Clone AT12418 Report

Search the DGRC for AT12418

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:124
Well:18
Vector:pOTB7
Associated Gene/Transcriptasrij-RA
Protein status:AT12418.pep: gold
Preliminary Size:774
Sequenced Size:1087

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13533 2002-01-01 Sim4 clustering to Release 2
CG13533 2002-02-22 Blastp of sequenced clone
CG13533 2003-01-01 Sim4 clustering to Release 3
asrij 2008-04-29 Release 5.5 accounting
asrij 2008-08-15 Release 5.9 accounting
asrij 2008-12-18 5.12 accounting

Clone Sequence Records

AT12418.complete Sequence

1087 bp (1087 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089314

> AT12418.complete
ATCAACTGTAAATGAATGTTGTCTTTGTTATTTAGTTTTAACTTCTTAAA
GAAAAAGGTTTTTAACCAGTTTAGGATAGACAAAGAGTCCCTATCGCAAC
CATCGTGCATAGATCGACCATCACTAGTTCTGGAGATGTGCAGAAGTCAC
TGGCCCGTTTCGCCGGCGACCAGGGTTGGCAAATCGGCTGCGCCGGTAGT
TGGTCCGTTATACATTTCACAAATTCCACATTAAATTGTATCAGCATGGA
CTCCCCGCTGAACGATGGCTCTCACCATCCACCGCCGCACGCTCCCCACC
CCCTGGCGGACTATCAGTTTTCTGCGGAGGAGGTGAAGGCGTTACGTGAG
TGCAACACTGAGTCTTTCTTCCAGCGCAGCCTGCCTTTCGGCACTGGACT
GGGCCTGCTGGCCTACTTCGGCGTCAAGAACGGCTATTTGCAGGGACACG
TCAAGTACGGCGCCGTGCCCAAGGTCGTGATGGGCGTCATTCTGGGCTAC
TTTGTGGGCAAGTTCAGTTACCAGCAGAAGTGTGCCGAGAAGATCATGCG
CCTACCCAACTCCCATCTGGGCGAGCTGCTGCGTCAGCGTAGACAGGGCG
GCGGTGTCATCAGCTCCATCACACCGGACGAGAATCTGGGCAGGGCCTTC
ACTCTGGCCCCCTTCTCGCCGAGCTCGGCGGACGTGTACAGCGATGAGGC
GTATCAGCCCGGGAGGAGCACTTCTCTCAATCTGGACACGGAATCGCGCC
CTACTTTGTCCGGCCTTGACGACATCTACCGCCCCACCCTGGACTCTGGT
TCAATGCTGGAGGCGGAGTTGCCCTTGGAGCCGTCTAAGCCGGGCCAGTC
TTACGAGGACCTGCGACGAAGGAACCGAGAAGAGTACTCAAAGCACCAGC
AGAGTCCATACTCGCGACCTTACGAACCACCAGTTGCCGTTCAACAGCGA
CCCGTGGAGCAGGCACAAAGTGAACCCGCTGGAAGGAAGAACCAATACGG
CGACTCCTGGACTGATTAAGGTATTGTTATTTTGTTGGACATTAAACGCG
CATAAAGTTCTGTGAAAAAAAAAAAAAAAAAAAAAAA

AT12418.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-RA 1068 asrij-RA 1..1068 1..1068 5295 99.7 Plus
asrij.a 1071 asrij.a 1..1071 1..1068 5240 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18773276..18773766 305..795 2455 100 Plus
chr2R 21145070 chr2R 18772916..18773221 1..306 1530 100 Plus
chr2R 21145070 chr2R 18773828..18774096 796..1064 1345 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22886758..22887248 305..795 2455 100 Plus
2R 25286936 2R 22886398..22886703 1..306 1530 100 Plus
2R 25286936 2R 22887310..22887582 796..1068 1320 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22887957..22888447 305..795 2455 100 Plus
2R 25260384 2R 22887597..22887902 1..306 1530 100 Plus
2R 25260384 2R 22888509..22888781 796..1068 1320 98.9 Plus
Blast to na_te.dros performed 2019-03-16 18:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 3664..3709 86..39 109 72.9 Minus

AT12418.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:47:35 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18772916..18773220 1..305 100 -> Plus
chr2R 18773277..18773766 306..795 100 -> Plus
chr2R 18773828..18774096 796..1064 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:01:58 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..774 246..1019 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:16 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..774 246..1019 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:21 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..774 246..1019 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:19 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..774 246..1019 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:10 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..774 246..1019 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:20 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:16 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:21 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:20 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:10 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..1064 1..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:35 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22886398..22886702 1..305 100 -> Plus
2R 22886759..22887248 306..795 100 -> Plus
2R 22887310..22887578 796..1064 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:35 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22886398..22886702 1..305 100 -> Plus
2R 22886759..22887248 306..795 100 -> Plus
2R 22887310..22887578 796..1064 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:35 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22886398..22886702 1..305 100 -> Plus
2R 22886759..22887248 306..795 100 -> Plus
2R 22887310..22887578 796..1064 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:21 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18773921..18774225 1..305 100 -> Plus
arm_2R 18774282..18774771 306..795 100 -> Plus
arm_2R 18774833..18775101 796..1064 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:31 Download gff for AT12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22887615..22887919 1..305 100 -> Plus
2R 22887976..22888465 306..795 100 -> Plus
2R 22888527..22888795 796..1064 98   Plus

AT12418.hyp Sequence

Translation from 245 to 1018

> AT12418.hyp
MDSPLNDGSHHPPPHAPHPLADYQFSAEEVKALRECNTESFFQRSLPFGT
GLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKFSYQQKCAEKI
MRLPNSHLGELLRQRRQGGGVISSITPDENLGRAFTLAPFSPSSADVYSD
EAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPG
QSYEDLRRRNREEYSKHQQSPYSRPYEPPVAVQQRPVEQAQSEPAGRKNQ
YGDSWTD*

AT12418.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-PA 257 CG13533-PA 1..257 1..257 1365 100 Plus
asrij-PB 258 CG13533-PB 1..258 1..257 1353 99.6 Plus

AT12418.pep Sequence

Translation from 245 to 1018

> AT12418.pep
MDSPLNDGSHHPPPHAPHPLADYQFSAEEVKALRECNTESFFQRSLPFGT
GLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKFSYQQKCAEKI
MRLPNSHLGELLRQRRQGGGVISSITPDENLGRAFTLAPFSPSSADVYSD
EAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPG
QSYEDLRRRNREEYSKHQQSPYSRPYEPPVAVQQRPVEQAQSEPAGRKNQ
YGDSWTD*

AT12418.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13552-PA 259 GF13552-PA 1..259 1..257 1153 84.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22811-PA 257 GG22811-PA 1..257 1..257 1301 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21455-PA 259 GH21455-PA 1..259 1..257 1033 76.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-PA 257 CG13533-PA 1..257 1..257 1365 100 Plus
asrij-PB 258 CG13533-PB 1..258 1..257 1353 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19931-PA 261 GI19931-PA 1..261 1..257 1047 78.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10133-PA 260 GL10133-PA 1..260 1..257 1077 79.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12348-PA 260 GA12348-PA 1..260 1..257 1074 79.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15968-PA 257 GM15968-PA 1..257 1..257 1329 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11720-PA 239 GD11720-PA 2..239 20..257 1235 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15098-PA 264 GJ15098-PA 1..264 1..257 1060 78 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20790-PA 265 GK20790-PA 1..265 1..257 1116 80.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14245-PA 257 GE14245-PA 1..257 1..257 1297 95.3 Plus