Clone AT12527 Report

Search the DGRC for AT12527

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:125
Well:27
Vector:pOTB7
Associated Gene/TranscriptCG18675-RA
Protein status:AT12527.pep: gold
Preliminary Size:762
Sequenced Size:1670

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18675 2002-01-01 Sim4 clustering to Release 2
CG18675 2002-02-22 Blastp of sequenced clone
CG18675 2008-04-29 Release 5.5 accounting
CG18675 2008-08-15 Release 5.9 accounting
tipE 2008-08-15 Release 5.9 accounting
CG18675 2008-12-18 5.12 accounting
tipE 2008-12-18 5.12 accounting

Clone Sequence Records

AT12527.complete Sequence

1670 bp (1670 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089317

> AT12527.complete
AGTTGTTTGCCATTCCAGCTGTCGGCTTTTGTGACATTAGCAAATTGCTA
TCCAGTCGATCGACACTTGATTGCTCTTGTGACTATATTTTCTGTGCGAA
ATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGCTTATCTTCCTCTATGA
GACAAGCGTTAAGGAGAAGACCGATACTGTGCTTCGCGAGCTTGTGGCTC
TGCACAATGGTCAACTGAAGATTCAGCGTGTCTGCATGGAGATTGAGGAG
CTGGCCGAACATGGCACCATGGTGCCGCCTGAAATGATTGGCCTCAACGA
GGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTCTGGGCGGATAAGTGCA
TCCCGTCTGGTGGTTTCACTATCAACAAGGATCCGCTCCTTCGCCGTAAC
GGACAGCAGCCAACTGAGGCGATGCAAAAGGTCCTTGCAGGTGCCATGAA
CGACGCCAAGGCTATGGTGGATCGGCGCTTAGCTAAATCCTCAAAGACCT
TGACCCCAAAGATCGTTGAGGAGGCGTTGAACCTCCTGCGTGGTGGTGTC
ACTATTGTATATCCCATGCAATTGCCGCCCCACGACTCCATACGCATGGA
GTTCACCAATACCGAGGATCTGACTGGCACCCAGGCCTCCAAGGAGGTCA
TCGAACCGTCCAAGGCTCAGTTCTGGTTTGCAGGACACCAGATGCTGATG
GGGAAGCTAATGAGCGACTATTTGGGTCACAACGACAAAACCAAGGTGGT
CGTGAAGCTGAATCAAATTGGTGAAGGACCACCGGGACGCGAAGCCGTGA
TCTCCGATCCCTTGCGTCGCCAGATGATGGCCGAGGCCTATCGCCGCCAG
GAGGAACTCAAGAAACTTGAGCAAGACGATGACGACGAGTATCTCAACTC
CTCCTGGGCCGACAGCGGCAGTCTGAAACGTCAGGCGCATGGTCTGGAAA
ATGTTAGATTCCGATTCAGAAAATGAGCCGCTACTGGACTCGTAGACCGC
CGAGCGGTCAGCCACGGACCACGGAGCAGGCGGAGATCACCGGAGCGGAG
ACCCAACCCGAAAAAGAACTCATGAGGCAACCGTAAAGCGATAAACCCCA
AGTATTTCTACCCGAAACAATCGACAACAACGCAGCGAATGCGACCGAAC
CTGAATACCTTCAGAGCTGTTAGCGGCACCTAATGAACTATGATAGATTA
TATTTACCTTATGAACTAGCTACTCGGATTCACACCTACACTCACACAAA
CACTCACCCACATTAAGCACGCTAGATAGCCGGAGTAACTCCGGACTGCC
ACACCCACTCAAAATTGCAATGCACGGGCATTATAGTATGTGCACAGTAT
CTGATATCTGGAGGATCTTAGGCGATTGGTACAAATACAATAAAAACATA
GGCCGCATGGACTCGAGCATGGAGTGCTATTCATATACCTAGAGGAAAAA
CTATAATACTTATACACGCATATACAAATATTTACTTGAATTATTTTTCT
ATTCGCAACAATCGTCGTCGTCTCGAGGCAGAAACACAGATAAACTCCAC
CAACTCCACTACCCCACTACCCATTGCCCAACATCCACAATTCAAAACCC
AAATTCCAAATAGAGCAAATAAAAGCAAAAGAGAAACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

AT12527.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-RA 1639 CG18675-RA 1..1639 1..1637 8035 99.4 Plus
tipE-RA 4084 tipE-RA 2487..3266 862..1639 3800 99.3 Plus
tipE.a 3902 tipE.a 2305..3084 862..1639 3800 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4191576..4192354 861..1637 3785 99.4 Plus
chr3L 24539361 chr3L 4173239..4173713 1..475 2330 99.4 Plus
chr3L 24539361 chr3L 4173779..4174051 475..747 1365 100 Plus
chr3L 24539361 chr3L 4174110..4174228 744..862 580 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4192190..4192970 861..1639 3795 99.4 Plus
3L 28110227 3L 4173853..4174327 1..475 2330 99.4 Plus
3L 28110227 3L 4174393..4174665 475..747 1365 100 Plus
3L 28110227 3L 4174724..4174842 744..862 580 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4192190..4192970 861..1639 3805 99.3 Plus
3L 28103327 3L 4173853..4174327 1..475 2330 99.3 Plus
3L 28103327 3L 4174393..4174665 475..747 1365 100 Plus
3L 28103327 3L 4174724..4174842 744..862 580 99.1 Plus
3R 31820162 3R 18347402..18347455 1670..1617 210 92.5 Minus
2R 25260384 2R 513554..513607 1670..1617 210 92.5 Minus
3R 31820162 3R 13926350..13926403 1617..1670 195 90.7 Plus
Blast to na_te.dros performed 2019-03-16 12:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 654..763 1529..1636 130 62.5 Plus

AT12527.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:29 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4173239..4173713 1..475 99 -> Plus
chr3L 4173780..4174049 476..745 100 -> Plus
chr3L 4174112..4174228 746..862 99 -> Plus
chr3L 4191578..4192354 863..1637 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:57:14 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..876 101..976 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:42 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..876 101..976 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:11:37 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..876 101..976 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:49 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..876 101..976 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:38 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..876 101..976 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:13 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..1639 1..1637 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:42 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..1639 1..1637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:11:37 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..1608 32..1637 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:50 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..1639 1..1637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:38 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
CG18675-RA 1..1608 32..1637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:29 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4173853..4174327 1..475 99 -> Plus
3L 4174394..4174663 476..745 100 -> Plus
3L 4174726..4174842 746..862 99 -> Plus
3L 4192192..4192968 863..1637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:29 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4173853..4174327 1..475 99 -> Plus
3L 4174394..4174663 476..745 100 -> Plus
3L 4174726..4174842 746..862 99 -> Plus
3L 4192192..4192968 863..1637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:29 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4173853..4174327 1..475 99 -> Plus
3L 4174394..4174663 476..745 100 -> Plus
3L 4174726..4174842 746..862 99 -> Plus
3L 4192192..4192968 863..1637 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:11:37 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4173853..4174327 1..475 99 -> Plus
arm_3L 4174394..4174663 476..745 100 -> Plus
arm_3L 4174726..4174842 746..862 99 -> Plus
arm_3L 4192192..4192968 863..1637 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:45:11 Download gff for AT12527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4174726..4174842 746..862 99 -> Plus
3L 4173853..4174327 1..475 99 -> Plus
3L 4174394..4174663 476..745 100 -> Plus
3L 4192192..4192968 863..1637 99   Plus

AT12527.pep Sequence

Translation from 100 to 975

> AT12527.pep
MVLLQVKRGDELIFLYETSVKEKTDTVLRELVALHNGQLKIQRVCMEIEE
LAEHGTMVPPEMIGLNEEQREELKLKDVWADKCIPSGGFTINKDPLLRRN
GQQPTEAMQKVLAGAMNDAKAMVDRRLAKSSKTLTPKIVEEALNLLRGGV
TIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLM
GKLMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQ
EELKKLEQDDDDEYLNSSWADSGSLKRQAHGLENVRFRFRK*

AT12527.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10560-PA 270 GF10560-PA 1..254 1..254 1136 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15200-PA 259 GG15200-PA 1..254 1..254 1263 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15929-PA 258 GH15929-PA 1..254 1..254 1015 72.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-PA 291 CG18675-PA 1..291 1..291 1495 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16578-PA 259 GI16578-PA 1..254 1..254 1018 73.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12832-PA 258 GL12832-PA 1..254 1..254 1123 79.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15047-PA 261 GA15047-PA 1..254 1..254 1119 79.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14631-PA 264 GM14631-PA 1..255 1..255 1320 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13820-PA 255 GD13820-PA 1..254 1..254 1312 96.9 Plus
Dsim\GD13821-PA 434 GD13821-PA 397..434 254..291 196 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12830-PA 256 GJ12830-PA 1..254 1..254 1067 76 Plus
Dvir\GJ12831-PA 485 GJ12831-PA 448..485 254..291 190 89.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12707-PA 265 GK12707-PA 1..257 1..257 1077 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21419-PA 256 GE21419-PA 1..254 1..254 1281 94.5 Plus

AT12527.hyp Sequence

Translation from 100 to 975

> AT12527.hyp
MVLLQVKRGDELIFLYETSVKEKTDTVLRELVALHNGQLKIQRVCMEIEE
LAEHGTMVPPEMIGLNEEQREELKLKDVWADKCIPSGGFTINKDPLLRRN
GQQPTEAMQKVLAGAMNDAKAMVDRRLAKSSKTLTPKIVEEALNLLRGGV
TIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLM
GKLMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQ
EELKKLEQDDDDEYLNSSWADSGSLKRQAHGLENVRFRFRK*

AT12527.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18675-PA 291 CG18675-PA 1..291 1..291 1495 100 Plus