BDGP Sequence Production Resources |
Search the DGRC for AT12489
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 124 |
Well: | 89 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG5180-RB |
Protein status: | AT12489.pep: gold |
Preliminary Size: | 1334 |
Sequenced Size: | 1543 |
Gene | Date | Evidence |
---|---|---|
CG5180 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5180 | 2002-02-22 | Blastp of sequenced clone |
CG5180 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5180 | 2008-04-29 | Release 5.5 accounting |
CG5180 | 2008-08-15 | Release 5.9 accounting |
CG5180 | 2008-12-18 | 5.12 accounting |
1543 bp (1543 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089316
> AT12489.complete GGCATACAAGTTCGTTTAAACAAAATATTAAACATAAATAAACATTAAAA TATATTATTAAACAAAATATATTCTTGACTTGCAATAGATATGCCGTATC ACTCATAAATGCAATACAAAGGGCTCGATACCATCTCGACCGCGATGATT TGTTTGGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAACTTCACGCG AGACGCAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTGAGAAAACCC CAAATAAAACGCGAGTGAAAGGGACCATGAACTTAGACCTGCGTTCGTAC TCACGCCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGAGGAGGAGTG CCTCTGGCAGCCCAAGCACAACGACTACAGCAATCACACAGCCCGTAACA AGTCCTACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAGCCCAATCCG GACAGGGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTCCGCTTTTCG GCGGGAATTCCGCAAGACGAGTACCAAAGGCGACTACGCAACGCGTTTGT GGTACTACGACAAGCTGCTTTTCATCGCTGACCACAAGCCCAAGCGCCAC GAACTCGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTTCGACGACGA GGAGTCAATGGAGTTCGAGGACGACTCACATCACACGGGCACTCAGTCTC AGCACATGGAGTCCATAATACCCACGTCCCCGGACGATGTGGAAGAAGTC GCGGCGACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGCCACTCTGAG CACCATTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTCAAGAGCGAGG AGCACCAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCAAGCACACCAGCAA ATGGTAGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGCGGCGGCTCA GGGACATGCCGTGAAGGTCTTAGAGATCACCTCCCTAGACTCCAACTCCC AGCGCGAGATACAACAAGCGGTCAATCATCTGGAGCACCACCAGCAGCAG CTCCACCTGCAGCAGACGAATGGCCAACATCAGGGCGTTCCCACCATCCA GATAGGCCGCGATCACTATCAGCCATTGTTTGGCAATGCCGGCACCACTG CCTATACCACCACAGCGGCTACGAGCACATCGCACCGGCAAGACGACGAG TACGATGCCATTGGCGTGAATGTGGCGAGCAAACTGCGCTCCATCAACCC GACGCAGCGGATCGTGGCCGAGAAACTGATCAGCGACGTTCTATTCAACG CACAGCTGGGCAACCTCACCGTTCACTCGGCCCTCACGCAGTAATCTCTC TTGTCCCCCTAGACTAAGTATGTGTAGTCTCTGGCTTTATATCTCCATTT TGTCTGTGTCCCAACCTGCAGCCCGGCCAACATGTGTCGCCCGGGCAGCA GCCGATTGTACCATACAGTTTGCATGTAGTTTTAATTATTCTATACAATA AATAGATTGTATGTCTTAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16382562..16383111 | 469..1018 | 2750 | 100 | Plus |
chr3R | 27901430 | chr3R | 16383175..16383674 | 1018..1517 | 2500 | 100 | Plus |
chr3R | 27901430 | chr3R | 16382157..16382506 | 122..471 | 1750 | 100 | Plus |
chr3R | 27901430 | chr3R | 16381844..16381966 | 1..123 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20558648..20559197 | 469..1018 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 20559261..20559762 | 1018..1519 | 2510 | 100 | Plus |
3R | 32079331 | 3R | 20558243..20558592 | 122..471 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 20557930..20558052 | 1..123 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20299479..20300028 | 469..1018 | 2750 | 100 | Plus |
3R | 31820162 | 3R | 20300092..20300593 | 1018..1519 | 2510 | 100 | Plus |
3R | 31820162 | 3R | 20299074..20299423 | 122..471 | 1750 | 100 | Plus |
3R | 31820162 | 3R | 20298761..20298883 | 1..123 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1490..1591 | 972..1078 | 118 | 59.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16381917..16381965 | 74..122 | 100 | -> | Plus |
chr3R | 16382158..16382505 | 123..470 | 100 | -> | Plus |
chr3R | 16382564..16383110 | 471..1017 | 100 | -> | Plus |
chr3R | 16383175..16383674 | 1018..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RA | 1..1236 | 109..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RA | 1..1236 | 109..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RB | 1..1068 | 277..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RA | 1..1236 | 109..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RB | 1..1068 | 277..1344 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RB | 1..1517 | 1..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RB | 1..1517 | 1..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RC | 1..1517 | 1..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RB | 1..1517 | 1..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5180-RC | 1..1517 | 1..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20557930..20558051 | 1..122 | 100 | -> | Plus |
3R | 20558244..20558591 | 123..470 | 100 | -> | Plus |
3R | 20558650..20559196 | 471..1017 | 100 | -> | Plus |
3R | 20559261..20559760 | 1018..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20557930..20558051 | 1..122 | 100 | -> | Plus |
3R | 20558244..20558591 | 123..470 | 100 | -> | Plus |
3R | 20558650..20559196 | 471..1017 | 100 | -> | Plus |
3R | 20559261..20559760 | 1018..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20557930..20558051 | 1..122 | 100 | -> | Plus |
3R | 20558244..20558591 | 123..470 | 100 | -> | Plus |
3R | 20558650..20559196 | 471..1017 | 100 | -> | Plus |
3R | 20559261..20559760 | 1018..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16383652..16383773 | 1..122 | 100 | -> | Plus |
arm_3R | 16383966..16384313 | 123..470 | 100 | -> | Plus |
arm_3R | 16384372..16384918 | 471..1017 | 100 | -> | Plus |
arm_3R | 16384983..16385482 | 1018..1517 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20299075..20299422 | 123..470 | 100 | -> | Plus |
3R | 20299481..20300027 | 471..1017 | 100 | -> | Plus |
3R | 20300092..20300591 | 1018..1517 | 100 | Plus | |
3R | 20298761..20298882 | 1..122 | 100 | -> | Plus |
Translation from 108 to 1343
> AT12489.pep MQYKGLDTISTAMICLGWQRPDVCGAANFTRDAAKTKNTKLKLIEKTPNK TRVKGTMNLDLRSYSRHWLTEFIEQYQEEECLWQPKHNDYSNHTARNKSY DRLVEKLKEVEPNPDRAMVVRKINSLRSAFRREFRKTSTKGDYATRLWYY DKLLFIADHKPKRHELGSKPKRELHISFDDEESMEFEDDSHHTGTQSQHM ESIIPTSPDDVEEVAATANNVVVSSQGATLSTISVTPAECVTLVKSEEHQ AAEAAAAAAQAHQQMVAHAAAQTSIAAAAAQGHAVKVLEITSLDSNSQRE IQQAVNHLEHHQQQLHLQQTNGQHQGVPTIQIGRDHYQPLFGNAGTTAYT TTAATSTSHRQDDEYDAIGVNVASKLRSINPTQRIVAEKLISDVLFNAQL GNLTVHSALTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23031-PA | 351 | GF23031-PA | 1..351 | 57..411 | 1355 | 81.2 | Plus |
Dana\GF12893-PA | 370 | GF12893-PA | 3..356 | 68..409 | 209 | 28.1 | Plus |
Dana\GF25258-PA | 238 | GF25258-PA | 1..186 | 61..220 | 197 | 30.1 | Plus |
Dana\GF21386-PA | 511 | GF21386-PA | 179..264 | 72..156 | 157 | 34.9 | Plus |
Dana\GF24078-PA | 468 | GF24078-PA | 14..111 | 66..156 | 151 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23945-PA | 355 | GG23945-PA | 1..355 | 57..411 | 1451 | 94.9 | Plus |
Dere\GG22924-PA | 366 | GG22924-PA | 3..349 | 68..406 | 185 | 24.5 | Plus |
Dere\GG14648-PA | 288 | GG14648-PA | 14..111 | 66..156 | 151 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14156-PA | 377 | GH14156-PA | 8..377 | 60..411 | 1279 | 75.3 | Plus |
Dgri\GH16644-PA | 261 | GH16644-PA | 1..112 | 61..168 | 194 | 36.6 | Plus |
Dgri\GH16042-PA | 308 | GH16042-PA | 13..118 | 66..164 | 172 | 33 | Plus |
Dgri\GH20173-PA | 360 | GH20173-PA | 3..344 | 68..411 | 165 | 21.4 | Plus |
Dgri\GH12134-PA | 398 | GH12134-PA | 14..109 | 71..158 | 153 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5180-PC | 355 | CG5180-PC | 1..355 | 57..411 | 1829 | 100 | Plus |
CG5180-PB | 355 | CG5180-PB | 1..355 | 57..411 | 1829 | 100 | Plus |
CG3163-PA | 368 | CG3163-PA | 3..351 | 68..406 | 215 | 22.9 | Plus |
CG3386-PD | 288 | CG3386-PD | 14..147 | 66..188 | 161 | 29.1 | Plus |
CG3386-PC | 288 | CG3386-PC | 14..147 | 66..188 | 161 | 29.1 | Plus |
CG3386-PB | 288 | CG3386-PB | 14..147 | 66..188 | 161 | 29.1 | Plus |
CG3386-PA | 288 | CG3386-PA | 14..147 | 66..188 | 161 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22237-PA | 359 | GI22237-PA | 4..359 | 55..411 | 1324 | 74.2 | Plus |
Dmoj\GI11601-PA | 248 | GI11601-PA | 1..99 | 61..156 | 216 | 41.4 | Plus |
Dmoj\GI12053-PA | 234 | GI12053-PA | 12..152 | 71..207 | 172 | 29.3 | Plus |
Dmoj\GI12306-PA | 295 | GI12306-PA | 13..110 | 66..156 | 158 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13562-PA | 347 | GL13562-PA | 1..347 | 57..411 | 1421 | 81.7 | Plus |
Dper\GL13143-PA | 543 | GL13143-PA | 187..533 | 67..410 | 197 | 22.7 | Plus |
Dper\GL20841-PA | 792 | GL20841-PA | 508..605 | 66..156 | 169 | 35.7 | Plus |
Dper\GL20840-PA | 298 | GL20840-PA | 14..111 | 66..156 | 165 | 35.7 | Plus |
Dper\GL13143-PA | 543 | GL13143-PA | 45..144 | 69..171 | 155 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18714-PA | 347 | GA18714-PA | 1..347 | 57..411 | 1421 | 81.7 | Plus |
Dpse\GA23414-PA | 292 | GA23414-PA | 1..100 | 61..156 | 192 | 39 | Plus |
Dpse\GA17842-PA | 543 | GA17842-PA | 187..533 | 67..410 | 190 | 24.1 | Plus |
Dpse\GA17418-PA | 298 | GA17418-PA | 14..111 | 66..156 | 165 | 35.7 | Plus |
Dpse\GA17842-PA | 543 | GA17842-PA | 45..144 | 69..171 | 162 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23117-PA | 411 | GM23117-PA | 1..411 | 1..411 | 1752 | 93.9 | Plus |
Dsec\GM18291-PA | 368 | GM18291-PA | 3..354 | 68..409 | 187 | 24.4 | Plus |
Dsec\GM14263-PA | 288 | GM14263-PA | 14..147 | 66..188 | 153 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19356-PA | 411 | GD19356-PA | 1..411 | 1..411 | 1777 | 95.1 | Plus |
Dsim\GD24799-PA | 148 | GD24799-PA | 16..104 | 69..156 | 147 | 38.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23041-PA | 358 | GJ23041-PA | 8..358 | 60..411 | 1307 | 79.8 | Plus |
Dvir\GJ11280-PA | 271 | GJ11280-PA | 1..99 | 61..156 | 211 | 40.4 | Plus |
Dvir\GJ13242-PA | 295 | GJ13242-PA | 13..110 | 66..156 | 171 | 36.7 | Plus |
Dvir\GJ20438-PA | 358 | GJ20438-PA | 3..342 | 68..411 | 171 | 23.1 | Plus |
Dvir\GJ13325-PA | 258 | GJ13325-PA | 10..105 | 68..156 | 164 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22452-PA | 343 | GK22452-PA | 2..343 | 57..411 | 1313 | 76.9 | Plus |
Dwil\GK16686-PA | 366 | GK16686-PA | 16..126 | 66..163 | 160 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25667-PA | 355 | GE25667-PA | 1..355 | 57..411 | 1513 | 95.8 | Plus |
Dyak\GE14362-PA | 367 | GE14362-PA | 3..350 | 68..406 | 181 | 24.7 | Plus |
Dyak\GE21008-PA | 288 | GE21008-PA | 14..111 | 66..156 | 151 | 33.7 | Plus |
Translation from 108 to 1343
> AT12489.hyp MQYKGLDTISTAMICLGWQRPDVCGAANFTRDAAKTKNTKLKLIEKTPNK TRVKGTMNLDLRSYSRHWLTEFIEQYQEEECLWQPKHNDYSNHTARNKSY DRLVEKLKEVEPNPDRAMVVRKINSLRSAFRREFRKTSTKGDYATRLWYY DKLLFIADHKPKRHELGSKPKRELHISFDDEESMEFEDDSHHTGTQSQHM ESIIPTSPDDVEEVAATANNVVVSSQGATLSTISVTPAECVTLVKSEEHQ AAEAAAAAAQAHQQMVAHAAAQTSIAAAAAQGHAVKVLEITSLDSNSQRE IQQAVNHLEHHQQQLHLQQTNGQHQGVPTIQIGRDHYQPLFGNAGTTAYT TTAATSTSHRQDDEYDAIGVNVASKLRSINPTQRIVAEKLISDVLFNAQL GNLTVHSALTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5180-PC | 355 | CG5180-PC | 1..355 | 57..411 | 1829 | 100 | Plus |
CG5180-PB | 355 | CG5180-PB | 1..355 | 57..411 | 1829 | 100 | Plus |
CG3163-PA | 368 | CG3163-PA | 3..351 | 68..406 | 215 | 22.9 | Plus |
CG3386-PD | 288 | CG3386-PD | 14..147 | 66..188 | 161 | 29.1 | Plus |
CG3386-PC | 288 | CG3386-PC | 14..147 | 66..188 | 161 | 29.1 | Plus |