Clone AT12544 Report

Search the DGRC for AT12544

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:125
Well:44
Vector:pOTB7
Associated Gene/TranscriptCG12692-RB
Protein status:AT12544.pep: gold
Preliminary Size:1569
Sequenced Size:1963

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12692 2002-01-01 Sim4 clustering to Release 2
CG12692 2003-01-01 Sim4 clustering to Release 3
CG12692 2003-10-02 Blastp of sequenced clone
CG12692 2008-04-29 Release 5.5 accounting
CG12692 2008-08-15 Release 5.9 accounting
CG12692 2008-12-18 5.12 accounting

Clone Sequence Records

AT12544.complete Sequence

1963 bp (1963 high quality bases) assembled on 2003-10-02

GenBank Submission: BT011009

> AT12544.complete
GAAGACACTACTTTTAAAATTGTGTAGAATTCTTACAAGTTTTGTATATA
TATATATTTTACTGCACTCGTTTGTGAAACGAAAATATGGGGCACATCGA
TGGCACAAATAAACTGAAAGGCTTCGCTCGTCCCGCATTCACCAGCGAAC
TGGCCTTCAATAGCGTGGTGCCATGGAGCAATGAGATCCATCGACGCCAC
GGTGAGGCCATCCATCCGTGCAACGATGCGATGGACTTCCATGCGTCGGT
GTTTAGAAGTCTGGGTGCCGTGACGCGTGTGTGCATTGGCACATCAACAT
TTTGGTGTACTTCGTCACTTTTGCAATTTCATAGCAACTATTTTGATCGC
AACATTTGTCCGGTGAATTGCTTTCGCGAGGGCACCGACCTTATTGCCGT
GGGCTTTCGAGCTGCCTACACTTGGATGAGACTGCAGGAGCCACTGGATC
CATTCATGCAACCAGATAAACTAATGACGCTCCTGCACACAGCCGTCCAG
CTGGAGATGCCGGCACTGAAAGCATTGTGCTATGAACAACTGTGCACCGA
TCGCTTTCGCGAGGAGACCGCCTTTCAGGTTTACTTGAGGGCTTTGAAAT
ATCCGCAACTCGAGGAGCTGCGCAAACTGATGCTGCAAAGGATCGGTGCT
GCTTTTCTGGCCGTGCTGGGTGGTGATGATTTTCAGCGAATGCCTCTCGA
GGATGTGATTACCATGCTGCAGCAGGACTCATTGGGTGTCAATTCGGAAA
TGGAGGTGCTTGTGGCCATTATAAGATGGCTGAATTGTCAATCGAAATGC
ATTGACCAGGCGACGCCACTATTGATGGACTGCCTTCGGCTGACACTCTT
ACCACTGCCAATTTTGAAAAGATTTTGGCGCTGTGCCATGGCACCACCGG
TGCCCGACGAGCCCTTTATGAACGCTGTTCGTGGCAATATTCACATTCGT
GAGAGGATCAGCTGTGCAATTACTGTGGTCCAAATGCACCATTTGCATAC
AAGTCGTCGTGAGTTTCTCGACTTCTGTCGCTCCAAGGGCTTGCTGGTCG
ATATGCCCAGGGAGTGGATATACGATGAGCAGTGCCATTATCATTTGCCG
CGACCTGGTGGTCCCTACTCTCATCTTATCTGTGTTCATGTCATTTCGAA
TTATGCGATACAAAGGGCTCAGCGTCTAATGGAATCCTCAAAGCGTTGGC
CCAGACGTGTTAATACATACATGCCGCCGTCCGATGATCTACAGACCATC
AATGAGCTGCCCGAGGACAAGGATGAGGAGGCGCAGGTGTCAGTAGAGCC
ATCAGCGCCAGAAATGTCCGAAGGTCTACCGCAGCCCGAAGAGGATGATT
GTTTCATTGCTCGCCTCTTTCGTGGCACACTATTGCGACTGAACGAAGTG
ATGGCCGCGCAGGACAGAAATATTGAGCGACGCATTGACAATCTTATACG
TGATGGTACATTAAGGCCCAGGTTTATACCCAACGCTATGTCGAGATTTG
TATTGCCAACAGCAATGACTTGTGCTGCACAGGAAGATCTTCAAGAAGAT
CTCTTTCTCCAAACCGATTTCTATTCGAGCAACCTGGACGCCATCGATGC
GTATTTTTTTCTTCATGTCTGTCGAATGAGGCAGTTGGTCCAGCCGAAAG
TTGTAGTTCCTATCGAGAAATCGTCCGAGGAGAGTGTGCGTCCCATGGAG
AGCTATGTGCTCGAAACCGACCAAATGATCAAAGTCCTAGGCTTTTAAAT
GTATATGAACATATATATATATATTTCGCATATGAGAAACACACATACTC
CCCCCCCCCCCTAACCACACCCATTACACCCTTTAAATTACAGTTAACAA
AATGACATAATAACAAATGTTCGATTGAAATGCCTCAAAAATGTATAAGA
TCGATAAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

AT12544.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12692-RB 1969 CG12692-RB 55..1960 5..1911 9495 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4193218..4194766 1911..362 7685 99.9 Minus
chrX 22417052 chrX 4194861..4195148 368..81 1425 99.7 Minus
chrX 22417052 chrX 4195331..4195407 81..5 385 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4300152..4301700 1911..362 7700 99.9 Minus
X 23542271 X 4301795..4302082 368..81 1425 99.7 Minus
X 23542271 X 4302265..4302341 81..5 385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4308250..4309798 1911..362 7710 99.9 Minus
X 23527363 X 4309893..4310180 368..81 1425 99.6 Minus
X 23527363 X 4310363..4310439 81..5 385 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:09:37 has no hits.

AT12544.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:10:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4193218..4194765 363..1911 99 <- Minus
chrX 4194867..4195147 82..362 100 <- Minus
chrX 4195331..4195412 1..81 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:32 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1662 87..1748 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1662 87..1748 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:25 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1662 87..1748 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:21 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1662 87..1748 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:38:28 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1749 1..1748 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:32 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1911 1..1911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1911 1..1911 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:26 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1749 1..1748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:21 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
CG12692-RB 1..1911 1..1911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
X 4301801..4302081 82..362 100 <- Minus
X 4302265..4302346 1..81 98   Minus
X 4300152..4301699 363..1911 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
X 4301801..4302081 82..362 100 <- Minus
X 4302265..4302346 1..81 98   Minus
X 4300152..4301699 363..1911 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
X 4301801..4302081 82..362 100 <- Minus
X 4302265..4302346 1..81 98   Minus
X 4300152..4301699 363..1911 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:46 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4194185..4195732 363..1911 99 <- Minus
arm_X 4195834..4196114 82..362 100 <- Minus
arm_X 4196298..4196379 1..81 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:47:51 Download gff for AT12544.complete
Subject Subject Range Query Range Percent Splice Strand
X 4308250..4309797 363..1911 99 <- Minus
X 4309899..4310179 82..362 100 <- Minus
X 4310363..4310444 1..81 98   Minus

AT12544.hyp Sequence

Translation from 86 to 1747

> AT12544.hyp
MGHIDGTNKLKGFARPAFTSELAFNSVVPWSNEIHRRHGEAIHPCNDAMD
FHASVFRSLGAVTRVCIGTSTFWCTSSLLQFHSNYFDRNICPVNCFREGT
DLIAVGFRAAYTWMRLQEPLDPFMQPDKLMTLLHTAVQLEMPALKALCYE
QLCTDRFREETAFQVYLRALKYPQLEELRKLMLQRIGAAFLAVLGGDDFQ
RMPLEDVITMLQQDSLGVNSEMEVLVAIIRWLNCQSKCIDQATPLLMDCL
RLTLLPLPILKRFWRCAMAPPVPDEPFMNAVRGNIHIRERISCAITVVQM
HHLHTSRREFLDFCRSKGLLVDMPREWIYDEQCHYHLPRPGGPYSHLICV
HVISNYAIQRAQRLMESSKRWPRRVNTYMPPSDDLQTINELPEDKDEEAQ
VSVEPSAPEMSEGLPQPEEDDCFIARLFRGTLLRLNEVMAAQDRNIERRI
DNLIRDGTLRPRFIPNAMSRFVLPTAMTCAAQEDLQEDLFLQTDFYSSNL
DAIDAYFFLHVCRMRQLVQPKVVVPIEKSSEESVRPMESYVLETDQMIKV
LGF*

AT12544.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12692-PC 553 CG12692-PC 1..553 1..553 2932 100 Plus
CG12692-PB 553 CG12692-PB 1..553 1..553 2932 100 Plus
CG9970-PA 484 CG9970-PA 146..434 60..346 325 32.4 Plus
CG30357-PA 451 CG30357-PA 173..393 107..336 212 28.8 Plus
CG12857-PA 440 CG12857-PA 95..381 44..336 206 24.7 Plus

AT12544.pep Sequence

Translation from 86 to 1747

> AT12544.pep
MGHIDGTNKLKGFARPAFTSELAFNSVVPWSNEIHRRHGEAIHPCNDAMD
FHASVFRSLGAVTRVCIGTSTFWCTSSLLQFHSNYFDRNICPVNCFREGT
DLIAVGFRAAYTWMRLQEPLDPFMQPDKLMTLLHTAVQLEMPALKALCYE
QLCTDRFREETAFQVYLRALKYPQLEELRKLMLQRIGAAFLAVLGGDDFQ
RMPLEDVITMLQQDSLGVNSEMEVLVAIIRWLNCQSKCIDQATPLLMDCL
RLTLLPLPILKRFWRCAMAPPVPDEPFMNAVRGNIHIRERISCAITVVQM
HHLHTSRREFLDFCRSKGLLVDMPREWIYDEQCHYHLPRPGGPYSHLICV
HVISNYAIQRAQRLMESSKRWPRRVNTYMPPSDDLQTINELPEDKDEEAQ
VSVEPSAPEMSEGLPQPEEDDCFIARLFRGTLLRLNEVMAAQDRNIERRI
DNLIRDGTLRPRFIPNAMSRFVLPTAMTCAAQEDLQEDLFLQTDFYSSNL
DAIDAYFFLHVCRMRQLVQPKVVVPIEKSSEESVRPMESYVLETDQMIKV
LGF*

AT12544.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21477-PA 832 GF21477-PA 60..409 24..369 855 47.4 Plus
Dana\GF21280-PA 519 GF21280-PA 159..461 58..356 336 30.2 Plus
Dana\GF12567-PA 929 GF12567-PA 289..510 106..336 260 32.3 Plus
Dana\GF11239-PA 434 GF11239-PA 126..400 55..336 212 26.5 Plus
Dana\GF13514-PA 442 GF13514-PA 119..407 61..356 198 23.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18549-PA 593 GG18549-PA 1..580 1..548 1404 50.6 Plus
Dere\GG14493-PA 478 GG14493-PA 140..438 60..356 354 32.2 Plus
Dere\GG10620-PA 844 GG10620-PA 209..429 107..336 214 28 Plus
Dere\GG22401-PA 441 GG22401-PA 97..413 43..369 201 25.3 Plus
Dere\GG11552-PA 413 GG11552-PA 97..301 65..277 180 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21146-PA 430 GH21146-PA 112..312 59..260 186 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12692-PC 553 CG12692-PC 1..553 1..553 2932 100 Plus
CG12692-PB 553 CG12692-PB 1..553 1..553 2932 100 Plus
CG9970-PA 484 CG9970-PA 146..434 60..346 325 32.4 Plus
CG30357-PA 451 CG30357-PA 173..393 107..336 212 28.8 Plus
CG12857-PA 440 CG12857-PA 95..381 44..336 206 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14913-PA 783 GI14913-PA 457..737 65..346 317 29.3 Plus
Dmoj\GI23030-PA 407 GI23030-PA 87..350 64..337 214 26.4 Plus
Dmoj\GI18745-PA 431 GI18745-PA 112..389 59..351 201 25.2 Plus
Dmoj\GI20387-PA 503 GI20387-PA 157..453 31..336 201 25.2 Plus
Dmoj\GI20967-PA 434 GI20967-PA 11..279 63..336 193 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14185-PA 431 GL14185-PA 70..394 1..337 472 35 Plus
Dper\GL25890-PA 427 GL25890-PA 100..408 60..367 331 29 Plus
Dper\GL23923-PA 391 GL23923-PA 125..277 101..256 184 30.9 Plus
Dper\GL10625-PA 336 GL10625-PA 21..287 59..336 178 25.4 Plus
Dper\GL14381-PA 481 GL14381-PA 255..427 157..336 169 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11760-PA 700 GA11760-PA 70..440 1..362 504 33.8 Plus
Dpse\GA25176-PA 427 GA25176-PA 100..408 60..367 328 29 Plus
Dpse\GA11860-PA 399 GA11860-PA 84..350 59..336 183 25.4 Plus
Dpse\GA27108-PA 385 GA27108-PA 125..277 101..256 182 31.1 Plus
Dpse\GA27347-PA 339 GA27347-PA 36..289 59..336 172 23.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12695-PA 556 GM12695-PA 1..556 1..553 2003 69.4 Plus
Dsec\GM14096-PA 465 GM14096-PA 127..431 60..360 318 30.4 Plus
Dsec\GM20186-PA 444 GM20186-PA 98..410 43..362 205 23.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16301-PA 565 GD16301-PA 1..565 1..553 1968 68.2 Plus
Dsim\GD13368-PA 465 GD13368-PA 127..425 60..356 323 31.2 Plus
Dsim\GD25659-PA 444 GD25659-PA 98..385 43..336 197 23.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18946-PA 284 GJ18946-PA 15..245 130..357 274 29.7 Plus
Dvir\GJ20856-PA 381 GJ20856-PA 122..353 121..349 209 29.7 Plus
Dvir\GJ24621-PA 415 GJ24621-PA 95..360 63..339 205 26 Plus
Dvir\GJ21767-PA 429 GJ21767-PA 112..387 59..351 190 23.9 Plus
Dvir\GJ22113-PA 500 GJ22113-PA 179..450 64..336 177 26.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14125-PA 450 GK14125-PA 126..414 60..346 363 32.1 Plus
Dwil\GK19524-PA 376 GK19524-PA 65..275 65..281 223 31.2 Plus
Dwil\GK11754-PA 437 GK11754-PA 87..351 60..336 209 26 Plus
Dwil\GK13774-PA 798 GK13774-PA 396..674 60..338 208 26.8 Plus
Dwil\GK19618-PA 440 GK19618-PA 114..314 59..260 193 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16863-PA 554 GE16863-PA 27..544 36..551 1316 53.3 Plus
Dyak\GE21682-PA 477 GE21682-PA 141..445 60..360 334 31.6 Plus
Dyak\GE22796-PA 828 GE22796-PA 198..418 107..336 234 29.1 Plus
Dyak\GE11436-PA 431 GE11436-PA 139..418 65..356 174 26.7 Plus
Dyak\GE20086-PA 630 GE20086-PA 61..262 57..260 174 24.3 Plus