Clone AT12437 Report

Search the DGRC for AT12437

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:124
Well:37
Vector:pOTB7
Associated Gene/TranscriptCG30284-RB
Protein status:AT12437.pep: gold
Sequenced Size:1150

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9856 2002-01-01 Sim4 clustering to Release 2
CG30284 2002-04-21 Blastp of sequenced clone
CG30284 2003-01-01 Sim4 clustering to Release 3
CG30284 2008-04-29 Release 5.5 accounting
CG30284 2008-08-15 Release 5.9 accounting
CG30284 2008-12-18 5.12 accounting

Clone Sequence Records

AT12437.complete Sequence

1150 bp (1150 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113243

> AT12437.complete
TTCGATTTTATGGTGTCATTGACAATGTTTTAATTGAAGATGACTAAGAA
CGTTGGCTAGAATATGAAGTCGATTCAGGCCCGGTTGAACCACCGATTCC
GAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGAATG
AGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGTAGTCCGCT
GAACTCTGAGGAATTTCAGGACTCGGCAACGGCTGCCGCCACACAACAAC
GGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGATAAA
ACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGACGAC
AAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCAAGC
TGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTGGTC
AGCAGAGAAAATATACCGCAAACATCCGGGTACAGAAGGCCAGAGGACCT
AACCGCCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGAGC
GGCTGATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCCTCG
CCGTTCCTGCAGAGCTTCCATGAGCGGCGCAAGTCCACCGATCTGAATAT
GGGCGTCTGGGCGCGAAATGCCGGCGGCCAGAATCAGCGCACTGTCTCAA
TGACTGTGGCACTTCAGGCGAACGTTGGTCCCAAAACTGCCAAAATTACC
GAGACACAGACCATGCGCGAGTGCAGCCAACCCGGCCAACTGTACTCGAT
CGATGTGCAGAGCGTTAACGCAGATATCCCCTACGCGGACACCTTCGTCG
TCCTGATGCACTTCTGCCTGAAGGCCACCGTGGAAGAGCACACGGACGTT
TTGGTCTTTGCCGAGATCCAGTTTCTCAAGTCCGTGTGGGCAGTGGTCAA
GACCTTTATCGAGAGGAACGCGTACGCGGGTCTCGAGGAGTTCTGTCAAT
CTCTATACAGCGCCCTACTGATTGAGATTAGGAAGATGTAGGCGGCCAGA
GGGCTCAAATACACTTCAAAATAGCTGACTGTGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT12437.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RB 1083 CG30284-RB 1..1083 1..1083 5385 99.8 Plus
CG30284-RA 1175 CG30284-RA 575..1175 478..1078 3005 100 Plus
CG30284-RA 1175 CG30284-RA 14..492 1..479 2365 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17537268..17537873 1083..478 3030 100 Minus
chr2R 21145070 chr2R 17537956..17538434 479..1 2395 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21650820..21651425 1083..478 3030 100 Minus
2R 25286936 2R 21651508..21651986 479..1 2365 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21652019..21652624 1083..478 3030 100 Minus
2R 25260384 2R 21652707..21653185 479..1 2365 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 07:32:04 has no hits.

AT12437.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:33:01 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17537268..17537872 479..1083 100 <- Minus
chr2R 17537957..17538434 1..478 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:02:01 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..978 64..1041 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:01:41 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..978 64..1041 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:40:59 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..978 64..1041 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:00 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..978 64..1041 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:22 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..978 64..1041 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:43:05 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:01:41 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:40:59 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..1083 1..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:00 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..1078 1..1078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:22 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 1..1083 1..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:01 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21650820..21651424 479..1083 100 <- Minus
2R 21651509..21651986 1..478 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:01 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21650820..21651424 479..1083 100 <- Minus
2R 21651509..21651986 1..478 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:33:01 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21650820..21651424 479..1083 100 <- Minus
2R 21651509..21651986 1..478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:40:59 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17538325..17538929 479..1083 100 <- Minus
arm_2R 17539014..17539491 1..478 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:27:14 Download gff for AT12437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21652019..21652623 479..1083 100 <- Minus
2R 21652708..21653185 1..478 99   Minus

AT12437.pep Sequence

Translation from 63 to 1040

> AT12437.pep
MKSIQARLNHRFRKTLAMDKPSSSNSNRMSRSTSNCRSPAIIRSPLNSEE
FQDSATAAATQQRLFWSGQRASTAGRDDKTKPDSTAAGKKKPPTTTRQSN
FTQTERRRTHRKLSPRSTRCNSVAVTALVSRENIPQTSGYRRPEDLTARC
SASHEGRKLLQERLMVRVDALFNMLFSASPFLQSFHERRKSTDLNMGVWA
RNAGGQNQRTVSMTVALQANVGPKTAKITETQTMRECSQPGQLYSIDVQS
VNADIPYADTFVVLMHFCLKATVEEHTDVLVFAEIQFLKSVWAVVKTFIE
RNAYAGLEEFCQSLYSALLIEIRKM*

AT12437.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11633-PA 381 GF11633-PA 1..381 1..325 786 45.5 Plus
Dana\GF15685-PA 1293 GF15685-PA 747..921 147..321 579 59.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20760-PA 325 GG20760-PA 1..324 1..324 1427 84 Plus
Dere\GG24446-PA 1235 GG24446-PA 729..900 147..318 555 56.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10472-PA 1099 GH10472-PA 613..784 147..318 570 57.6 Plus
Dgri\GH23042-PA 258 GH23042-PA 18..255 96..325 513 45.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PB 325 CG30284-PB 1..325 1..325 1655 100 Plus
CG30284-PA 353 CG30284-PA 1..353 1..325 1616 92.1 Plus
GramD1B-PG 804 CG34394-PG 161..469 15..321 517 38.2 Plus
GramD1B-PA 1138 CG34394-PA 596..904 15..321 517 38.2 Plus
GramD1B-PH 1206 CG34394-PH 572..880 15..321 517 38.2 Plus
GramD1B-PD 1212 CG34394-PD 670..978 15..321 517 38.2 Plus
GramD1B-PC 1239 CG34394-PC 596..904 15..321 517 38.2 Plus
GramD1B-PE 1249 CG34394-PE 606..914 15..321 517 38.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21111-PA 187 GI21111-PA 11..183 147..318 510 53.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19523-PA 1043 GL19523-PA 733..907 147..321 542 53.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15750-PA 247 GA15750-PA 61..236 150..324 645 63.6 Plus
Dpse\GA25994-PA 1173 GA25994-PA 761..932 147..318 540 54.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15703-PA 326 GM15703-PA 1..325 1..324 1617 92.9 Plus
Dsec\GM18152-PA 1234 GM18152-PA 727..901 147..321 544 54.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25181-PA 326 GD25181-PA 1..325 1..324 1575 93.8 Plus
Dsim\GD22763-PA 1203 GD22763-PA 727..898 147..318 544 55.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10381-PA 1187 GJ10381-PA 699..873 147..321 583 59.4 Plus
Dvir\GJ20960-PA 203 GJ20960-PA 24..199 150..324 545 53.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19339-PA 306 GK19339-PA 120..300 143..322 613 60.8 Plus
Dwil\GK18353-PA 1207 GK18353-PA 708..882 147..321 574 57.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13691-PA 332 GE13691-PA 1..331 1..324 1379 78.9 Plus
Dyak\GE14894-PA 1236 GE14894-PA 728..899 147..318 549 55.8 Plus

AT12437.hyp Sequence

Translation from 63 to 1040

> AT12437.hyp
MKSIQARLNHRFRKTLAMDKPSSSNSNRMSRSTSNCRSPAIIRSPLNSEE
FQDSATAAATQQRLFWSGQRASTAGRDDKTKPDSTAAGKKKPPTTTRQSN
FTQTERRRTHRKLSPRSTRCNSVAVTALVSRENIPQTSGYRRPEDLTARC
SASHEGRKLLQERLMVRVDALFNMLFSASPFLQSFHERRKSTDLNMGVWA
RNAGGQNQRTVSMTVALQANVGPKTAKITETQTMRECSQPGQLYSIDVQS
VNADIPYADTFVVLMHFCLKATVEEHTDVLVFAEIQFLKSVWAVVKTFIE
RNAYAGLEEFCQSLYSALLIEIRKM*

AT12437.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-PB 325 CG30284-PB 1..325 1..325 1655 100 Plus
CG30284-PA 353 CG30284-PA 1..353 1..325 1616 92.1 Plus
CG34394-PG 804 CG34394-PG 161..469 15..321 517 38.2 Plus
CG34394-PA 1138 CG34394-PA 596..904 15..321 517 38.2 Plus
CG34394-PH 1206 CG34394-PH 572..880 15..321 517 38.2 Plus