Clone AT11334 Report

Search the DGRC for AT11334

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:113
Well:34
Vector:pOTB7
Associated Gene/TranscriptCG5435-RA
Protein status:AT11334.pep: gold
Preliminary Size:678
Sequenced Size:952

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5435 2002-01-01 Sim4 clustering to Release 2
CG5435 2002-05-17 Blastp of sequenced clone
CG5435 2003-01-01 Sim4 clustering to Release 3
CG5435 2008-04-29 Release 5.5 accounting
CG5435 2008-08-15 Release 5.9 accounting
CG5435 2008-12-18 5.12 accounting

Clone Sequence Records

AT11334.complete Sequence

952 bp (952 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118683

> AT11334.complete
CCTCGTGCCGGGAAACCGAAGGCAAAATCACATATACCCAAGTCCTTCTG
AATACGATTCAGAAACCCTTTTACACTTTCATCTAAATTATATTGGTTGC
TCCTGCAAAGATGATTCAGTACGATACTGTGCAGATCAAGAATGTATCAT
GGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTTCCAGAG
CCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGGCCATCT
GGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGGTGCGCT
CGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACGCTGGAC
TTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCCGGACAA
GGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTAGCTGGT
CAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCATTTCGG
GTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGTATTGGG
TCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGCACAGCG
TGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAATGGATTC
TCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATTAGTTCCACAAATC
TGTGTTTGCTTTCCCAGAAAGAATACCATTTTGCGTTTTGGGTTTTACAA
ACATTATTGGAAATAAATTTGGGACACAGAAGCAGTCGTCACGCAGTCGC
CTCCAGCTTGGGCTGCTTGGGCAGGTGCTCCACATCTCCATCATACTCAT
CCACTGCTTGTGGAGTGTCCTGTTGGTCATCCTCCGCCTGTTGCTCCGAC
GCTTTGTGACGCTGTTTCTTGTTCTGGTTACGATAAAAAAAAAAAAAAAA
AA

AT11334.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RA 978 CG5435-RA 50..978 6..934 4600 99.6 Plus
CG6388-RA 1838 CG6388-RA 1633..1838 935..730 1030 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12428900..12429317 568..151 2090 100 Minus
chr2L 23010047 chr2L 12428450..12428818 934..566 1845 100 Minus
chr2L 23010047 chr2L 12429369..12429515 152..6 735 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 568..151 2090 100 Minus
2L 23513712 2L 12429826..12430195 935..566 1820 99.5 Minus
2L 23513712 2L 12430746..12430892 152..6 720 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 568..151 2090 100 Minus
2L 23513712 2L 12429826..12430195 935..566 1820 99.4 Minus
2L 23513712 2L 12430746..12430892 152..6 720 99.3 Minus
Blast to na_te.dros performed on 2019-03-15 17:39:54 has no hits.

AT11334.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:44 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12428450..12428816 568..934 100 <- Minus
chr2L 12428901..12429316 152..567 100 <- Minus
chr2L 12429370..12429516 1..151 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 14:59:54 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 111..689 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:30 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 111..689 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:43:04 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 111..689 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:43 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 111..689 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:57 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 111..689 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:20 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..930 6..934 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:30 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..929 6..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:43:04 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..903 32..934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:43 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..930 6..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:57 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RB 1..929 6..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:44 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12429827..12430193 568..934 99 <- Minus
2L 12430278..12430693 152..567 100 <- Minus
2L 12430747..12430893 1..151 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:44 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12429827..12430193 568..934 99 <- Minus
2L 12430278..12430693 152..567 100 <- Minus
2L 12430747..12430893 1..151 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:44 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12429827..12430193 568..934 99 <- Minus
2L 12430278..12430693 152..567 100 <- Minus
2L 12430747..12430893 1..151 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:04 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430747..12430893 1..151 96   Minus
arm_2L 12429827..12430193 568..934 99 <- Minus
arm_2L 12430278..12430693 152..567 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:24 Download gff for AT11334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12429827..12430193 568..934 99 <- Minus
2L 12430278..12430693 152..567 100 <- Minus
2L 12430747..12430893 1..151 96   Minus

AT11334.pep Sequence

Translation from 110 to 688

> AT11334.pep
MIQYDTVQIKNVSWQPELHTEGTYVCSFPEPPLPEAHLKPGTWHGHLEPY
QRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDY
VMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPL
RIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNFFRY*

AT11334.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15673-PA 193 GF15673-PA 1..193 1..192 907 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10263-PA 192 GG10263-PA 1..192 1..192 1033 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11679-PA 190 GH11679-PA 2..190 4..192 622 62.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PB 192 CG5435-PB 1..192 1..192 1047 100 Plus
CG5435-PA 192 CG5435-PA 1..192 1..192 1047 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17123-PA 190 GI17123-PA 7..190 9..192 635 65.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18773-PA 192 GL18773-PA 1..192 1..192 812 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18880-PA 192 GA18880-PA 1..192 1..192 817 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26229-PA 192 GM26229-PA 1..192 1..192 1040 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22121-PA 192 GD22121-PA 1..192 1..192 1040 99 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14627-PA 192 GK14627-PA 1..192 1..192 803 72.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12294-PA 192 GE12294-PA 1..192 1..192 1042 99 Plus

AT11334.hyp Sequence

Translation from 110 to 688

> AT11334.hyp
MIQYDTVQIKNVSWQPELHTEGTYVCSFPEPPLPEAHLKPGTWHGHLEPY
QRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDY
VMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPL
RIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNFFRY*

AT11334.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PB 192 CG5435-PB 1..192 1..192 1047 100 Plus
CG5435-PA 192 CG5435-PA 1..192 1..192 1047 100 Plus