Clone AT12538 Report

Search the DGRC for AT12538

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:125
Well:38
Vector:pOTB7
Associated Gene/Transcriptkdn-RB
Protein status:AT12538.pep: gold
Preliminary Size:1632
Sequenced Size:1963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3861 2002-01-01 Sim4 clustering to Release 2
CG3861 2002-01-18 Blastp of sequenced clone
CG3861 2003-01-01 Sim4 clustering to Release 3
kdn 2008-04-29 Release 5.5 accounting
kdn 2008-08-15 Release 5.9 accounting
kdn 2008-12-18 5.12 accounting

Clone Sequence Records

AT12538.complete Sequence

1963 bp (1963 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089318

> AT12538.complete
AATAAATTTTTGTATCCTACATCACTAACTTTCACATTCCCAAAAACAAG
AGAAAAAGCGAACTAGAAACTTCGAAATATCGTATATATTTACAGCTAAA
AGTAGTAATGTTCGTACGCCGTTTCGGAAATGGCTCTTTGGGCCATCATT
TTGCCTTTCAACGACGTTATTTGGCTAAAAATTCTATGTGGGACTCGAAG
TCCATTGGGACTCCAAGTTCATTCCGAATGCGTTCCAAAAAGGATAACGT
GACTGGCAATCTCAAGGAGCAGCAACAATCGGCGACTCCGGAAACCTTGA
ACATGCCTGATATGCAGGATGCCCAAAAACTGCCAAATGTGGGAGCCTAT
GTTCGCATGATCGCCGCCGATGGCAAGAGCCTGCGCGACGTGCTGGCCGC
CAAGGTGCCCCAGGAGCAGGAGCGCGTAAAGAACTTCCGCAAGCAGCATG
GCGCCACCAAGATGGGCGAGACGACCATCGACATGATGTACGGCGGCATG
CGCGGCATCAAGGCCCTGGTCACCGAGACCTCGGTGCTGGATGCTGACGA
GGGTATCCGCTTCCGCGGCCTCTCCATTCCCGAGTGCCAAAAGGTTCTGC
CAGCCGCCGATGGCGGCACTGAGCCCCTGCCCGAGGGTCTCTTCTGGCTG
CTGTTGACCGGCGAGGTGCCCACCAAGTCCCAGGTGCAGCAGCTGTCCCG
CGAATGGGCCGAGCGCGCCGCCCTGCCCCAGCACGTGGTCACCATGTTGA
ACAACATGCCCACCACCCTGCACCCGATGTCGCAGTTTGCTGCCGCCGTC
ACTGCGCTGAATCACGACAGCAAATTCGCCAAGGCATACTCGGATGGTGT
GCACAAGAGCAAGTACTGGGAGTACGTCTACGAGGACAGCATGGACCTGA
TCGCCAAGCTCCCAGTGGTGGCGGCCACCATCTACTGCAACACCTATCGC
GGCGGCAAGGGCTCCCGTTCGATTGACTCCAGCCTGGATTGGTCGGCGAA
CTTTGTGAAGATGCTCGGCTACGACAACGCCCCCTTCACCGAGCTGATGC
GTCTCTATCTGACCATCCACAGTGACCACGAGGGTGGCAACGTGTCTGCC
CACACCGTTCACTTGGTGGGCTCCGCCCTCAGCGATCCCTACCTCTCCTT
TGCCGCCGGTCTGAACGGTCTGGCTGGTCCCCTGCACGGACTGGCCAACC
AGGAGGTGCTCGTGTGGCTGCGCAAGCTGCAGAAGGAGGCCGGCAACAAC
CCGTCGGAGGAGCAGCTCAAGGAGTACATCTGGAAGACCCTCAAGTCCGG
ACAGGTGGTTCCCGGCTACGGACACGCCGTGCTCCGCAAGACCGATCCCC
GCTACACCTGCCAGCGTGAGTTCGCGCTGAAGCACCTGCCCGAGGACGAG
ACGTTCCAGCTGGTGTCGAAGATCTACAAGGTGGTGCCACCAATTCTGAC
CGAGACCGGCAAGGTGAAGAACCCCTGGCCCAATGTAGATGCCCATTCCG
GTGTGCTGCTGCAGTACTACGGCATGAAGGAGATGAACTATTACACCGTG
TTGTTCGGCGTTTCCCGTGCCCTCGGCGTGCTGGCCTCCCTCGTCTGGGA
TCGCGCCCTCGGCCTGCCCATCGAGCGCCCCAAGTCATTCTCCACCGATC
TGCTGGTCAAGATGGTCCAGAAGTAAGCAACTGGAGCAGGAGGAGCGGGA
GGAGCTGGAGTTCAACCTTTTGTAGCCGGAGGACGATGGACGTAAAATGC
AGAAGCTGTAGATTGTAATTGACGAGGGAAGAGGCAGAAAGAGAGAGATA
GAGAGAGAGAGAATCGATCGGATTGGATTAGGATGAGATGGGATTGGATT
GGATTGGATGGATATCGATATGACGACGCTGATATTGAGGGAGTTGGAGA
TGTGTAGTTGAGGAGAAGAGCAACCAAATACGAACCAATAGGACAAAAAA
AAAAAAAAAAAAA

AT12538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-RB 2636 kdn-RB 1..1946 1..1949 9525 99.3 Plus
kdn-RA 2626 kdn-RA 250..1869 327..1949 7910 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6251077..6252060 323..1306 4875 99.7 Plus
chrX 22417052 chrX 6252166..6252810 1302..1944 3145 99.5 Plus
chrX 22417052 chrX 6242825..6243150 1..326 1510 97.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6358898..6359881 323..1306 4875 99.7 Plus
X 23542271 X 6359989..6360633 1302..1949 3045 98.6 Plus
X 23542271 X 6350629..6350954 1..326 1615 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6366996..6367979 323..1306 4875 99.6 Plus
X 23527363 X 6368087..6368731 1302..1949 3065 98.6 Plus
X 23527363 X 6358727..6359052 1..326 1615 99.6 Plus
Blast to na_te.dros performed 2019-03-16 09:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1569..1690 136..260 141 61.7 Plus

AT12538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:07:33 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6242825..6243150 1..326 97 -> Plus
chrX 6251081..6252058 327..1304 99 -> Plus
chrX 6252169..6252649 1305..1785 99 == Plus
chrX 6252726..6252810 1860..1944 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:02:19 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1569 108..1676 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:48:02 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1569 108..1676 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:44 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1569 108..1676 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:37 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1569 108..1676 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:46 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1569 108..1676 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:12:05 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1941 1..1944 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:48:02 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1941 1..1944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:44 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1941 1..1944 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:38 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1941 1..1944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:46 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
kdn-RB 1..1941 1..1944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:33 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
X 6350629..6350954 1..326 99 -> Plus
X 6358902..6359879 327..1304 99 -> Plus
X 6359992..6360628 1305..1944 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:33 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
X 6350629..6350954 1..326 99 -> Plus
X 6358902..6359879 327..1304 99 -> Plus
X 6359992..6360628 1305..1944 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:33 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
X 6350629..6350954 1..326 99 -> Plus
X 6358902..6359879 327..1304 99 -> Plus
X 6359992..6360628 1305..1944 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:44 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6244662..6244987 1..326 99 -> Plus
arm_X 6252935..6253912 327..1304 99 -> Plus
arm_X 6254025..6254661 1305..1944 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:28 Download gff for AT12538.complete
Subject Subject Range Query Range Percent Splice Strand
X 6358727..6359052 1..326 99 -> Plus
X 6367000..6367977 327..1304 99 -> Plus
X 6368090..6368726 1305..1944 98   Plus

AT12538.pep Sequence

Translation from 107 to 1675

> AT12538.pep
MFVRRFGNGSLGHHFAFQRRYLAKNSMWDSKSIGTPSSFRMRSKKDNVTG
NLKEQQQSATPETLNMPDMQDAQKLPNVGAYVRMIAADGKSLRDVLAAKV
PQEQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGI
RFRGLSIPECQKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREW
AERAALPQHVVTMLNNMPTTLHPMSQFAAAVTALNHDSKFAKAYSDGVHK
SKYWEYVYEDSMDLIAKLPVVAATIYCNTYRGGKGSRSIDSSLDWSANFV
KMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA
GLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKSGQV
VPGYGHAVLRKTDPRYTCQREFALKHLPEDETFQLVSKIYKVVPPILTET
GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRA
LGLPIERPKSFSTDLLVKMVQK*

AT12538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19352-PA 535 GF19352-PA 15..535 17..522 2453 88.9 Plus
Dana\GF17747-PA 473 GF17747-PA 24..460 86..521 1284 52.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19590-PA 464 GG19590-PA 11..464 69..522 2416 98.5 Plus
Dere\GG17162-PA 483 GG17162-PA 46..469 100..522 1280 52.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24061-PA 464 GH24061-PA 13..464 71..522 2274 92.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-PB 522 CG3861-PB 1..522 1..522 2731 100 Plus
kdn-PA 464 CG3861-PA 11..464 69..522 2359 99.3 Plus
CG14740-PA 478 CG14740-PA 30..464 89..522 1248 52.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15188-PA 464 GI15188-PA 13..464 71..522 2269 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26854-PA 519 GL26854-PA 1..519 1..522 2382 86.4 Plus
Dper\GL21578-PA 486 GL21578-PA 34..468 87..520 1371 56.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17736-PA 519 GA17736-PA 1..519 1..522 2385 86.2 Plus
Dpse\GA26341-PB 471 GA26341-PB 20..456 87..522 1374 55.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26044-PA 478 GM26044-PA 30..464 89..522 1303 52.4 Plus
Dsec\GM12487-PA 209 GM12487-PA 1..209 314..522 1117 100 Plus
Dsec\GM12486-PA 307 GM12486-PA 1..104 1..97 390 73.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20606-PA 498 GD20606-PA 30..484 89..522 1272 50.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17070-PA 464 GJ17070-PA 13..464 71..522 2205 88.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16526-PA 464 GK16526-PA 11..464 69..522 2350 95.4 Plus
Dwil\GK11572-PA 486 GK11572-PA 37..472 87..521 1351 53.7 Plus
Dwil\GK23493-PA 319 GK23493-PA 37..313 87..362 790 49.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16750-PA 532 GE16750-PA 1..532 1..522 2640 92.9 Plus
Dyak\GE24552-PA 475 GE24552-PA 39..461 100..521 1280 53.4 Plus

AT12538.hyp Sequence

Translation from 107 to 1675

> AT12538.hyp
MFVRRFGNGSLGHHFAFQRRYLAKNSMWDSKSIGTPSSFRMRSKKDNVTG
NLKEQQQSATPETLNMPDMQDAQKLPNVGAYVRMIAADGKSLRDVLAAKV
PQEQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGI
RFRGLSIPECQKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREW
AERAALPQHVVTMLNNMPTTLHPMSQFAAAVTALNHDSKFAKAYSDGVHK
SKYWEYVYEDSMDLIAKLPVVAATIYCNTYRGGKGSRSIDSSLDWSANFV
KMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA
GLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKSGQV
VPGYGHAVLRKTDPRYTCQREFALKHLPEDETFQLVSKIYKVVPPILTET
GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRA
LGLPIERPKSFSTDLLVKMVQK*

AT12538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
kdn-PB 522 CG3861-PB 1..522 1..522 2731 100 Plus
kdn-PA 464 CG3861-PA 11..464 69..522 2359 99.3 Plus
CG14740-PA 478 CG14740-PA 30..464 89..522 1248 52.6 Plus