Clone AT11889 Report

Search the DGRC for AT11889

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:118
Well:89
Vector:pOTB7
Associated Gene/TranscriptCG46025-RA
Protein status:AT11889.pep: gold
Preliminary Size:618
Sequenced Size:1867

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14538 2002-01-01 Sim4 clustering to Release 2
CG7196 2002-04-04 Blastp of sequenced clone
CG7196 2003-01-01 Sim4 clustering to Release 3
CG7196 2008-04-29 Release 5.5 accounting
CG7196 2008-08-15 Release 5.9 accounting
CG7196 2008-12-18 5.12 accounting

Clone Sequence Records

AT11889.complete Sequence

1867 bp (1867 high quality bases) assembled on 2002-04-04

GenBank Submission: AY094997

> AT11889.complete
AAAATCTTCAGTCAGTATACACAAATAACTAATTCCGTTTCAAGCAAGCA
TACTTTATATTTTCGAGTACTATACTTGATGTAAAGAACTCCCACTGAGA
AGCAGAATCAGGCTTGGTTCTAGAAAGGATTCGGAGGCTTTAAAATGGCA
CGCCTGGTGTTTACGGAGAAAGATCACAATGCATACGATCCCAAAAAGTA
TAAGGTGGTGCACAAGAACCACTGGCGACAGGTCAGCCTGCTGCTGCAGC
CTTCCAACAAGAAGTGGTGGGAGGATCCCGATGTCATTGTTGCTTTCAAT
TTACCGCGCATTAGCGCCCGCCTGGAGCGTCTGATGGGCACCAATGTGGT
CAAGCTAACGGACCGGAGCTACATGAAGGAGCTGCGGGAACGAATTGACG
AGGATTACCGCAAACAGCTGCTGTCCCGCATTCGCGCCCGGGAGTTAAAA
GAAGTGGAGCGCGAACGAATGCTGATTATCGAGGGCAAGTCAGACGTAAT
ACCAGACGAACTAGCCAACGATCCCATATTCATGGTTAACAAAGATGCCA
ACATGGAGATTCAAAAGGAGCGCTCCAAGCTGAAGACCGCTCGCGAGAAG
AACGCGGAGCGTTTGAAGCTGCAGGGCGTTAAATGGGAGCGGGAAAGGCT
TCAACATGCCGCCAAGGAAGCCGAACTGCTGGCCAAGAAACGCGAGCGGC
ACCGCCAACAGAAATTACTGGTGGAGCAGTACAGGACCGAGGATGCGGAG
AGGGGAATGGATCTGCTGCGCATCGATAACGAAGACTGGCGGGAGTGCGA
AAAGAGCCTGAAGGAGTTCCTCGAACAGGAGCGTGCCAAAATGAAGGAGC
GTTCGTTGCGCATATCCCAGCCCTACTCCTCGGATCCCCAGGATATACAG
AATATAGTCAGGGCCAGGCAAAAGTTCCGGGAGACCGAGCTGCGTATTCG
CAATCAGCTGGAGGACAAGCTAAAAGATGTCAAACTTGCGGTCACCACTC
AACAACTAACCGAACTTATCGAGGATGCCCATCGTTCCAGCGGGGAGATC
ATCATGCCACAAGAACCTTCGATGGAGGACGATGACTTCCAGGGCGGCGC
AGTGAACTCCAAATATCTGGACGATGCCACCGATGTCTCCGAGGAGACGG
TGATCAGCGAGGATGCCATCAGCCTGACGCTGGCCAAGCAGCAGTACGCG
GAGGAACTGGAGGCCGAAATGGAGGACGAGTTCAATCGAGGTCTGCTCAT
CTCCAAGCAGCAGTACGATCAGCTGCGCTTCGAGGATGAGAAGATCGTGG
CGCTCAGAAATGCCAAGGATATTCGCGAGCTGTATCAACTGGCCGAGGAG
ATCATCATGGGTGAGAACTATGTCGAGGCACCGGAGGAGTGCGAGGAGGA
GGCGGTGGTGGAGGAGCCGGAACAAGATATCTCCTCCGATCACGAGGCCC
AGGAGCCAGCCAAAGCCTAATGAGAAGCTATAGAATAAAACCATTTTTTA
CGTTCGGTGGACAGCGGCTGGTCGTTTATCCTGCTGCACCAGTTTTTAGC
GAGTTCTACAATATTTGGCAAAATATTTGGTTTCCCATCCATGAGAGTCC
AGATATTTCACCAAATCGTGCAAACATCAATTAGGCTGGGGTACCTACCA
CAGTTTGTTAGACGTCGGAAGAGGTAGCGCAATCGAAAAACGTTAGCTAA
ACTGTCACTCAATCTCAGCGTTTAGGTTGATAACTTGATAACTGTCAATG
GGGTTTAATTAAAGCTGTAACGACTTGATTGTACCCGCATGACAACAAAA
ATAAAGCGGCCGAAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

AT11889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7196-RA 2005 CG7196-RA 31..1859 1..1829 9055 99.6 Plus
CG7196-RB 1090 CG7196-RB 33..1088 770..1825 5205 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7764299..7764803 1316..1820 2510 99.8 Plus
chr2L 23010047 chr2L 7763840..7764242 916..1318 2000 99.8 Plus
chr2L 23010047 chr2L 7753284..7753489 1..206 1030 100 Plus
chr2L 23010047 chr2L 7762609..7762801 578..770 965 100 Plus
chr2L 23010047 chr2L 7760976..7761130 294..448 760 99.4 Plus
chr2L 23010047 chr2L 7763627..7763775 770..918 745 100 Plus
chr2L 23010047 chr2L 7762413..7762549 443..579 685 100 Plus
chr2L 23010047 chr2L 7753551..7753642 202..293 460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7765212..7765725 1316..1829 2540 99.6 Plus
2L 23513712 2L 7764753..7765155 916..1318 1955 99 Plus
2L 23513712 2L 7754191..7754396 1..206 1030 100 Plus
2L 23513712 2L 7763504..7763696 578..770 965 100 Plus
2L 23513712 2L 7761885..7762039 294..448 760 99.4 Plus
2L 23513712 2L 7764540..7764688 770..918 745 100 Plus
2L 23513712 2L 7763308..7763444 443..579 685 100 Plus
2L 23513712 2L 7754458..7754549 202..293 460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7765212..7765725 1316..1829 2540 99.6 Plus
2L 23513712 2L 7764753..7765155 916..1318 1955 99 Plus
2L 23513712 2L 7754191..7754396 1..206 1030 100 Plus
2L 23513712 2L 7763504..7763696 578..770 965 100 Plus
2L 23513712 2L 7761885..7762039 294..448 760 99.3 Plus
2L 23513712 2L 7764540..7764688 770..918 745 100 Plus
2L 23513712 2L 7763308..7763444 443..579 685 100 Plus
2L 23513712 2L 7754458..7754549 202..293 460 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:23:54 has no hits.

AT11889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:24:56 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7753284..7753487 1..204 100 -> Plus
chr2L 7753554..7753642 205..293 100 -> Plus
chr2L 7760976..7761126 294..444 100 -> Plus
chr2L 7762415..7762549 445..579 100 -> Plus
chr2L 7762611..7762801 580..770 100 -> Plus
chr2L 7763628..7763774 771..917 100 -> Plus
chr2L 7763842..7764241 918..1317 99 -> Plus
chr2L 7764301..7764803 1318..1820 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:37:37 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1326 145..1470 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:20:57 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1326 145..1470 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:46:52 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1326 145..1470 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:58:31 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1326 145..1470 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:15 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG46025-RC 1..1326 145..1470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:37:37 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1820 1..1820 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:20:57 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1820 1..1820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:46:52 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 18..1837 1..1820 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:58:31 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG7196-RA 1..1820 1..1820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:15 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
CG46025-RC 18..1837 1..1820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:56 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7754461..7754549 205..293 100 -> Plus
2L 7761885..7762035 294..444 100 -> Plus
2L 7763310..7763444 445..579 100 -> Plus
2L 7763506..7763696 580..770 100 -> Plus
2L 7764541..7764687 771..917 100 -> Plus
2L 7754191..7754394 1..204 100 -> Plus
2L 7764755..7765154 918..1317 99 -> Plus
2L 7765214..7765716 1318..1820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:56 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7754461..7754549 205..293 100 -> Plus
2L 7761885..7762035 294..444 100 -> Plus
2L 7763310..7763444 445..579 100 -> Plus
2L 7763506..7763696 580..770 100 -> Plus
2L 7764541..7764687 771..917 100 -> Plus
2L 7754191..7754394 1..204 100 -> Plus
2L 7764755..7765154 918..1317 99 -> Plus
2L 7765214..7765716 1318..1820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:56 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7754461..7754549 205..293 100 -> Plus
2L 7761885..7762035 294..444 100 -> Plus
2L 7763310..7763444 445..579 100 -> Plus
2L 7763506..7763696 580..770 100 -> Plus
2L 7764541..7764687 771..917 100 -> Plus
2L 7754191..7754394 1..204 100 -> Plus
2L 7764755..7765154 918..1317 99 -> Plus
2L 7765214..7765716 1318..1820 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:46:52 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7754191..7754394 1..204 100 -> Plus
arm_2L 7754461..7754549 205..293 100 -> Plus
arm_2L 7761885..7762035 294..444 100 -> Plus
arm_2L 7763310..7763444 445..579 100 -> Plus
arm_2L 7763506..7763696 580..770 100 -> Plus
arm_2L 7764541..7764687 771..917 100 -> Plus
arm_2L 7764755..7765154 918..1317 99 -> Plus
arm_2L 7765214..7765716 1318..1820 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:31:08 Download gff for AT11889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7764755..7765154 918..1317 99 -> Plus
2L 7765214..7765716 1318..1820 99   Plus
2L 7754191..7754394 1..204 100 -> Plus
2L 7754461..7754549 205..293 100 -> Plus
2L 7761885..7762035 294..444 100 -> Plus
2L 7763310..7763444 445..579 100 -> Plus
2L 7763506..7763696 580..770 100 -> Plus
2L 7764541..7764687 771..917 100 -> Plus

AT11889.pep Sequence

Translation from 144 to 1469

> AT11889.pep
MARLVFTEKDHNAYDPKKYKVVHKNHWRQVSLLLQPSNKKWWEDPDVIVA
FNLPRISARLERLMGTNVVKLTDRSYMKELRERIDEDYRKQLLSRIRARE
LKEVERERMLIIEGKSDVIPDELANDPIFMVNKDANMEIQKERSKLKTAR
EKNAERLKLQGVKWERERLQHAAKEAELLAKKRERHRQQKLLVEQYRTED
AERGMDLLRIDNEDWRECEKSLKEFLEQERAKMKERSLRISQPYSSDPQD
IQNIVRARQKFRETELRIRNQLEDKLKDVKLAVTTQQLTELIEDAHRSSG
EIIMPQEPSMEDDDFQGGAVNSKYLDDATDVSEETVISEDAISLTLAKQQ
YAEELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLA
EEIIMGENYVEAPEECEEEAVVEEPEQDISSDHEAQEPAKA*

AT11889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15320-PA 438 GF15320-PA 1..403 1..406 1907 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10492-PA 439 GG10492-PA 1..439 1..441 2027 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13673-PA 428 GH13673-PA 1..403 1..407 1686 80.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-PA 441 CG46025-PA 1..441 1..441 2233 100 Plus
CG46025-PC 441 CG46025-PC 1..441 1..441 2233 100 Plus
CG46025-PD 596 CG46025-PD 206..596 51..441 1954 100 Plus
CG46025-PB 209 CG46025-PB 1..209 233..441 1041 100 Plus
rudhira-PE 2075 CG43154-PE 1402..1655 57..313 158 24.8 Plus
rudhira-PC 2075 CG43154-PC 1402..1655 57..313 158 24.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17101-PA 434 GI17101-PA 1..406 1..407 1568 77.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19282-PA 435 GL19282-PA 1..403 1..407 1756 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20173-PA 435 GA20173-PA 1..403 1..407 1755 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16547-PA 441 GM16547-PA 1..441 1..441 2221 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23484-PA 441 GD23484-PA 1..441 1..441 2234 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16139-PA 431 GJ16139-PA 1..405 1..407 1694 81.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24405-PA 528 GK24405-PA 128..494 47..407 1336 78.3 Plus
Dwil\GK24405-PA 528 GK24405-PA 1..50 1..50 277 94 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14606-PA 439 GE14606-PA 1..439 1..441 2043 93.4 Plus

AT11889.hyp Sequence

Translation from 144 to 1469

> AT11889.hyp
MARLVFTEKDHNAYDPKKYKVVHKNHWRQVSLLLQPSNKKWWEDPDVIVA
FNLPRISARLERLMGTNVVKLTDRSYMKELRERIDEDYRKQLLSRIRARE
LKEVERERMLIIEGKSDVIPDELANDPIFMVNKDANMEIQKERSKLKTAR
EKNAERLKLQGVKWERERLQHAAKEAELLAKKRERHRQQKLLVEQYRTED
AERGMDLLRIDNEDWRECEKSLKEFLEQERAKMKERSLRISQPYSSDPQD
IQNIVRARQKFRETELRIRNQLEDKLKDVKLAVTTQQLTELIEDAHRSSG
EIIMPQEPSMEDDDFQGGAVNSKYLDDATDVSEETVISEDAISLTLAKQQ
YAEELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLA
EEIIMGENYVEAPEECEEEAVVEEPEQDISSDHEAQEPAKA*

AT11889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG46025-PA 441 CG46025-PA 1..441 1..441 2233 100 Plus
CG46025-PC 441 CG46025-PC 1..441 1..441 2233 100 Plus
CG46025-PD 596 CG46025-PD 206..596 51..441 1954 100 Plus
CG46025-PB 209 CG46025-PB 1..209 233..441 1041 100 Plus
rudhira-PE 2075 CG43154-PE 1402..1655 57..313 158 24.8 Plus