Clone AT11401 Report

Search the DGRC for AT11401

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:114
Well:1
Vector:pOTB7
Associated Gene/TranscriptCG12902-RA
Protein status:AT11401.pep: gold
Preliminary Size:970
Sequenced Size:914

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12902 2002-01-01 Sim4 clustering to Release 2
CG12902 2002-04-26 Blastp of sequenced clone
CG12902 2003-01-01 Sim4 clustering to Release 3
CG12902 2008-04-29 Release 5.5 accounting
CG12902 2008-08-15 Release 5.9 accounting
CG12902 2008-12-18 5.12 accounting

Clone Sequence Records

AT11401.complete Sequence

914 bp (914 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113233

> AT11401.complete
GGGCTTTGAAACTTCGTGCCGACACTTTTCAGTTATCCGTTTTGGCCACA
GCAGCAAACTTCCATGAATCTGGAAAAATTCAAAATTGTTGAAATTTAAA
AAATCATTTGTTGTTCTGAGGACACCGACGTCTTCCTTTGGTTATCATCT
AGCAACACCATGCATTTGATGTGCGAGCGATTGTCTGCAGTTTTTGCGGG
CGTCCTAGTGGGTTTGTGGTACGGTAAGACCTTTTCCGAGGACGAAAAGC
CCAAGGAGAAGGGCAAGGACAAGAAGAAGTAGACCGACCGATCACTCGCA
AGACTGGCAGAAATCAATACGATCTTCTTAGACAGCGATTTCAGTTTTGG
TCTAAATTGTGGCAAATCCTGTCGAGCTTTTGCAGCCATGCCCTGTTGTA
AGCGTACCGAGGTCCGCAGGGTGTGCCGGCCGATGCCGTCGCTCCTTGCC
AGGCTCAACTGTACGCCGTGCAACCGCGTCCTGTTCTTCGTCATCGGCGT
GGGACTGGGCGTGCTCTTTGTGCGCAACAAGGACGACAAGTCGGGCGGCA
AAAAGAAGGACGAAGGCAAGGCCAAGAAGTAGGACTGACCGATCTGCCAT
GCCCGGCGGTAATATCAATCATCCAAGCCTGGCACTAGCTAATTGAACCT
GGACTCATCATCACCCATGAAGTTACCCAACCGCTTGCAGCGTTAGCCAG
GGAAGACAAAATGCCATTCGATAAGTTTGTCCGCCGATGAATGGAATGGA
GAGGAAATTTCTCAGTCGATAAATTTATCTAAAGAGCAATTTGTCAATCG
AACAATTAACTGCCACATTTAATACAGGTTTATTCGATTGATCTATTCTC
TATTATATATTCCTCTGTTGAAAATGCTATAAAATTGGTGCTGTACAAAA
AAAAAAAAAAAAAA

AT11401.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-RB 1058 CG12902-RB 158..1055 1..898 4415 99.4 Plus
CG12902-RA 1209 CG12902-RA 638..1206 330..898 2785 99.2 Plus
nc_5751.a 503 nc_5751.a 1..503 49..555 2390 98.4 Plus
CG12902-RA 1209 CG12902-RA 158..488 1..331 1640 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6242146..6242712 896..330 2790 99.5 Minus
chr2R 21145070 chr2R 6242923..6243253 331..1 1625 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10354722..10355290 898..330 2785 99.3 Minus
2R 25286936 2R 10355501..10355831 331..1 1640 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10355921..10356489 898..330 2785 99.2 Minus
2R 25260384 2R 10356700..10357030 331..1 1640 99.6 Minus
Blast to na_te.dros performed on 2019-03-15 23:21:17 has no hits.

AT11401.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:22:37 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6242146..6242710 332..896 99 <- Minus
chr2R 6242923..6243253 1..331 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:00:06 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..195 388..582 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:09 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..195 388..582 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:56 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RA 1..195 388..582 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:40 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..195 388..582 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:12 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RA 1..195 388..582 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:30 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..896 1..896 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:09 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..896 1..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:56 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG43397-RB 1..896 1..896 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:40 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..896 1..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:12 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
CG12902-RB 1..896 1..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:37 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10354724..10355288 332..896 99 <- Minus
2R 10355501..10355831 1..331 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:37 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10354724..10355288 332..896 99 <- Minus
2R 10355501..10355831 1..331 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:37 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10354724..10355288 332..896 99 <- Minus
2R 10355501..10355831 1..331 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:56 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6242229..6242793 332..896 99 <- Minus
arm_2R 6243006..6243336 1..331 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:11 Download gff for AT11401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10355923..10356487 332..896 99 <- Minus
2R 10356700..10357030 1..331 99   Minus

AT11401.pep Sequence

Translation from 387 to 581

> AT11401.pep
MPCCKRTEVRRVCRPMPSLLARLNCTPCNRVLFFVIGVGLGVLFVRNKDD
KSGGKKKDEGKAKK*

AT11401.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19792-PA 67 GF19792-PA 1..49 1..49 217 81.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25218-PA 63 GG25218-PA 1..63 1..64 298 95.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-PC 64 CG12902-PC 1..64 1..64 345 100 Plus
CG12902-PB 64 CG12902-PB 1..64 1..64 345 100 Plus
CG12902-PA 64 CG12902-PA 1..64 1..64 345 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11602-PA 59 GL11602-PA 1..57 1..57 158 54.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24786-PA 59 GA24786-PA 1..57 1..57 158 54.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20537-PA 64 GM20537-PA 1..64 1..64 321 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25994-PA 64 GD25994-PA 1..64 1..64 321 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20152-PA 64 GJ20152-PA 3..64 8..61 184 56.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18889-PA 66 GK18889-PA 1..51 1..51 220 80.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21633-PA 64 GE21633-PA 1..64 1..64 314 98.4 Plus

AT11401.hyp Sequence

Translation from 387 to 581

> AT11401.hyp
MPCCKRTEVRRVCRPMPSLLARLNCTPCNRVLFFVIGVGLGVLFVRNKDD
KSGGKKKDEGKAKK*

AT11401.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12902-PC 64 CG12902-PC 1..64 1..64 345 100 Plus
CG12902-PB 64 CG12902-PB 1..64 1..64 345 100 Plus
CG12902-PA 64 CG12902-PA 1..64 1..64 345 100 Plus