BDGP Sequence Production Resources |
Search the DGRC for AT11641
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 116 |
Well: | 41 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG5561-RA |
Protein status: | AT11641.pep: gold |
Preliminary Size: | 918 |
Sequenced Size: | 1109 |
Gene | Date | Evidence |
---|---|---|
CG5561 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5561 | 2002-05-21 | Blastp of sequenced clone |
CG5561 | 2008-04-29 | Release 5.5 accounting |
CG5561 | 2008-08-15 | Release 5.9 accounting |
CG5561 | 2008-12-18 | 5.12 accounting |
1109 bp (1109 high quality bases) assembled on 2002-05-21
GenBank Submission: AY118278
> AT11641.complete TTCTAGTGTAAATTTTCATACTTTTAGACCTTGATACAGATAATGTTGAT ATAAATTCGCTGAAAATTTCTCCAGTCCTAGAATTCTTCTGGTAGAAAAG GAAGATGTGCACTTTTGGCTGCAGGACATGCAAATCTCAACCAGATTGTG AGGGCTGTTCCCCAAAGTGCTGCAGTCCTTGTATCAGCTACTGCATTTTC GATCTAGAAAGTGCTGTCTTTGATACTCGCCACGTCTACCGGAAGGCTCT CAAGGAACTGGTCCGTTGTTACGATAAGAGGATACCAGACATTTTACATG TCCAAAGTGGACCTATGACGATATCAGAGATGTCTGAACTTTTTTGCCGG AAGCTCGATATTCCGATGAGTTGGGAATCGTTTCGGTATGAACTTAACGA GCGAACCTCCCATTTGATTGCAAATCCCCCGTTTATGGATGGGATTGAGC GGCTTGTTCCGCACCTGCGCAATAGCTGCATGGAATTGGGCTTGATCACC TCCAGCAACGAGGCCAACTACTGCTCGAAGATCCGCGGCCGGGAGGACTT CTTTGAGAACTTCTCCACCGTGGTCTGTGCGGATGATCCGGAGTTGCGGG CACCCAAACCCGAGCCCGACGTCTACCTGATTGCCATGTCGAGGCTAGGG GATGCTGGACCTGATTGCACCCTGGTTTTCGATGGCACTCCCAAAGGAGT TCAGGCGGCGAGCGATGCTCGACTGCCCGTCATAATGTTGGCCGAAAAGG ACCTTCCCTGCTGTTGGTCCGAATTGGCCGCCTTGCGCTTCGAGTACCTG GACGACTTCGAGCCGGAGATGTATAATTTGCCCCCATTTACGGACCCTGC GCCCAAGAGGCGATCGAGTCGTCGGCGCACGAGATACAGTCAAAGATTGA CCGTAATCCGGGCAAGAGCGGCCGAAGCAGCTGCCGCGGAGGAGGCGGAG GCAGAGGAGGAGGAACCCGCCGAACCACCACCACCAGCCGCCCTACCATC CATTTTAAATTTAAGAGAATAAGTCACGTTTTAGAAATGATTTATAAGAT ATCAAATATTTTATAAGTTAATAAAAATATGTCGTTCTTGCAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 1352829..1353698 | 1091..222 | 4290 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 1353747..1353968 | 222..1 | 1080 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 1351903..1352178 | 816..541 | 435 | 77.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1352967..1353839 | 1094..222 | 4365 | 100 | Minus |
2L | 23513712 | 2L | 1353888..1354109 | 222..1 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 1352048..1352323 | 816..541 | 435 | 77.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 1352967..1353839 | 1094..222 | 4365 | 100 | Minus |
2L | 23513712 | 2L | 1353888..1354109 | 222..1 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 1352048..1352323 | 816..541 | 435 | 77.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1326..1410 | 999..1088 | 150 | 66.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 1352829..1353697 | 223..1091 | 99 | <- | Minus |
chr2L | 1353747..1353968 | 1..222 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..918 | 105..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..918 | 105..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..918 | 105..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..918 | 105..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..918 | 105..1022 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..1091 | 1..1091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..1091 | 1..1091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..1091 | 1..1091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..1091 | 1..1091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5561-RA | 1..1091 | 1..1091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1352970..1353838 | 223..1091 | 100 | <- | Minus |
2L | 1353888..1354109 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1352970..1353838 | 223..1091 | 100 | <- | Minus |
2L | 1353888..1354109 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1352970..1353838 | 223..1091 | 100 | <- | Minus |
2L | 1353888..1354109 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 1352970..1353838 | 223..1091 | 100 | <- | Minus |
arm_2L | 1353888..1354109 | 1..222 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 1352970..1353838 | 223..1091 | 100 | <- | Minus |
2L | 1353888..1354109 | 1..222 | 100 | Minus |
Translation from 104 to 1021
> AT11641.pep MCTFGCRTCKSQPDCEGCSPKCCSPCISYCIFDLESAVFDTRHVYRKALK ELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNER TSHLIANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFF ENFSTVVCADDPELRAPKPEPDVYLIAMSRLGDAGPDCTLVFDGTPKGVQ AASDARLPVIMLAEKDLPCCWSELAALRFEYLDDFEPEMYNLPPFTDPAP KRRSSRRRTRYSQRLTVIRARAAEAAAAEEAEAEEEEPAEPPPPAALPSI LNLRE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14727-PA | 298 | GF14727-PA | 1..254 | 1..252 | 909 | 65.7 | Plus |
Dana\GF14724-PA | 240 | GF14724-PA | 5..231 | 21..245 | 237 | 27.6 | Plus |
Dana\GF24022-PA | 304 | GF24022-PA | 95..304 | 40..247 | 232 | 28.3 | Plus |
Dana\GF19687-PA | 241 | GF19687-PA | 11..239 | 5..243 | 209 | 24.6 | Plus |
Dana\GF14725-PA | 240 | GF14725-PA | 5..231 | 21..245 | 198 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24599-PA | 241 | GG24599-PA | 1..229 | 1..229 | 1144 | 93 | Plus |
Dere\GG24600-PA | 297 | GG24600-PA | 1..246 | 1..246 | 950 | 69.1 | Plus |
Dere\GG24373-PA | 304 | GG24373-PA | 95..304 | 40..247 | 224 | 28.4 | Plus |
Dere\GG24597-PA | 240 | GG24597-PA | 9..240 | 16..245 | 215 | 25 | Plus |
Dere\GG24596-PA | 153 | GG24596-PA | 1..142 | 105..243 | 178 | 31 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11411-PA | 303 | GH11411-PA | 32..245 | 28..242 | 591 | 52.3 | Plus |
Dgri\GH10332-PA | 238 | GH10332-PA | 10..231 | 27..247 | 316 | 30.2 | Plus |
Dgri\GH11658-PA | 304 | GH11658-PA | 95..304 | 40..247 | 229 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5561-PA | 305 | CG5561-PA | 1..305 | 1..305 | 1638 | 100 | Plus |
CG5556-PB | 299 | CG5556-PB | 1..297 | 1..290 | 1007 | 63.3 | Plus |
CG5556-PA | 299 | CG5556-PA | 1..297 | 1..290 | 1007 | 63.3 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..231 | 27..247 | 286 | 30.9 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..231 | 27..247 | 259 | 27.4 | Plus |
CG5565-PA | 240 | CG5565-PA | 5..231 | 21..245 | 253 | 28.5 | Plus |
CG31924-PB | 236 | CG31924-PB | 5..235 | 16..244 | 205 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18114-PA | 299 | GI18114-PA | 39..260 | 28..251 | 628 | 54.2 | Plus |
Dmoj\GI17090-PA | 240 | GI17090-PA | 8..231 | 23..245 | 292 | 29.5 | Plus |
Dmoj\GI17960-PA | 304 | GI17960-PA | 95..304 | 40..247 | 236 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14891-PA | 287 | GL14891-PA | 10..239 | 17..246 | 777 | 61.7 | Plus |
Dper\GL14859-PA | 240 | GL14859-PA | 4..231 | 21..245 | 271 | 28.1 | Plus |
Dper\GL15658-PA | 240 | GL15658-PA | 4..231 | 21..245 | 270 | 28.1 | Plus |
Dper\GL15404-PA | 304 | GL15404-PA | 95..304 | 40..247 | 246 | 29.5 | Plus |
Dper\GL15659-PA | 236 | GL15659-PA | 8..236 | 19..245 | 238 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25376-PA | 394 | GA25376-PA | 10..239 | 17..246 | 786 | 62.2 | Plus |
Dpse\GA25358-PA | 240 | GA25358-PA | 4..231 | 21..245 | 271 | 28.1 | Plus |
Dpse\GA18974-PA | 240 | GA18974-PA | 4..231 | 21..245 | 271 | 28.1 | Plus |
Dpse\GA25364-PA | 236 | GA25364-PA | 8..236 | 19..245 | 246 | 28.4 | Plus |
Dpse\GA13732-PA | 304 | GA13732-PA | 95..304 | 40..247 | 246 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16615-PA | 304 | GM16615-PA | 1..304 | 1..305 | 1545 | 97 | Plus |
Dsec\GM16616-PA | 299 | GM16616-PA | 1..275 | 1..275 | 952 | 62.9 | Plus |
Dsec\GM16613-PA | 240 | GM16613-PA | 3..231 | 19..245 | 259 | 28.7 | Plus |
Dsec\GM18089-PA | 304 | GM18089-PA | 95..304 | 40..247 | 205 | 27.1 | Plus |
Dsec\GM16614-PA | 216 | GM16614-PA | 27..216 | 43..245 | 183 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22914-PA | 274 | GD22914-PA | 1..240 | 1..257 | 1031 | 74.3 | Plus |
Dsim\GD22912-PA | 240 | GD22912-PA | 3..231 | 19..245 | 261 | 28.7 | Plus |
Dsim\GD22707-PA | 304 | GD22707-PA | 95..304 | 40..247 | 212 | 27.6 | Plus |
Dsim\GD22913-PA | 216 | GD22913-PA | 27..216 | 43..245 | 187 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17047-PA | 308 | GJ17047-PA | 39..252 | 28..242 | 645 | 57.4 | Plus |
Dvir\GJ10810-PA | 240 | GJ10810-PA | 8..233 | 23..247 | 284 | 28.3 | Plus |
Dvir\GJ17733-PA | 304 | GJ17733-PA | 95..304 | 40..247 | 235 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14950-PA | 294 | GK14950-PA | 1..266 | 1..263 | 708 | 49.8 | Plus |
Dwil\GK13331-PA | 238 | GK13331-PA | 16..238 | 27..247 | 265 | 28.3 | Plus |
Dwil\GK15189-PA | 240 | GK15189-PA | 10..231 | 27..245 | 236 | 26.1 | Plus |
Dwil\GK19038-PA | 243 | GK19038-PA | 12..240 | 19..245 | 227 | 25.8 | Plus |
Dwil\GK23925-PA | 304 | GK23925-PA | 95..304 | 40..247 | 212 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15655-PA | 304 | GE15655-PA | 1..304 | 1..305 | 1308 | 90.5 | Plus |
Dyak\GE15666-PA | 301 | GE15666-PA | 1..278 | 1..271 | 946 | 61.5 | Plus |
Dyak\GE15633-PA | 240 | GE15633-PA | 3..231 | 20..245 | 249 | 27.5 | Plus |
Dyak\GE14717-PA | 304 | GE14717-PA | 95..304 | 40..247 | 225 | 28.9 | Plus |
Dyak\GE15644-PA | 240 | GE15644-PA | 20..240 | 27..245 | 220 | 25.8 | Plus |
Translation from 104 to 1021
> AT11641.hyp MCTFGCRTCKSQPDCEGCSPKCCSPCISYCIFDLESAVFDTRHVYRKALK ELVRCYDKRIPDILHVQSGPMTISEMSELFCRKLDIPMSWESFRYELNER TSHLIANPPFMDGIERLVPHLRNSCMELGLITSSNEANYCSKIRGREDFF ENFSTVVCADDPELRAPKPEPDVYLIAMSRLGDAGPDCTLVFDGTPKGVQ AASDARLPVIMLAEKDLPCCWSELAALRFEYLDDFEPEMYNLPPFTDPAP KRRSSRRRTRYSQRLTVIRARAAEAAAAEEAEAEEEEPAEPPPPAALPSI LNLRE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5561-PA | 305 | CG5561-PA | 1..305 | 1..305 | 1638 | 100 | Plus |
CG5556-PB | 299 | CG5556-PB | 1..297 | 1..290 | 1007 | 63.3 | Plus |
CG5556-PA | 299 | CG5556-PA | 1..297 | 1..290 | 1007 | 63.3 | Plus |
Gs1l-PA | 231 | CG15441-PA | 9..231 | 27..247 | 286 | 30.9 | Plus |
Gs1l-PB | 231 | CG15441-PB | 9..231 | 27..247 | 259 | 27.4 | Plus |