -> Plus
2L 11258983..11259501 893..1411 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:58 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11257611..11257800 1..190 100 -> Plus
2L 11258215..11258916 191..892 100 -> Plus
2L 11258983..11259501 893..1411 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:10 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11257611..11257800 1..190 100 -> Plus
arm_2L 11258215..11258916 191..892 100 -> Plus
arm_2L 11258983..11259501 893..1411 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:00 Download gff for AT11330.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11258215..11258916 191..892 100 -> Plus
2L 11258983..11259501 893..1411 100   Plus
2L 11257611..11257800 1..190 100 -> Plus

AT11330.hyp Sequence

Translation from 210 to 1319

> AT11330.hyp
MRVRATDPRPCPKCGKIYRSAHTLRTHLEDKHTVCPGYRCVLCGTVAKSR
NSLHSHMSRQHRGISTKDLPVLPMPSAFDPELASRLLAKAGVKISPAELR
ARASPTGGSGSSGGGGGGGSSQAKLDLSNASGGPMDDAEDSDDDPEDLTT
GNGLYGMGGSSSDLSRYHESLLSNFGHARMRNEAAAVAATAAALGQPKDL
GVQLPNSNAPGQSLLDTYLQFITENTFGMGMSQEQAAAAALRAKMAQLNA
MGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSGPGLTIEPIMRHEQAAGN
LSPNRPLALNSGGRMMGHDEMAENDGDMRREGSEPMDLGLDNNQSGSNHE
VANSDAEENYSEDEGVHNT*

AT11330.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
ab-PF 894 CG43860-PF 526..894 1..369 1929 100 Plus
ab-PD 894 CG43860-PD 526..894 1..369 1929 100 Plus
ab-PB 894 CG43860-PB 526..894 1..369 1929 100 Plus
ab-PA 904 CG43860-PA 536..904 1..369 1929 100 Plus

AT11330.pep Sequence

Translation from 210 to 1319

> AT11330.pep
MRVRATDPRPCPKCGKIYRSAHTLRTHLEDKHTVCPGYRCVLCGTVAKSR
NSLHSHMSRQHRGISTKDLPVLPMPSAFDPELASRLLAKAGVKISPAELR
ARASPTGGSGSSGGGGGGGSSQAKLDLSNASGGPMDDAEDSDDDPEDLTT
GNGLYGMGGSSSDLSRYHESLLSNFGHARMRNEAAAVAATAAALGQPKDL
GVQLPNSNAPGQSLLDTYLQFITENTFGMGMSQEQAAAAALRAKMAQLNA
MGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSGPGLTIEPIMRHEQAAGN
LSPNRPLALNSGGRMMGHDEMAENDGDMRREGSEPMDLGLDNNQSGSNHE
VANSDAEENYSEDEGVHNT*

AT11330.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14766-PA 1267 GF14766-PA 892..1267 1..369 1506 90.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23712-PA 904 GG23712-PA 534..904 1..369 1928 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13387-PA 920 GH13387-PA 527..920 1..369 1169 75.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
ab-PF 894 CG43860-PF 526..894 1..369 1929 100 Plus
ab-PD 894 CG43860-PD 526..894 1..369 1929 100 Plus
ab-PA 904 CG43860-PA 536..904 1..369 1929 100 Plus
ab-PB 894 CG43860-PB 526..894 1..369 1929 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20650-PA 894 GI20650-PA 496..894 1..369 1117 71.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19550-PA 895 GL19550-PA 520..895 1..369 1537 87.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26004-PA 394 GA26004-PA 19..394 1..369 1529 87.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18962-PA 893 GM18962-PA 525..893 1..369 1958 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ab-PA 891 GD23771-PA 523..891 1..369 1963 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13245-PA 872 GJ13245-PA 489..872 1..369 1196 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14898-PA 905 GK14898-PA 507..905 1..369 1205 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ab-PA 897 GE18519-PA 529..897 1..369 1917 97.3 Plus