Clone AT12403 Report

Search the DGRC for AT12403

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:124
Well:3
Vector:pOTB7
Associated Gene/TranscriptCG15572-RA
Protein status:AT12403.pep: gold
Preliminary Size:1458
Sequenced Size:2413

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15572 2002-01-01 Sim4 clustering to Release 2
CG15572 2002-05-17 Blastp of sequenced clone
CG15572 2003-01-01 Sim4 clustering to Release 3
CG15572 2008-04-29 Release 5.5 accounting
CG15572 2008-08-15 Release 5.9 accounting
CG15572 2008-12-18 5.12 accounting

Clone Sequence Records

AT12403.complete Sequence

2413 bp (2413 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118685

> AT12403.complete
ACACATACACCCTCCATTCGATCGGCAAAATTTATCTTTCGGCAACATAC
TAAAAACTGTTGTAAATTATCGTATCTGTATCGTGTTCTTCTGTTGGATT
ATTGGTCCCAAGTGTGTAGACGACTGCCCGTTCTCCGGTTTTCCTCCAGA
CCGTAATAAGATAACCGCAGAAAAGTCCAACGAAGCAGCTCAACAAAAAT
TCTAAATATAATACCGAGAATAATCATCAACCATCAAATACATCAGTCCA
CTAGCCGAATTAGCAAGCACTGTCCTGTAACCAGCATACCACGCCTTTGG
GAATATCTATTGTGACAGAGGACGAGCAATGGAGGATTTGCATTTAAAAC
TCGGCGATCTGCCCCAGGAAGTATTGGCTGCACGGCACAGCATGATTATG
GGCCAAAAGTTGGCTGGATCACTTGGTGAGACACAGCATCACCTTCAGCA
TCAACATCACCTGAATCACCAACTGAACCAGCTCAATCAGTTGAGCCACT
TGAATCAGTTCCATCAGTTAAACCAATTGAATCAATTGAGTCAGCTACAC
CAGCATATACAACATAAGATCTCTTCGGGGATGAACCTAAATTTGGATCT
GGACCATAAGATGGAGACGGAGATGGAGTTGGGTCTGGGCCTTGATGTGG
ATGTGAATCTGGGAGTTAATCTGGACATGAATCCGGAGGGCAGTATTACC
AATAGTACCAGCCGTACCAGCAGTGCTAGCAGGACCAGCAGCACCAACAC
GTGCAGCGATCAGGGGCAAGGACATGGATCTGGGATTGGACTTGGTGACC
CAAAGCGGGACCAAAGCCAAGTCCACTACGCCCATGACCCTGCCCAGGAT
AATGGCGATTCACCGAATGTCAAGAGTTGTACTGGAATGTGCAGCCATCA
AACAGAGAGCAATATGAATAAGGGGGATTCCCTAACGCATACCAAGTCTT
CATCGCCGAAGACGGACAAGGGGGAGAAGGATAAGGAGGAGCTTAAAGCG
AAGGAGGAGGAGGAGGAGGAGTTTAAAGAGGATACGGAGGATAAGAAGGA
TAACGAGGACGTTTTCCAGAAACAGGAACCGTCTTCTTCCATGTTGATTA
AGGCGGCCAACTCCAAGCTAAATGTCAATGCCACTGTTTACACGATGCCA
GCCAAAGTAGAACCCCTTCATGACGGATCATTCGTGCCCCAACCGAGTTC
CAGTGCCACCTCACAGGGCACTGGGGACTATCGCCTCAATGCCCAGGCTG
CTGTATTCAAGCCATCTTTGATGTGCATTTGCTCGTTGGCTTCGCCGGTG
GTTTTGCAACGACTACGTCCGATTGTAGTACGGCCACCACTACCGGGGGT
ATCGCAACACCTGATGTCGGACATTTCACAGCCTCTACTGCCGAACTCGC
CACTGATGAGCCACGAGTTCTTAGCCCATGGTTTTCATCCAATGCAAAGG
TCGGGCCATAAACCAAGTGGCCGCTGGCGCAAACAACCGCTTCCGGACTT
GTTCAGCGCCGTCATGTCACTGGTGACGGAACTGAAGCGATCGGTGAGCT
ATCCGGAGATCATAAGCTGCCTATCCAAGAGACTCCATCGAGCGGAGGTG
GAACTGAAGCGCCATGTACCGCACACATTGCACGCCGCCGTTAACAATGG
CTATTTGAAGAAGGAGGGCAATCGCTATTCCCTGCTCCCCGAAGTGGAAC
AGGCTGAGATCATGCGACGCAACATCGCGGATGCTCTTCGGGCCAAGGAG
CTGGAGAAGGAGCCGTTGTCCTGGCGCAGGCGTTAATGTACGCAAAACCA
ATCCTCAACTACGTTCACAACCTGGCATCTACACGCATCATCCCGCATCC
CGCAATCCACATTCTGCATCCTGCATCTTTATCATCGCATTTCATATCCT
TCTGCTTCATACATTTTATAATTAAGCTTGCACAGCACTCGAGGCTGTGA
GCATGTAGTCCTGTGCGTTGCACAACCCAGAGCCCCGAGTTCTGTGCCGC
CGACGAGCCCCGCAATTTGGTTTTACTGTACGTGACCTACGTCTGCGAAA
CAGCGGTCCGTGTGATCCTCGATGCGTGGCCTGTGCTTAAAGGCACGCAA
TCTTCGATCCGCGATCGACGAGCAGAAGAAGAATTCACGATGACAAAAGT
ATACATTGTATACAAGTCCAATGGGGACGGTTTAGTCGATATGCTGCCTC
CAGAGGATATTTCGTTGCCTGATGTTCCCTTCAGCGTTAAAACAATCACG
TTTTTCTGGTTAAGCGCTTTATTATTGCAAGCTATTCGGGTAAATTCATC
AAACTTATTAATGGATGGAGATGTGGGGTTAATAAATGGCTTCCGCTAAT
TGGTATGATTACGTAAGACCTACGCAGTTATAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

AT12403.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15572-RA 2385 CG15572-RA 3..2385 1..2383 11900 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4161759..4164139 1..2381 11875 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4268703..4271086 1..2384 11905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4276801..4279184 1..2384 11905 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 18:45:45 has no hits.

AT12403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:46:32 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4161759..4162726 1..968 100 == Plus
chrX 4162780..4164139 1022..2381 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:01:56 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 1..1458 329..1786 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:07 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 1..1458 329..1786 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:08 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 1..1458 329..1786 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:44 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 1..1458 329..1786 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:54 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 1..1458 329..1786 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:22 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 3..2383 1..2381 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:07 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 3..2383 1..2381 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:08 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 3..2383 1..2381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:44 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 3..2383 1..2381 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:54 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
CG15572-RA 3..2383 1..2381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:32 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
X 4268703..4271083 1..2381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:32 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
X 4268703..4271083 1..2381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:32 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
X 4268703..4271083 1..2381 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:08 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4162736..4165116 1..2381 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:02 Download gff for AT12403.complete
Subject Subject Range Query Range Percent Splice Strand
X 4276801..4279181 1..2381 99   Plus

AT12403.hyp Sequence

Translation from 328 to 1785

> AT12403.hyp
MEDLHLKLGDLPQEVLAARHSMIMGQKLAGSLGETQHHLQHQHHLNHQLN
QLNQLSHLNQFHQLNQLNQLSQLHQHIQHKISSGMNLNLDLDHKMETEME
LGLGLDVDVNLGVNLDMNPEGSITNSTSRTSSASRTSSTNTCSDQGQGHG
SGIGLGDPKRDQSQVHYAHDPAQDNGDSPNVKSCTGMCSHQTESNMNKGD
SLTHTKSSSPKTDKGEKDKEELKAKEEEEEEFKEDTEDKKDNEDVFQKQE
PSSSMLIKAANSKLNVNATVYTMPAKVEPLHDGSFVPQPSSSATSQGTGD
YRLNAQAAVFKPSLMCICSLASPVVLQRLRPIVVRPPLPGVSQHLMSDIS
QPLLPNSPLMSHEFLAHGFHPMQRSGHKPSGRWRKQPLPDLFSAVMSLVT
ELKRSVSYPEIISCLSKRLHRAEVELKRHVPHTLHAAVNNGYLKKEGNRY
SLLPEVEQAEIMRRNIADALRAKELEKEPLSWRRR*

AT12403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15572-PA 485 CG15572-PA 1..485 1..485 2534 100 Plus

AT12403.pep Sequence

Translation from 328 to 1785

> AT12403.pep
MEDLHLKLGDLPQEVLAARHSMIMGQKLAGSLGETQHHLQHQHHLNHQLN
QLNQLSHLNQFHQLNQLNQLSQLHQHIQHKISSGMNLNLDLDHKMETEME
LGLGLDVDVNLGVNLDMNPEGSITNSTSRTSSASRTSSTNTCSDQGQGHG
SGIGLGDPKRDQSQVHYAHDPAQDNGDSPNVKSCTGMCSHQTESNMNKGD
SLTHTKSSSPKTDKGEKDKEELKAKEEEEEEFKEDTEDKKDNEDVFQKQE
PSSSMLIKAANSKLNVNATVYTMPAKVEPLHDGSFVPQPSSSATSQGTGD
YRLNAQAAVFKPSLMCICSLASPVVLQRLRPIVVRPPLPGVSQHLMSDIS
QPLLPNSPLMSHEFLAHGFHPMQRSGHKPSGRWRKQPLPDLFSAVMSLVT
ELKRSVSYPEIISCLSKRLHRAEVELKRHVPHTLHAAVNNGYLKKEGNRY
SLLPEVEQAEIMRRNIADALRAKELEKEPLSWRRR*

AT12403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21482-PA 778 GF21482-PA 665..778 372..485 450 72.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18701-PA 472 GG18701-PA 1..472 1..485 1425 70.6 Plus
Dere\GG18700-PA 150 GG18700-PA 11..81 384..454 147 35.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24672-PA 189 GH24672-PA 94..189 390..485 258 55.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15572-PA 485 CG15572-PA 1..485 1..485 2534 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16138-PA 420 GI16138-PA 319..420 384..485 367 68.6 Plus
Dmoj\GI16408-PA 128 GI16408-PA 6..81 379..454 152 39.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14190-PA 501 GL14190-PA 398..501 382..485 394 74 Plus
Dper\GL14191-PA 192 GL14191-PA 12..78 384..451 151 45.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13821-PA 465 GA13821-PA 362..465 382..485 394 74 Plus
Dpse\GA11759-PA 270 GA11759-PA 12..78 384..451 149 45.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12337-PA 253 GM12337-PA 144..253 376..485 564 94.5 Plus
Dsec\GM12337-PA 253 GM12337-PA 1..128 1..121 425 80.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16683-PA 503 GD16683-PA 1..503 1..485 1769 78.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16413-PA 467 GJ16413-PA 366..467 384..485 361 68.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17544-PA 491 GK17544-PA 388..491 382..485 431 75 Plus
Dwil\GK15636-PA 406 GK15636-PA 337..396 389..448 159 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16339-PA 483 GE16339-PA 1..483 1..485 1478 73.3 Plus