Clone AT11423 Report

Search the DGRC for AT11423

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:114
Well:23
Vector:pOTB7
Associated Gene/TranscriptCG14834-RA
Protein status:AT11423.pep: gold
Preliminary Size:1224
Sequenced Size:1445

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14834 2002-01-01 Sim4 clustering to Release 2
CG14834 2002-04-21 Blastp of sequenced clone
CG14834 2003-01-01 Sim4 clustering to Release 3
CG14834 2008-04-29 Release 5.5 accounting
CG14834 2008-08-15 Release 5.9 accounting
CG14834 2008-12-18 5.12 accounting

Clone Sequence Records

AT11423.complete Sequence

1445 bp (1445 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113234

> AT11423.complete
TACGATTTCACCTGGTCAGCGTTATAAAATCGGTTGCGCATCGCAATTGG
CCAGACAGTTTGAACTGGAGCACCCACAATGATGACGGAAAAGATACGGA
AGAGCAGCCTCAGTGGCTATACGGTGATACTTCTACTGGCTGCTATTCAG
TTCCAAGCAAGTGTAGTGTCCAGCACGACAACCAAACCGCCATCGACATT
GGCCACATCCACGAAAGCTAGTCGCAATGTGAATCCCCTGACGGAGTCGA
AGCTCGAGAAGAATTGCAAGGCGCTGTGTGAGCATTGCGGCTGTTTGGGC
TTCTACTGCGGCGAGGAGTGCCTGTGCGAGTGTAATGACGACCAATCCGA
TACTGAGTGCATTCGCACCATGCAGATGAATGCCAAGACGTTGAATCTAC
CATTCGAAATCGTCATCCAGGGACCGAGCAGCAATCGGTTTGTGCGCAAC
GCCCAGCAGTTCGAGCAGAAACGAGATCTGGTGGCCAGGAGCGCCAGCAC
TTCAATGCAGTCGCCTCGAAATCGTCGCTCAAACATAACCATCTACAAGC
CCTCCACAAAGTTGGTCATTCAACGTACGGCCAATGGCTTAGAAACGCCA
TCCAAGGCTTCGGAGCAGATAAGGCACAAGAGGTCCGTCGATCACCTGGA
GTGGTTCAATGACTTTGCCAGTTCCTTGGTGCGTCCCTCGCCACTGGGCA
CTAGAGCCCAGAAGCAGCAGCGTGCATCAGCCAAGCCATCGGCATTCAAG
CGTCAGGCTGAGCTGGAGGAGCCGGCTCGTCGGGAACCATGGTTCCTGGA
GCAGTCAGCTTCGCGACTGACTCGCCCCGCTCCACTTAAGAAGGATGCAC
TCTCGCGGAAGAACAAGAAGAGTCCTTTGTTCCGAAAGAGCGCCAAGAGC
AAGGCGTCCAAGGAGCAGTCGCGCAAGCAACCGGAGCGAGAGATTCGGCC
ACTCCGCGATGCCTTGCAGGTGGTGGAGCGGATACCCAAGGTGCTTCAAG
ATACGGTCAGTCATCTGTCCTCCGATCCACGCACTGGGGATGTCTTTAGC
CTGAATATTAGAAACGAGGATGTGCCGCAGAAAAAGGATCGCCAGCCTGA
GGATCGTGTGCCACGCAGGCCTAGCGCCACCTTCCGTGGTTTCCGGCGCA
ATGAGATCATCCCCGAAGCCGTCACCCTGGCTGCCCCAATGGACCTTGCC
CCACGAGCTCCACTTCCCGGCCAGCGTCCAGGTGGACTCCTGCTGCCCTG
GCTGAGGCAGCGGCGACTGATGCGTTTGCAGCAGGCACAGGGAAATCTGT
AGACCCAACATACCCAATTTACTTTCACTTTTATTATTATAATCATTTGT
TGTATATTTATAAGGCATTTTGGTCTCTCAAAAATAAATATAAATTTGCA
CATTATAGTGTTCTGCAGTAGCAGCGAAAAAAAAAAAAAAAAAAA

AT11423.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14834-RA 1426 CG14834-RA 1..1426 1..1426 7085 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7337830..7339255 1426..1 7130 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:45:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7345696..7347123 1428..1 7095 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7338796..7340223 1428..1 7095 99.7 Minus
Blast to na_te.dros performed 2019-03-16 04:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 6570..6623 1312..1363 130 74.1 Plus

AT11423.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:45:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7337830..7339255 1..1426 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:00:09 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1224 79..1302 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:39 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1224 79..1302 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:41:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1224 79..1302 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:59 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1224 79..1302 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:50:05 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1224 79..1302 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:03 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:39 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:59 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:50:05 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
CG14834-RA 1..1426 1..1426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:45:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7345698..7347123 1..1426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:45:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7345698..7347123 1..1426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:45:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7345698..7347123 1..1426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:06 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7338798..7340223 1..1426 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:12 Download gff for AT11423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7338798..7340223 1..1426 99   Minus

AT11423.pep Sequence

Translation from 78 to 1301

> AT11423.pep
MMTEKIRKSSLSGYTVILLLAAIQFQASVVSSTTTKPPSTLATSTKASRN
VNPLTESKLEKNCKALCEHCGCLGFYCGEECLCECNDDQSDTECIRTMQM
NAKTLNLPFEIVIQGPSSNRFVRNAQQFEQKRDLVARSASTSMQSPRNRR
SNITIYKPSTKLVIQRTANGLETPSKASEQIRHKRSVDHLEWFNDFASSL
VRPSPLGTRAQKQQRASAKPSAFKRQAELEEPARREPWFLEQSASRLTRP
APLKKDALSRKNKKSPLFRKSAKSKASKEQSRKQPEREIRPLRDALQVVE
RIPKVLQDTVSHLSSDPRTGDVFSLNIRNEDVPQKKDRQPEDRVPRRPSA
TFRGFRRNEIIPEAVTLAAPMDLAPRAPLPGQRPGGLLLPWLRQRRLMRL
QQAQGNL*

AT11423.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25122-PA 410 GF25122-PA 1..395 2..391 1127 62.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14975-PA 407 GG14975-PA 1..407 1..407 1949 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16091-PA 407 GH16091-PA 11..395 12..391 926 56.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14834-PA 407 CG14834-PA 1..407 1..407 2083 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12355-PA 411 GI12355-PA 49..360 49..358 893 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21110-PA 418 GL21110-PA 1..417 1..406 1237 62.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13282-PA 418 GA13282-PA 1..417 1..406 1235 61.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13770-PA 92 GM13770-PA 1..84 1..84 376 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13068-PA 407 GD13068-PA 1..407 1..407 1997 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12247-PA 411 GJ12247-PA 19..398 15..391 933 54.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16667-PA 392 GK16667-PA 1..320 1..335 895 56.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20422-PA 407 GE20422-PA 1..407 1..407 1842 87.8 Plus

AT11423.hyp Sequence

Translation from 78 to 1301

> AT11423.hyp
MMTEKIRKSSLSGYTVILLLAAIQFQASVVSSTTTKPPSTLATSTKASRN
VNPLTESKLEKNCKALCEHCGCLGFYCGEECLCECNDDQSDTECIRTMQM
NAKTLNLPFEIVIQGPSSNRFVRNAQQFEQKRDLVARSASTSMQSPRNRR
SNITIYKPSTKLVIQRTANGLETPSKASEQIRHKRSVDHLEWFNDFASSL
VRPSPLGTRAQKQQRASAKPSAFKRQAELEEPARREPWFLEQSASRLTRP
APLKKDALSRKNKKSPLFRKSAKSKASKEQSRKQPEREIRPLRDALQVVE
RIPKVLQDTVSHLSSDPRTGDVFSLNIRNEDVPQKKDRQPEDRVPRRPSA
TFRGFRRNEIIPEAVTLAAPMDLAPRAPLPGQRPGGLLLPWLRQRRLMRL
QQAQGNL*

AT11423.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14834-PA 407 CG14834-PA 1..407 1..407 2083 100 Plus