BDGP Sequence Production Resources |
Search the DGRC for AT12538
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 125 |
Well: | 38 |
Vector: | pOTB7 |
Associated Gene/Transcript | kdn-RB |
Protein status: | AT12538.pep: gold |
Preliminary Size: | 1632 |
Sequenced Size: | 1963 |
Gene | Date | Evidence |
---|---|---|
CG3861 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3861 | 2002-01-18 | Blastp of sequenced clone |
CG3861 | 2003-01-01 | Sim4 clustering to Release 3 |
kdn | 2008-04-29 | Release 5.5 accounting |
kdn | 2008-08-15 | Release 5.9 accounting |
kdn | 2008-12-18 | 5.12 accounting |
1963 bp (1963 high quality bases) assembled on 2002-01-18
GenBank Submission: AY089318
> AT12538.complete AATAAATTTTTGTATCCTACATCACTAACTTTCACATTCCCAAAAACAAG AGAAAAAGCGAACTAGAAACTTCGAAATATCGTATATATTTACAGCTAAA AGTAGTAATGTTCGTACGCCGTTTCGGAAATGGCTCTTTGGGCCATCATT TTGCCTTTCAACGACGTTATTTGGCTAAAAATTCTATGTGGGACTCGAAG TCCATTGGGACTCCAAGTTCATTCCGAATGCGTTCCAAAAAGGATAACGT GACTGGCAATCTCAAGGAGCAGCAACAATCGGCGACTCCGGAAACCTTGA ACATGCCTGATATGCAGGATGCCCAAAAACTGCCAAATGTGGGAGCCTAT GTTCGCATGATCGCCGCCGATGGCAAGAGCCTGCGCGACGTGCTGGCCGC CAAGGTGCCCCAGGAGCAGGAGCGCGTAAAGAACTTCCGCAAGCAGCATG GCGCCACCAAGATGGGCGAGACGACCATCGACATGATGTACGGCGGCATG CGCGGCATCAAGGCCCTGGTCACCGAGACCTCGGTGCTGGATGCTGACGA GGGTATCCGCTTCCGCGGCCTCTCCATTCCCGAGTGCCAAAAGGTTCTGC CAGCCGCCGATGGCGGCACTGAGCCCCTGCCCGAGGGTCTCTTCTGGCTG CTGTTGACCGGCGAGGTGCCCACCAAGTCCCAGGTGCAGCAGCTGTCCCG CGAATGGGCCGAGCGCGCCGCCCTGCCCCAGCACGTGGTCACCATGTTGA ACAACATGCCCACCACCCTGCACCCGATGTCGCAGTTTGCTGCCGCCGTC ACTGCGCTGAATCACGACAGCAAATTCGCCAAGGCATACTCGGATGGTGT GCACAAGAGCAAGTACTGGGAGTACGTCTACGAGGACAGCATGGACCTGA TCGCCAAGCTCCCAGTGGTGGCGGCCACCATCTACTGCAACACCTATCGC GGCGGCAAGGGCTCCCGTTCGATTGACTCCAGCCTGGATTGGTCGGCGAA CTTTGTGAAGATGCTCGGCTACGACAACGCCCCCTTCACCGAGCTGATGC GTCTCTATCTGACCATCCACAGTGACCACGAGGGTGGCAACGTGTCTGCC CACACCGTTCACTTGGTGGGCTCCGCCCTCAGCGATCCCTACCTCTCCTT TGCCGCCGGTCTGAACGGTCTGGCTGGTCCCCTGCACGGACTGGCCAACC AGGAGGTGCTCGTGTGGCTGCGCAAGCTGCAGAAGGAGGCCGGCAACAAC CCGTCGGAGGAGCAGCTCAAGGAGTACATCTGGAAGACCCTCAAGTCCGG ACAGGTGGTTCCCGGCTACGGACACGCCGTGCTCCGCAAGACCGATCCCC GCTACACCTGCCAGCGTGAGTTCGCGCTGAAGCACCTGCCCGAGGACGAG ACGTTCCAGCTGGTGTCGAAGATCTACAAGGTGGTGCCACCAATTCTGAC CGAGACCGGCAAGGTGAAGAACCCCTGGCCCAATGTAGATGCCCATTCCG GTGTGCTGCTGCAGTACTACGGCATGAAGGAGATGAACTATTACACCGTG TTGTTCGGCGTTTCCCGTGCCCTCGGCGTGCTGGCCTCCCTCGTCTGGGA TCGCGCCCTCGGCCTGCCCATCGAGCGCCCCAAGTCATTCTCCACCGATC TGCTGGTCAAGATGGTCCAGAAGTAAGCAACTGGAGCAGGAGGAGCGGGA GGAGCTGGAGTTCAACCTTTTGTAGCCGGAGGACGATGGACGTAAAATGC AGAAGCTGTAGATTGTAATTGACGAGGGAAGAGGCAGAAAGAGAGAGATA GAGAGAGAGAGAATCGATCGGATTGGATTAGGATGAGATGGGATTGGATT GGATTGGATGGATATCGATATGACGACGCTGATATTGAGGGAGTTGGAGA TGTGTAGTTGAGGAGAAGAGCAACCAAATACGAACCAATAGGACAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6251077..6252060 | 323..1306 | 4875 | 99.7 | Plus |
chrX | 22417052 | chrX | 6252166..6252810 | 1302..1944 | 3145 | 99.5 | Plus |
chrX | 22417052 | chrX | 6242825..6243150 | 1..326 | 1510 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1569..1690 | 136..260 | 141 | 61.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6242825..6243150 | 1..326 | 97 | -> | Plus |
chrX | 6251081..6252058 | 327..1304 | 99 | -> | Plus |
chrX | 6252169..6252649 | 1305..1785 | 99 | == | Plus |
chrX | 6252726..6252810 | 1860..1944 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1569 | 108..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1569 | 108..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1569 | 108..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1569 | 108..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1569 | 108..1676 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1941 | 1..1944 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1941 | 1..1944 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1941 | 1..1944 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1941 | 1..1944 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
kdn-RB | 1..1941 | 1..1944 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6350629..6350954 | 1..326 | 99 | -> | Plus |
X | 6358902..6359879 | 327..1304 | 99 | -> | Plus |
X | 6359992..6360628 | 1305..1944 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6350629..6350954 | 1..326 | 99 | -> | Plus |
X | 6358902..6359879 | 327..1304 | 99 | -> | Plus |
X | 6359992..6360628 | 1305..1944 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6350629..6350954 | 1..326 | 99 | -> | Plus |
X | 6358902..6359879 | 327..1304 | 99 | -> | Plus |
X | 6359992..6360628 | 1305..1944 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6244662..6244987 | 1..326 | 99 | -> | Plus |
arm_X | 6252935..6253912 | 327..1304 | 99 | -> | Plus |
arm_X | 6254025..6254661 | 1305..1944 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6358727..6359052 | 1..326 | 99 | -> | Plus |
X | 6367000..6367977 | 327..1304 | 99 | -> | Plus |
X | 6368090..6368726 | 1305..1944 | 98 | Plus |
Translation from 107 to 1675
> AT12538.pep MFVRRFGNGSLGHHFAFQRRYLAKNSMWDSKSIGTPSSFRMRSKKDNVTG NLKEQQQSATPETLNMPDMQDAQKLPNVGAYVRMIAADGKSLRDVLAAKV PQEQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGI RFRGLSIPECQKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREW AERAALPQHVVTMLNNMPTTLHPMSQFAAAVTALNHDSKFAKAYSDGVHK SKYWEYVYEDSMDLIAKLPVVAATIYCNTYRGGKGSRSIDSSLDWSANFV KMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA GLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKSGQV VPGYGHAVLRKTDPRYTCQREFALKHLPEDETFQLVSKIYKVVPPILTET GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRA LGLPIERPKSFSTDLLVKMVQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19352-PA | 535 | GF19352-PA | 15..535 | 17..522 | 2453 | 88.9 | Plus |
Dana\GF17747-PA | 473 | GF17747-PA | 24..460 | 86..521 | 1284 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19590-PA | 464 | GG19590-PA | 11..464 | 69..522 | 2416 | 98.5 | Plus |
Dere\GG17162-PA | 483 | GG17162-PA | 46..469 | 100..522 | 1280 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24061-PA | 464 | GH24061-PA | 13..464 | 71..522 | 2274 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
kdn-PB | 522 | CG3861-PB | 1..522 | 1..522 | 2731 | 100 | Plus |
kdn-PA | 464 | CG3861-PA | 11..464 | 69..522 | 2359 | 99.3 | Plus |
CG14740-PA | 478 | CG14740-PA | 30..464 | 89..522 | 1248 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15188-PA | 464 | GI15188-PA | 13..464 | 71..522 | 2269 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26854-PA | 519 | GL26854-PA | 1..519 | 1..522 | 2382 | 86.4 | Plus |
Dper\GL21578-PA | 486 | GL21578-PA | 34..468 | 87..520 | 1371 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17736-PA | 519 | GA17736-PA | 1..519 | 1..522 | 2385 | 86.2 | Plus |
Dpse\GA26341-PB | 471 | GA26341-PB | 20..456 | 87..522 | 1374 | 55.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26044-PA | 478 | GM26044-PA | 30..464 | 89..522 | 1303 | 52.4 | Plus |
Dsec\GM12487-PA | 209 | GM12487-PA | 1..209 | 314..522 | 1117 | 100 | Plus |
Dsec\GM12486-PA | 307 | GM12486-PA | 1..104 | 1..97 | 390 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20606-PA | 498 | GD20606-PA | 30..484 | 89..522 | 1272 | 50.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17070-PA | 464 | GJ17070-PA | 13..464 | 71..522 | 2205 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16526-PA | 464 | GK16526-PA | 11..464 | 69..522 | 2350 | 95.4 | Plus |
Dwil\GK11572-PA | 486 | GK11572-PA | 37..472 | 87..521 | 1351 | 53.7 | Plus |
Dwil\GK23493-PA | 319 | GK23493-PA | 37..313 | 87..362 | 790 | 49.8 | Plus |
Translation from 107 to 1675
> AT12538.hyp MFVRRFGNGSLGHHFAFQRRYLAKNSMWDSKSIGTPSSFRMRSKKDNVTG NLKEQQQSATPETLNMPDMQDAQKLPNVGAYVRMIAADGKSLRDVLAAKV PQEQERVKNFRKQHGATKMGETTIDMMYGGMRGIKALVTETSVLDADEGI RFRGLSIPECQKVLPAADGGTEPLPEGLFWLLLTGEVPTKSQVQQLSREW AERAALPQHVVTMLNNMPTTLHPMSQFAAAVTALNHDSKFAKAYSDGVHK SKYWEYVYEDSMDLIAKLPVVAATIYCNTYRGGKGSRSIDSSLDWSANFV KMLGYDNAPFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA GLNGLAGPLHGLANQEVLVWLRKLQKEAGNNPSEEQLKEYIWKTLKSGQV VPGYGHAVLRKTDPRYTCQREFALKHLPEDETFQLVSKIYKVVPPILTET GKVKNPWPNVDAHSGVLLQYYGMKEMNYYTVLFGVSRALGVLASLVWDRA LGLPIERPKSFSTDLLVKMVQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
kdn-PB | 522 | CG3861-PB | 1..522 | 1..522 | 2731 | 100 | Plus |
kdn-PA | 464 | CG3861-PA | 11..464 | 69..522 | 2359 | 99.3 | Plus |
CG14740-PA | 478 | CG14740-PA | 30..464 | 89..522 | 1248 | 52.6 | Plus |