AT11374.complete Sequence
1378 bp (1378 high quality bases) assembled on 2002-02-27
GenBank Submission: AY084114
> AT11374.complete
ATGGATTTTTTGATTTCTTTACACTTTCATTCTTGCGTTGTCCCTAGTTC
TGTTTCTTACTCCACAAACGCCGTAAACCCTCAAATATTAATCTAATCGT
CAGCTAAAAAGGATTCGGAGCAATCGGAATGTGGTTTCAGTGCAGTAATT
CGTCCTGTCCGGATTAGTTGGCCCATTTGGCCCTTCAGAAACTGCCGGGT
TGCGTTTCTGAAGGGCCAGATTAAAGGCCCCTAAAAGAGGCTTAAAACTC
CCCATAAATCCGGGAGCAGGATAGCTGCAGGGCAACAGCGATGAAGGCAG
TAATGCGAGATGGGTTAAGGTTAGCAGTAGTGGACCTTGAACCCCGACAA
AGCGGAGAGACCGTGAACTATCGGTACCGCGCTGGACACCGTGAACTAGA
CGGAGCAACTGCCCGCAGCAGACGGCGATTACTGTTTCTGAAACACCGTA
CCCCCAAAATATAAACTTGGTGGGACGAACAAACAAACTCTGAGCTAGCC
GAAAACAGTTCGTTACATTTGGCGCCCAAATTAATAGTGCAGATCAAGGA
CCCAGAATGGAGGGGACCAACGTCATCCTGCTCAAGGAGCAGGAGGAGCT
TCAGGTTGATGGGACGGGAAACGCGGTGTTTTGAGGCGAGTAAACGAAAA
ACCGACGACGAGTGGGTAGGGACATCGTGAAAATGGCAGGGATCAAAGCA
GTGGTCGCCAACATCAGGAGCAAGGAAGACACCATAAAGCTGTTATTGAG
GAAAACGAAACACGACAGTCGGCATCAAACCAGTGGCGAAAATTGTGATG
AGGGTGTGCGATATCAGCGGTCGATCGATAGGAAATGGATTTTCAACACG
CGGTCACAATGTGGGGAGCAATCGGCAAAACATGGGAACACCTATATGAA
CAGGAAGTAGCAATGCCGATTTAAGCGGGCAGTGTAGCCAGGGATTTCGA
AGATAAGCGCCACCTAACAACGATTAACGTCGGTATACTATTGATTTCGC
AACACACTAAGCGGCAGGCTTGCATTAACGTTAACGCTATAAAACTTTCC
GTAGTCTATCACTAGAGAGCTATCACATAGTGAATAGAAGGTAGCAGACT
TTTCTTTAGGATTCTGATTCTCTTTTGTGACGCCGATCAGATCCCGTTTC
GTTGAACTAAGGCGATAAGGTGATGAATGCCAATTCTTTTTCGAAACCAG
TTGATACTGCTGATCTTAGGTATTTTTAAACAAAGTCGATTTTTTTTTAT
CATGCTTGTTCCAATTGTCCAAAATGCTTTTCGTATCTGGTTCGAAAAAT
GATCACAGCTGGTTGATTTGCAAAAAAAGAACTGTACAATAGAAAAATTT
TTAAAATTTCAAAAAAAAAAAAAAAAAA
AT11374.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40053-RA | 1471 | CG40053-RA | 111..1471 | 1..1361 | 6805 | 100 | Plus |
CG14438-RB | 10603 | CG14438-RB | 10532..10593 | 1287..1226 | 220 | 90.3 | Minus |
CG14438-RA | 10777 | CG14438-RA | 10706..10767 | 1287..1226 | 220 | 90.3 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 23998839..24000068 | 1360..131 | 6135 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 24000140..24000270 | 131..1 | 655 | 100 | Minus |
chr3RHet | 2517486 | chr3RHet | 1868605..1868697 | 652..743 | 235 | 86 | Plus |
chr3RHet | 2517486 | chr3RHet | 1873719..1873811 | 652..743 | 235 | 86 | Plus |
chrX | 22417052 | chrX | 6662780..6662841 | 1287..1226 | 220 | 90.3 | Minus |
chrU | 10048995 | chrU | 396015..396069 | 387..333 | 215 | 92.7 | Minus |
chr2R | 21145070 | chr2R | 1261607..1261661 | 385..331 | 215 | 92.7 | Minus |
chr3L | 24539361 | chr3L | 24288787..24288843 | 331..387 | 210 | 91.2 | Plus |
chr3LHet | 2555433 | chr3LHet | 1528966..1529056 | 742..653 | 210 | 84.6 | Minus |
chr2RHet | 3288813 | chr2RHet | 759086..759136 | 337..387 | 210 | 94.1 | Plus |
chr2L | 23010047 | chr2L | 22961277..22961333 | 331..387 | 210 | 91.2 | Plus |
chr2R | 21145070 | chr2R | 961352..961406 | 331..385 | 200 | 90.9 | Plus |
chr2R | 21145070 | chr2R | 637473..637529 | 387..331 | 195 | 89.5 | Minus |
chr3RHet | 2517486 | chr3RHet | 1869237..1869292 | 332..387 | 190 | 89.3 | Plus |
chr3RHet | 2517486 | chr3RHet | 1874351..1874406 | 332..387 | 190 | 89.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24009927..24011161 | 1365..131 | 6160 | 99.9 | Minus |
3L | 28110227 | 3L | 24011233..24011363 | 131..1 | 655 | 100 | Minus |
3R | 32079331 | 3R | 3648421..3648513 | 743..652 | 235 | 86 | Minus |
3R | 32079331 | 3R | 3653629..3653721 | 743..652 | 235 | 86 | Minus |
3R | 32079331 | 3R | 3666195..3666287 | 743..652 | 235 | 86 | Minus |
3R | 32079331 | 3R | 3659850..3659942 | 743..652 | 220 | 84.9 | Minus |
X | 23542271 | X | 6770650..6770711 | 1287..1226 | 220 | 90.3 | Minus |
3R | 32079331 | 3R | 1858458..1858512 | 387..333 | 215 | 92.7 | Minus |
2R | 25286936 | 2R | 5374196..5374250 | 385..331 | 215 | 92.7 | Minus |
3L | 28110227 | 3L | 24299887..24299943 | 331..387 | 210 | 91.2 | Plus |
3L | 28110227 | 3L | 26161979..26162069 | 742..653 | 210 | 84.6 | Minus |
2R | 25286936 | 2R | 2015940..2015990 | 337..387 | 210 | 94.1 | Plus |
2L | 23513712 | 2L | 23070042..23070098 | 331..387 | 210 | 91.2 | Plus |
2R | 25286936 | 2R | 5073807..5073861 | 331..385 | 200 | 90.9 | Plus |
2R | 25286936 | 2R | 4749889..4749945 | 387..331 | 195 | 89.5 | Minus |
3R | 32079331 | 3R | 3647826..3647881 | 387..332 | 190 | 89.3 | Minus |
3R | 32079331 | 3R | 3653034..3653089 | 387..332 | 190 | 89.3 | Minus |
3R | 32079331 | 3R | 3659255..3659310 | 387..332 | 190 | 89.3 | Minus |
3R | 32079331 | 3R | 3665600..3665655 | 387..332 | 190 | 89.3 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 24003027..24004261 | 1365..131 | 6160 | 99.9 | Minus |
3L | 28103327 | 3L | 24004333..24004463 | 131..1 | 655 | 100 | Minus |
3R | 31820162 | 3R | 3315067..3315159 | 743..652 | 245 | 86 | Minus |
3R | 31820162 | 3R | 3309859..3309951 | 743..652 | 245 | 86 | Minus |
3R | 31820162 | 3R | 3327633..3327725 | 743..652 | 245 | 86 | Minus |
3L | 28103327 | 3L | 26155079..26155169 | 742..653 | 220 | 84.6 | Minus |
X | 23527363 | X | 6778748..6778809 | 1287..1226 | 220 | 90.3 | Minus |
3R | 31820162 | 3R | 1656036..1656090 | 387..333 | 215 | 92.7 | Minus |
2R | 25260384 | 2R | 5375395..5375449 | 385..331 | 215 | 92.7 | Minus |
3L | 28103327 | 3L | 24292987..24293043 | 331..387 | 210 | 91.2 | Plus |
2R | 25260384 | 2R | 2015940..2015990 | 337..387 | 210 | 94.1 | Plus |
2L | 23513712 | 2L | 23070042..23070098 | 331..387 | 210 | 91.2 | Plus |
2R | 25260384 | 2R | 5075006..5075060 | 331..385 | 200 | 90.9 | Plus |
2R | 25260384 | 2R | 4751088..4751144 | 387..331 | 195 | 89.4 | Minus |
3R | 31820162 | 3R | 3320693..3320748 | 387..332 | 190 | 89.2 | Minus |
3R | 31820162 | 3R | 3314472..3314527 | 387..332 | 190 | 89.2 | Minus |
3R | 31820162 | 3R | 3327038..3327093 | 387..332 | 190 | 89.2 | Minus |
3R | 31820162 | 3R | 3309264..3309319 | 387..332 | 190 | 89.2 | Minus |
2L | 23513712 | 2L | 23071102..23071188 | 671..756 | 185 | 82.7 | Plus |
Blast to na_te.dros performed 2019-03-15 17:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3..117 | 235..345 | 196 | 69.5 | Plus |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4654..4768 | 235..345 | 196 | 69.5 | Plus |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 874..937 | 65..128 | 185 | 76.6 | Plus |
AT11374.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:40:47 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 23998839..24000067 | 132..1360 | 99 | <- | Minus |
chr3L | 24000140..24000270 | 1..131 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:00:02 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40053-RA | 1..228 | 683..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:33:14 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40053-RA | 1..228 | 683..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:50 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40053-RA | 1..228 | 683..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:59:11 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40053-RA | 1..1360 | 1..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:33:14 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40053-RA | 1..1360 | 1..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 02:43:09 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:51 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40053-RA | 1..1360 | 1..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 21:44:01 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:47 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24009932..24011160 | 132..1360 | 100 | <- | Minus |
3L | 24011233..24011363 | 1..131 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:47 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24009932..24011160 | 132..1360 | 100 | <- | Minus |
3L | 24011233..24011363 | 1..131 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:40:47 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24009932..24011160 | 132..1360 | 100 | <- | Minus |
3L | 24011233..24011363 | 1..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:09 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24003032..24004260 | 132..1360 | 100 | <- | Minus |
arm_3L | 24004333..24004463 | 1..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:43:09 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24003032..24004260 | 132..1360 | 100 | <- | Minus |
arm_3L | 24004333..24004463 | 1..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:39:39 Download gff for
AT11374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24003032..24004260 | 132..1360 | 100 | <- | Minus |
3L | 24004333..24004463 | 1..131 | 100 | | Minus |
AT11374.hyp Sequence
Translation from 682 to 909
> AT11374.hyp
MAGIKAVVANIRSKEDTIKLLLRKTKHDSRHQTSGENCDEGVRYQRSIDR
KWIFNTRSQCGEQSAKHGNTYMNRK*
Sequence AT11374.hyp has no blast hits.
AT11374.pep Sequence
Translation from 682 to 909
> AT11374.pep
MAGIKAVVANIRSKEDTIKLLLRKTKHDSRHQTSGENCDEGVRYQRSIDR
KWIFNTRSQCGEQSAKHGNTYMNRK*
Sequence AT11374.pep has no blast hits.