Clone AT12351 Report

Search the DGRC for AT12351

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:123
Well:51
Vector:pOTB7
Associated Gene/TranscriptCG5048-RA
Protein status:AT12351.pep: gold
Preliminary Size:810
Sequenced Size:981

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5048 2002-01-01 Sim4 clustering to Release 2
CG5048 2002-04-26 Blastp of sequenced clone
CG5048 2003-01-01 Sim4 clustering to Release 3
CG5048 2008-04-29 Release 5.5 accounting
CG5048 2008-08-15 Release 5.9 accounting
CG5048 2008-12-18 5.12 accounting

Clone Sequence Records

AT12351.complete Sequence

981 bp (981 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113242

> AT12351.complete
CCTCGTGCCGCTTAGCCTAGCAGTGCTCAACCTGTCTAAAAGCTAAAGCT
ACAAATATATTTATAACTTGTGAAAAAGTGTGAGATCCAGTGATAGTCCG
TCCATAAAGTGCCTTCAAGCCACATAGTGAAAATGTCGATCTTTGACCAT
CCCGAACAGCTGAAAATGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAG
AGGCGGCATTGACTACAGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTG
TCAATAAGATGAACCCTGGAACAATTGGACGTCCTAATGGGGAGGATGGA
ACCGCTAAGGGTAAGAAGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTT
GGTGGAGGAAGAGAAAAAACAGCCCGAGAGTCTGGAAGAATGGCAAGATC
AGCAGGAGAAGGAAGACATGGATATACTTGAATCGCGGAAGACTCCCGAG
TATACGATGACCTATCGCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCA
GATGGGCAATCGCACTGGATCCTCGGCCAGCTGTGAGGACCTCATTTTGG
AGGTTTCCCTGCCGGACGAGGAAATGACTGCTGACAAAATGTCGCTCAGC
TTGCAGGAAACTGAATTGGATTTGGGTACATGTTTGTACCGCTTACGATT
ACCGCTTCCCCATCCCGTCAATGTTGATCGTTGTCATGCAAAATACGATA
GTGAGCTGAAGAAACTACGTCTCACTCTGCGCCTGCAGCGCGAACTAGAC
TATGTTAATTTTTAAAAACGGACTAAATAATTAATTTTTAATTGCTTTCA
TATTACACAATAGGAACACACAGTATAAATTATAGTCCCAAAATTTTAGC
GTGTCTGAAAAATTTGTTTGCATCGTTTGCTTAGATACAAGATGTATGTC
TTTTAATATTATATGGTCATTTACTTTGTGTATCAGGAATTAAAACATTC
TTAACCACCAACAAAAAAAAAAAAAAAAAAA

AT12351.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 1105 CG5048-RA 135..1085 10..960 4665 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14675504..14675966 500..962 2255 99.1 Plus
chr3L 24539361 chr3L 14674903..14675155 10..262 1265 100 Plus
chr3L 24539361 chr3L 14675208..14675446 263..501 1180 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685380..14685840 500..960 2230 98.9 Plus
3L 28110227 3L 14684779..14685031 10..262 1265 100 Plus
3L 28110227 3L 14685084..14685322 263..501 1180 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14678480..14678940 500..960 2230 98.9 Plus
3L 28103327 3L 14677879..14678131 10..262 1265 100 Plus
3L 28103327 3L 14678184..14678422 263..501 1180 99.5 Plus
Blast to na_te.dros performed 2019-03-16 18:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 373..445 119 64.4 Plus

AT12351.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:46:25 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14675506..14675966 502..962 99   Plus
chr3L 14674903..14675155 10..262 100 -> Plus
chr3L 14675208..14675446 263..501 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:01:55 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 133..765 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:49 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 133..765 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:56 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 133..765 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:50:11 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 133..765 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:42 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 133..765 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:36:28 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 55..1007 10..962 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:49 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 55..1007 10..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:56 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 12..964 10..962 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:50:11 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 55..1007 10..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:42 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 12..964 10..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:25 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14685382..14685842 502..962 98   Plus
3L 14684779..14685031 10..262 100 -> Plus
3L 14685084..14685322 263..501 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:25 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14685382..14685842 502..962 98   Plus
3L 14684779..14685031 10..262 100 -> Plus
3L 14685084..14685322 263..501 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:25 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14685382..14685842 502..962 98   Plus
3L 14684779..14685031 10..262 100 -> Plus
3L 14685084..14685322 263..501 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:56 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14677879..14678131 10..262 100 -> Plus
arm_3L 14678184..14678422 263..501 99 -> Plus
arm_3L 14678482..14678942 502..962 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:22:02 Download gff for AT12351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14677879..14678131 10..262 100 -> Plus
3L 14678184..14678422 263..501 99 -> Plus
3L 14678482..14678942 502..962 98   Plus

AT12351.pep Sequence

Translation from 132 to 764

> AT12351.pep
MSIFDHPEQLKMLQGLLNPNQRRGGIDYSSSEDEEESMVVNKMNPGTIGR
PNGEDGTAKGKKKKKPNPLCTPLVEEEKKQPESLEEWQDQQEKEDMDILE
SRKTPEYTMTYRQAVGTEDVFLQMGNRTGSSASCEDLILEVSLPDEEMTA
DKMSLSLQETELDLGTCLYRLRLPLPHPVNVDRCHAKYDSELKKLRLTLR
LQRELDYVNF*

AT12351.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24613-PA 211 GF24613-PA 1..211 1..210 818 79.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15691-PA 209 GG15691-PA 1..209 1..210 871 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14755-PA 210 GH14755-PA 1..210 1..210 656 67.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 210 CG5048-PA 1..210 1..210 1099 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11496-PA 210 GI11496-PA 1..210 1..210 663 68.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24527-PA 214 GL24527-PA 1..214 1..210 630 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23617-PA 214 GA23617-PA 1..214 1..210 630 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25474-PA 210 GM25474-PA 1..210 1..210 1085 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14497-PA 210 GD14497-PA 1..210 1..210 1089 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13691-PA 213 GJ13691-PA 1..213 1..210 656 69 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12880-PA 372 GK12880-PA 1..204 1..207 705 71.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22022-PA 210 GE22022-PA 1..210 1..210 868 91.4 Plus

AT12351.hyp Sequence

Translation from 132 to 764

> AT12351.hyp
MSIFDHPEQLKMLQGLLNPNQRRGGIDYSSSEDEEESMVVNKMNPGTIGR
PNGEDGTAKGKKKKKPNPLCTPLVEEEKKQPESLEEWQDQQEKEDMDILE
SRKTPEYTMTYRQAVGTEDVFLQMGNRTGSSASCEDLILEVSLPDEEMTA
DKMSLSLQETELDLGTCLYRLRLPLPHPVNVDRCHAKYDSELKKLRLTLR
LQRELDYVNF*

AT12351.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 210 CG5048-PA 1..210 1..210 1099 100 Plus