AT11401.complete Sequence
914 bp (914 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113233
> AT11401.complete
GGGCTTTGAAACTTCGTGCCGACACTTTTCAGTTATCCGTTTTGGCCACA
GCAGCAAACTTCCATGAATCTGGAAAAATTCAAAATTGTTGAAATTTAAA
AAATCATTTGTTGTTCTGAGGACACCGACGTCTTCCTTTGGTTATCATCT
AGCAACACCATGCATTTGATGTGCGAGCGATTGTCTGCAGTTTTTGCGGG
CGTCCTAGTGGGTTTGTGGTACGGTAAGACCTTTTCCGAGGACGAAAAGC
CCAAGGAGAAGGGCAAGGACAAGAAGAAGTAGACCGACCGATCACTCGCA
AGACTGGCAGAAATCAATACGATCTTCTTAGACAGCGATTTCAGTTTTGG
TCTAAATTGTGGCAAATCCTGTCGAGCTTTTGCAGCCATGCCCTGTTGTA
AGCGTACCGAGGTCCGCAGGGTGTGCCGGCCGATGCCGTCGCTCCTTGCC
AGGCTCAACTGTACGCCGTGCAACCGCGTCCTGTTCTTCGTCATCGGCGT
GGGACTGGGCGTGCTCTTTGTGCGCAACAAGGACGACAAGTCGGGCGGCA
AAAAGAAGGACGAAGGCAAGGCCAAGAAGTAGGACTGACCGATCTGCCAT
GCCCGGCGGTAATATCAATCATCCAAGCCTGGCACTAGCTAATTGAACCT
GGACTCATCATCACCCATGAAGTTACCCAACCGCTTGCAGCGTTAGCCAG
GGAAGACAAAATGCCATTCGATAAGTTTGTCCGCCGATGAATGGAATGGA
GAGGAAATTTCTCAGTCGATAAATTTATCTAAAGAGCAATTTGTCAATCG
AACAATTAACTGCCACATTTAATACAGGTTTATTCGATTGATCTATTCTC
TATTATATATTCCTCTGTTGAAAATGCTATAAAATTGGTGCTGTACAAAA
AAAAAAAAAAAAAA
AT11401.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-RB | 1058 | CG12902-RB | 158..1055 | 1..898 | 4415 | 99.4 | Plus |
CG12902-RA | 1209 | CG12902-RA | 638..1206 | 330..898 | 2785 | 99.2 | Plus |
nc_5751.a | 503 | nc_5751.a | 1..503 | 49..555 | 2390 | 98.4 | Plus |
CG12902-RA | 1209 | CG12902-RA | 158..488 | 1..331 | 1640 | 99.6 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 6242146..6242712 | 896..330 | 2790 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 6242923..6243253 | 331..1 | 1625 | 99.4 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10354722..10355290 | 898..330 | 2785 | 99.3 | Minus |
2R | 25286936 | 2R | 10355501..10355831 | 331..1 | 1640 | 99.7 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 10355921..10356489 | 898..330 | 2785 | 99.2 | Minus |
2R | 25260384 | 2R | 10356700..10357030 | 331..1 | 1640 | 99.6 | Minus |
Blast to na_te.dros performed on 2019-03-15 23:21:17 has no hits.
AT11401.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:22:37 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 6242146..6242710 | 332..896 | 99 | <- | Minus |
chr2R | 6242923..6243253 | 1..331 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:00:06 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..195 | 388..582 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:09 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..195 | 388..582 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:56 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RA | 1..195 | 388..582 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:40 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..195 | 388..582 | 98 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:12 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RA | 1..195 | 388..582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:31:30 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..896 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:09 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..896 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:56 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43397-RB | 1..896 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:40 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..896 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:12 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12902-RB | 1..896 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:37 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10354724..10355288 | 332..896 | 99 | <- | Minus |
2R | 10355501..10355831 | 1..331 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:37 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10354724..10355288 | 332..896 | 99 | <- | Minus |
2R | 10355501..10355831 | 1..331 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:22:37 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10354724..10355288 | 332..896 | 99 | <- | Minus |
2R | 10355501..10355831 | 1..331 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:56 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6242229..6242793 | 332..896 | 99 | <- | Minus |
arm_2R | 6243006..6243336 | 1..331 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:11 Download gff for
AT11401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10355923..10356487 | 332..896 | 99 | <- | Minus |
2R | 10356700..10357030 | 1..331 | 99 | | Minus |
AT11401.pep Sequence
Translation from 387 to 581
> AT11401.pep
MPCCKRTEVRRVCRPMPSLLARLNCTPCNRVLFFVIGVGLGVLFVRNKDD
KSGGKKKDEGKAKK*
AT11401.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19792-PA | 67 | GF19792-PA | 1..49 | 1..49 | 217 | 81.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG25218-PA | 63 | GG25218-PA | 1..63 | 1..64 | 298 | 95.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-PC | 64 | CG12902-PC | 1..64 | 1..64 | 345 | 100 | Plus |
CG12902-PB | 64 | CG12902-PB | 1..64 | 1..64 | 345 | 100 | Plus |
CG12902-PA | 64 | CG12902-PA | 1..64 | 1..64 | 345 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11602-PA | 59 | GL11602-PA | 1..57 | 1..57 | 158 | 54.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA24786-PA | 59 | GA24786-PA | 1..57 | 1..57 | 158 | 54.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM20537-PA | 64 | GM20537-PA | 1..64 | 1..64 | 321 | 100 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25994-PA | 64 | GD25994-PA | 1..64 | 1..64 | 321 | 100 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ20152-PA | 64 | GJ20152-PA | 3..64 | 8..61 | 184 | 56.5 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK18889-PA | 66 | GK18889-PA | 1..51 | 1..51 | 220 | 80.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE21633-PA | 64 | GE21633-PA | 1..64 | 1..64 | 314 | 98.4 | Plus |
AT11401.hyp Sequence
Translation from 387 to 581
> AT11401.hyp
MPCCKRTEVRRVCRPMPSLLARLNCTPCNRVLFFVIGVGLGVLFVRNKDD
KSGGKKKDEGKAKK*
AT11401.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12902-PC | 64 | CG12902-PC | 1..64 | 1..64 | 345 | 100 | Plus |
CG12902-PB | 64 | CG12902-PB | 1..64 | 1..64 | 345 | 100 | Plus |
CG12902-PA | 64 | CG12902-PA | 1..64 | 1..64 | 345 | 100 | Plus |