Clone AT12128 Report

Search the DGRC for AT12128

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:121
Well:28
Vector:pOTB7
Associated Gene/TranscriptCG31286-RB
Protein status:AT12128.pep: gold
Sequenced Size:1806

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31286 2009-02-12 Manual selection by Sue Celniker

Clone Sequence Records

AT12128.complete Sequence

1806 bp assembled on 2009-07-24

GenBank Submission: BT088943.1

> AT12128.complete
ATTAGATGCCAAAATTTTCGTAGCGAGACTCCCGAAGAGCCTCTTTTCAA
AACTATGCTTTTAATAAGGAGTCTAGTAATTGTGTTTTTAGTAGCGATAA
GCGAGTTCGATCGAAACTTTGCCATAAACCATGACAATGCTGGAATAGTT
CTAAGGGAAATAAACAAGAGAAGAGATCGCCATGGAGTCCCAAAATTGAC
ATTGGACAACGTGCTCAGTAAGGGATGCCAAAGTTATGCTTGGAAACTGT
CCAAGTCGGCGACTCTTAACTATTCGGACCCCACTAACAAGGATTACACA
GAAAGCATCTGCAGATTTGAAGTAAAGAGGGGAGCACTGTCGAGATGTGT
CAAGAACTGGTATAATGGAAGGAAGTTCGATATTTTAGACCCCAAGGCTA
AAGATTTTACTGCCATGATTTGGAGGTCGTCCGTTTCCTTGGGATATGGC
GACGCTAACATAAATGCTCTTCAAGGGGTTTTCGTGGTCAGATATACTCC
ACCTGGGAATGTGAAAGGATTATACACGGATAATGTTCCTCCCAGGAAAA
GAAAACAAAAGAAAAAAAAGAGGGAAAACAAACAAAAAGAAGACTGTGCG
AGTCGTCAGGATAATCGATATGTCTTATTGTTGTCCATTCTTTCCTTGGT
GTCTACTAATTGGCAAAGTTGATGTCTACTATCTGGAACTAGTTAGTCAT
AGTCTTATTAATAGGACCAAAACTATCCTCCATGCCAAACGAAAATTATT
TGTGTAAGTCAAATATTTGTATGCTGGACAAAATCAAGCAATGTGTGTTC
TATCGCCTTGGTTTGGTCATTATAAATGTGTATGTATTATATATGTATGC
ATAAACGTTTTTAAGTTTTTCTTCGTTGGCACATCGTAGGCACCGAACGC
TCGGACATGTTCCCTGATTCGGACCGCATTGATGGCGATAAATCCACCGG
CATCCTGCGGCACATAGCCACCATGGACGTCCATAGATACGAGCTGTTCG
TTGTAAAGAGCTCCCACATCCTTCGCCGCCTTTCGGGCGATGGCACGGCA
ATAGCCTGGGGCCAGTTCCACGGTGACCTTCCCGGAGACCCGCTGCTCGG
CCAACTCGATACATTTACGGGCATAAATTGCCTCGGGACTGAACCAGAAG
CCATTGTACACGTAGTCGGCCATGCGATCCCGGAGAACCTGCTTGGTGCG
GAGTACTTCGCGGTCCAAAGCAAACACCTCGAGGTCCTGGTGGGCAGCAA
AGAGGATGGTGCCTCCAGGCGTCTCGTACACCCCCCGGGACTTCAGTCCC
ACAAAGCGATTTTCCACGATGTCAATCCGCCCAATGCCATATGATCCGCC
AAGCTTATTGAGGAAATCTAGCATCTCCAGGGGTTTAGTGTAGACCCGAC
CGCCGGGCAAATCCTCCACACTGGAGGGCAGTCCCCGATCAAATTGAATG
ACCAAGTGAACCGGATCCCGTGGAGCCCTTGTCAGGGGATCGACTGTCAT
CTCGTAGAGATTTTCCGGAGCCACTGTGTTGGGATCTTCGAGTATTCCGG
ACTCGTAGCTGATGTGCAGGATGTTGGCATCGGTGCTCCAGGGTGTGGCT
GGCTTGGCGCTTACCTCGATTCCGTGTTGCTGGGCATAGGCAATGAGGTC
CTGTCGACCTTGAAACTGGCAGCAGAATTCTACATCCCTCCAGGGAGCGA
TGATCTGGAAAAAAGTCGATTTCGCGTTTATAGCACAGTCAAATCTTTAA
ATTTGATCACATATGTATATTAAATTTCTATTTTCTAAAAAAAAAAAAAA
AAAAAA

AT12128.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31286-RB 1945 CG31286-RB 146..1932 1..1787 8935 100 Plus
CG31286-RC 1435 CG31286-RC 497..1422 862..1787 4615 99.8 Plus
CG1315.a 1493 CG1315.a 438..1280 1706..864 4215 100 Minus
CG31286-RC 1435 CG31286-RC 37..501 1..465 2325 100 Plus
CG1315.a 1493 CG1315.a 1334..1493 865..706 800 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2468205..2469127 864..1786 4615 100 Plus
chr3R 27901430 chr3R 2467877..2468151 591..865 1375 100 Plus
chr3R 27901430 chr3R 2467414..2467635 243..464 1110 100 Plus
chr3R 27901430 chr3R 2467219..2467358 104..243 700 100 Plus
chr3R 27901430 chr3R 2467700..2467825 465..590 630 100 Plus
chr3R 27901430 chr3R 2467061..2467165 1..105 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6642412..6643335 864..1787 4620 100 Plus
3R 32079331 3R 6642084..6642358 591..865 1375 100 Plus
3R 32079331 3R 6641621..6641842 243..464 1110 100 Plus
3R 32079331 3R 6641426..6641565 104..243 700 100 Plus
3R 32079331 3R 6641907..6642032 465..590 630 100 Plus
3R 32079331 3R 6641268..6641372 1..105 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6383243..6384166 864..1787 4620 100 Plus
3R 31820162 3R 6382915..6383189 591..865 1375 100 Plus
3R 31820162 3R 6382452..6382673 243..464 1110 100 Plus
3R 31820162 3R 6382257..6382396 104..243 700 100 Plus
3R 31820162 3R 6382738..6382863 465..590 630 100 Plus
3R 31820162 3R 6382099..6382203 1..105 525 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:15:04 has no hits.

AT12128.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:51 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2467061..2467165 1..105 100 -> Plus
chr3R 2467221..2467358 106..243 100 -> Plus
chr3R 2467415..2467635 244..464 100 -> Plus
chr3R 2467700..2467778 465..543 100 == Plus
chr3R 2467877..2468151 591..865 100 -> Plus
chr3R 2468207..2469127 866..1786 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:48 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 1..618 55..672 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:00:10 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 1..618 55..672 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:36 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 1..618 55..672 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:55:27 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 1..618 55..672 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-24 16:16:21 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 37..1822 1..1786 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:00:10 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 37..1822 1..1786 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:36 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 37..1822 1..1786 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:55:27 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
CG31286-RB 37..1822 1..1786 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:51 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6641268..6641372 1..105 100 -> Plus
3R 6641428..6641565 106..243 100 -> Plus
3R 6641622..6641842 244..464 100 -> Plus
3R 6641907..6642032 465..590 100 -> Plus
3R 6642084..6642358 591..865 100 -> Plus
3R 6642414..6643334 866..1786 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:51 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6641268..6641372 1..105 100 -> Plus
3R 6641428..6641565 106..243 100 -> Plus
3R 6641622..6641842 244..464 100 -> Plus
3R 6641907..6642032 465..590 100 -> Plus
3R 6642084..6642358 591..865 100 -> Plus
3R 6642414..6643334 866..1786 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:51 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6641268..6641372 1..105 100 -> Plus
3R 6641428..6641565 106..243 100 -> Plus
3R 6641622..6641842 244..464 100 -> Plus
3R 6641907..6642032 465..590 100 -> Plus
3R 6642084..6642358 591..865 100 -> Plus
3R 6642414..6643334 866..1786 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:36 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2466990..2467094 1..105 100 -> Plus
arm_3R 2467150..2467287 106..243 100 -> Plus
arm_3R 2467344..2467564 244..464 100 -> Plus
arm_3R 2467629..2467754 465..590 100 -> Plus
arm_3R 2467806..2468080 591..865 100 -> Plus
arm_3R 2468136..2469056 866..1786 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:51:53 Download gff for AT12128.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6382738..6382863 465..590 100 -> Plus
3R 6382453..6382673 244..464 100 -> Plus
3R 6382915..6383189 591..865 100 -> Plus
3R 6383245..6384165 866..1786 100   Plus
3R 6382099..6382203 1..105 100 -> Plus
3R 6382259..6382396 106..243 100 -> Plus

AT12128.hyp Sequence

Translation from 0 to 671

> AT12128.hyp
IRCQNFRSETPEEPLFKTMLLIRSLVIVFLVAISEFDRNFAINHDNAGIV
LREINKRRDRHGVPKLTLDNVLSKGCQSYAWKLSKSATLNYSDPTNKDYT
ESICRFEVKRGALSRCVKNWYNGRKFDILDPKAKDFTAMIWRSSVSLGYG
DANINALQGVFVVRYTPPGNVKGLYTDNVPPRKRKQKKKKRENKQKEDCA
SRQDNRYVLLLSILSLVSTNWQS*

AT12128.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31286-PB 205 CG31286-PB 1..205 19..223 1072 100 Plus
CG31482-PA 195 CG31482-PA 1..159 19..181 215 31 Plus
CG32313-PB 182 CG32313-PB 5..164 26..182 188 34.1 Plus
CG32313-PA 181 CG32313-PA 5..163 26..182 187 34.7 Plus
CG4270-PA 170 CG4270-PA 35..170 50..183 163 35.5 Plus

AT12128.pep Sequence

Translation from 0 to 671

> AT12128.pep
IRCQNFRSETPEEPLFKTMLLIRSLVIVFLVAISEFDRNFAINHDNAGIV
LREINKRRDRHGVPKLTLDNVLSKGCQSYAWKLSKSATLNYSDPTNKDYT
ESICRFEVKRGALSRCVKNWYNGRKFDILDPKAKDFTAMIWRSSVSLGYG
DANINALQGVFVVRYTPPGNVKGLYTDNVPPRKRKQKKKKRENKQKEDCA
SRQDNRYVLLLSILSLVSTNWQS*

AT12128.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18369-PA 173 GF18369-PA 26..156 51..180 218 37 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13579-PA 196 GG13579-PA 1..159 19..179 690 80.7 Plus
Dere\GG13534-PA 197 GG13534-PA 1..173 19..194 221 31.3 Plus
Dere\GG14591-PA 217 GG14591-PA 5..163 26..182 197 32.9 Plus
Dere\GG24843-PA 170 GG24843-PA 35..170 50..183 164 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15654-PA 128 GH15654-PA 3..128 58..184 183 35.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31286-PB 205 CG31286-PB 1..205 19..223 1072 100 Plus
CG31482-PA 195 CG31482-PA 1..159 19..181 215 31 Plus
CG32313-PB 182 CG32313-PB 5..164 26..182 188 34.1 Plus
CG32313-PA 181 CG32313-PA 5..163 26..182 187 34.7 Plus
CG4270-PA 170 CG4270-PA 35..170 50..183 163 35.5 Plus
CG34049-PB 306 CG34049-PB 149..284 50..183 147 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14152-PA 169 GI14152-PA 34..166 50..180 143 34.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21759-PA 134 GL21759-PA 2..127 61..183 179 38 Plus
Dper\GL23728-PA 166 GL23728-PA 25..154 50..180 164 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16278-PA 134 GA16278-PA 2..127 61..183 182 38 Plus
Dpse\GA25572-PA 201 GA25572-PA 4..154 26..180 180 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10906-PA 205 GM10906-PA 1..205 19..223 899 89.8 Plus
Dsec\GM10902-PA 247 GM10902-PA 79..247 51..220 218 30.9 Plus
Dsec\GM14205-PA 218 GM14205-PA 5..163 26..182 201 35.3 Plus
Dsec\GM18327-PA 170 GM18327-PA 35..170 50..183 171 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19885-PA 205 GD19885-PA 1..205 19..223 899 90.7 Plus
Dsim\GD19881-PA 184 GD19881-PA 16..161 51..193 217 32.9 Plus
Dsim\GD23143-PA 170 GD23143-PA 35..170 50..183 172 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10085-PA 194 GJ10085-PA 61..194 50..184 206 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11578-PA 150 GK11578-PA 12..146 50..180 204 35 Plus
Dwil\GK11171-PA 172 GK11171-PA 36..169 50..183 184 36.7 Plus
Dwil\GK14990-PA 171 GK14990-PA 25..166 45..180 143 33.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10233-PA 207 GE10233-PA 1..205 19..221 778 77.1 Plus
Dyak\GE10228-PA 193 GE10228-PA 27..170 51..193 213 33.8 Plus
Dyak\GE10229-PA 193 GE10229-PA 1..161 19..183 210 33.3 Plus
Dyak\GE20951-PA 217 GE20951-PA 5..163 26..182 194 34.7 Plus
Dyak\GE18084-PA 170 GE18084-PA 35..170 50..183 167 34.8 Plus