Clone AT12568 Report

Search the DGRC for AT12568

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:125
Well:68
Vector:pOTB7
Associated Gene/TranscriptCG32392-RA
Protein status:AT12568.pep: gold
Preliminary Size:246
Sequenced Size:1678

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14912 2002-01-01 Sim4 clustering to Release 2
CG32392 2002-01-18 Blastp of sequenced clone
CG32392 2003-01-01 Sim4 clustering to Release 3
CG32392 2008-04-29 Release 5.5 accounting
CG32392 2008-08-15 Release 5.9 accounting
CG32392 2008-12-18 5.12 accounting

Clone Sequence Records

AT12568.complete Sequence

1678 bp (1678 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089319

> AT12568.complete
CCTCGTGCCGCACATAAATAAATCTATTTTGTACACATAAATTTGGCAAG
CGGTAGACCTTTATCCGATATATATATTTTAAGTTTTTAAAAACCTCAAT
AACGCAACATAGCAATAGTTAGCAATGCCGACGATCCCGAAGAGGGATTA
CAAACCCAATGGTGGTGGCAAAAGCTCAGGAATGGATTTCCTCAGTTCCG
GCATCAAGGGAACCGAGGTCACCGAGATGCAGCTCAAGTGGCACGAGAAT
CCTTGTCCAGCGCCACCATGCAAACAGGCATTTTGGTGGGCCAGTCATCC
CAAGCCGATCAAAATCAAAGGTTGCCCCAAACCCGTCGTCCCGCCGCCGG
AACCCTACAAGAACGTCATGTACGACCGTCGCGTCATAAAGGGCAGCAAC
TTCGGCAACGCCTCTCTGGTGACGGATGTGGATCCCTTCGACAAGGCCGC
CGAATTGAGGCGTCGCAATATGTTGCGCAAACGGACGATGCAGTGCCGCA
ATCAGAGAAATGTCCTGGGCACACCGCCGCCGGTCAAGGGGCGGAAGCAC
GAGACCATACAGACGGAGAAGTATCTGGAGAAGTTGGTGCAGCGTCCGCC
GGAGTTCACCATCGACACGCAGACGGACCTGTTCCTCGAGAAGCCACCGA
CGCCTCCGTTCATACCGGCCAAGGTGGGCGTGGATGTGGCCACCGAGATC
GGTGAGGGCGAACTCTTCCACTTCGATGCCGAGGCGCAGCCAATCATCGA
TGTCCTGGTGGACGCCTGCATTGAACAAAGCATGCTGGAGGTGGCTCACG
AGATGGAACTGTCCAGTCTGCGACGCAAACAGGAAGAATTCCTGGCCCAG
AGGGAGGCGGAACTGGCCGAGCTGCGCCGCTTGGAAGCTGAGGAGCTGCG
CTTGCAGGCGGAGAAGGAGCGTCGCCTGCGACAGGATGCGATTGCCAAGG
AGCTGGACGCTGAGATGCAGAAGAGCGTGACGGCGGCCAAGTTGCTCCAG
GGACACATTGCCAGTCTGGTGCCGGAGGTGCTGGAGAACATTGAGCCGGC
CAGCGATGCCGTTAAGAAGGAGCAGCTTATGAAGAGCGTCTGCCCGTGGT
TGTCCGCCGAGGTGGCCGAGGAAGTGGGCCATATAGTGGACTCGCGCGAG
ATTCTCACCGCCATCATTCAGGAGATTATCAAGCAGCGTGCCGAGATCTA
TGCCGGCTACAAGGAACCTGAATCGGAACCATCCGGACCGGATGCGGGCG
TTTGTGAGGAGGAGGGCTGTGCCATCGATGAGATGGAGGCGTGTCCCTGC
GAATCGGAAACGGAAATGGAGGAGTGCCCCGAACCGCCACCACCGGCTCC
TCATCTCTAAGTGATTGCGTTCGAGTTTTAGTTCATATATATATTTCGAG
TGGGATACTGATTCCGCACACATGTAACACTAACACACTCCTGCTATTAA
ATCAAGGTTGGCTGTAACTTTGTGGTTGTGTCTGGTGAAGAACTCAATTC
GCCGCAGGATTCCAATCGAGCCTGGGCGCCAAACACAATTGCATAGCGGC
GGCGGCGAAATGGCATCGAAAAAATGGAATGGCATATTGTAAACTGGATA
CTTGTTAAAGGTTTTTGTGTTACCGAAAATTCAACCAATAAAGCTCAACA
AAATAAACCGAAAAAAAAAAAAAAAAAA

AT12568.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-RA 1707 CG32392-RA 38..1694 11..1667 8150 99.4 Plus
CG32392-RB 2501 CG32392-RB 1163..2499 331..1667 6565 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6749005..6749827 1660..838 4100 99.9 Minus
chr3L 24539361 chr3L 6749892..6750308 837..421 2070 99.8 Minus
chr3L 24539361 chr3L 6755273..6755590 330..11 1535 99.4 Minus
chr3L 24539361 chr3L 6750393..6750483 421..331 455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6756625..6757454 1667..838 4045 99.2 Minus
3L 28110227 3L 6757519..6757935 837..421 2070 99.8 Minus
3L 28110227 3L 6762923..6763242 330..11 1585 99.7 Minus
3L 28110227 3L 6758020..6758110 421..331 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6749725..6750554 1667..838 4045 99.1 Minus
3L 28103327 3L 6750619..6751035 837..421 2070 99.7 Minus
3L 28103327 3L 6756023..6756342 330..11 1585 99.6 Minus
3L 28103327 3L 6751120..6751210 421..331 455 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:51:01 has no hits.

AT12568.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:52:08 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6749892..6750307 422..837 99 <- Minus
chr3L 6749005..6749827 838..1660 99 <- Minus
chr3L 6750393..6750483 331..421 100 <- Minus
chr3L 6755273..6755594 5..330 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:02:22 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 1..1236 125..1360 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:48:04 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 1..1236 125..1360 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:43 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 1..1236 125..1360 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:39 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 1..1236 125..1360 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:22 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 1..1236 125..1360 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:12:07 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 3..1650 10..1656 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:48:04 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 3..1650 10..1656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:43 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 3..1654 10..1660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:39 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 3..1650 10..1656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:22 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32392-RA 3..1654 10..1660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:08 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6756632..6757454 838..1660 99 <- Minus
3L 6757519..6757934 422..837 99 <- Minus
3L 6758020..6758110 331..421 100 <- Minus
3L 6762923..6763246 5..330 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:08 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6756632..6757454 838..1660 99 <- Minus
3L 6757519..6757934 422..837 99 <- Minus
3L 6758020..6758110 331..421 100 <- Minus
3L 6762923..6763246 5..330 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:08 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6756632..6757454 838..1660 99 <- Minus
3L 6757519..6757934 422..837 99 <- Minus
3L 6758020..6758110 331..421 100 <- Minus
3L 6762923..6763246 5..330 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:43 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6750619..6751034 422..837 99 <- Minus
arm_3L 6751120..6751210 331..421 100 <- Minus
arm_3L 6756023..6756346 5..330 98   Minus
arm_3L 6749732..6750554 838..1660 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:49:29 Download gff for AT12568.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6749732..6750554 838..1660 99 <- Minus
3L 6750619..6751034 422..837 99 <- Minus
3L 6751120..6751210 331..421 100 <- Minus
3L 6756023..6756346 5..330 98   Minus

AT12568.pep Sequence

Translation from 124 to 1359

> AT12568.pep
MPTIPKRDYKPNGGGKSSGMDFLSSGIKGTEVTEMQLKWHENPCPAPPCK
QAFWWASHPKPIKIKGCPKPVVPPPEPYKNVMYDRRVIKGSNFGNASLVT
DVDPFDKAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKY
LEKLVQRPPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHF
DAEAQPIIDVLVDACIEQSMLEVAHEMELSSLRRKQEEFLAQREAELAEL
RRLEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTAAKLLQGHIASLVP
EVLENIEPASDAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQE
IIKQRAEIYAGYKEPESEPSGPDAGVCEEEGCAIDEMEACPCESETEMEE
CPEPPPPAPHL*

AT12568.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10886-PA 408 GF10886-PA 1..408 1..411 1911 90.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15023-PA 411 GG15023-PA 1..411 1..411 2111 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16107-PA 404 GH16107-PA 1..402 1..405 1707 82.2 Plus
Dgri\GH17973-PA 665 GH17973-PA 323..663 65..405 1535 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-PA 411 CG32392-PA 1..411 1..411 2164 100 Plus
CG32392-PB 659 CG32392-PB 317..659 69..411 1765 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12376-PA 686 GI12376-PA 344..686 69..411 1579 86.6 Plus
Dmoj\GI12374-PA 97 GI12374-PA 12..67 14..69 240 73.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13231-PA 699 GL13231-PA 295..686 5..397 1789 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28596-PA 644 GA28596-PA 303..628 69..394 1558 90.5 Plus
Dpse\GA28595-PA 119 GA28595-PA 1..85 1..68 232 57.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13816-PA 723 GM13816-PA 370..723 69..411 1538 85 Plus
Dsec\GM13816-PA 723 GM13816-PA 1..71 1..71 402 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13109-PA 413 GD13109-PA 1..413 1..411 2120 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12266-PA 671 GJ12266-PA 325..671 65..411 1542 84.7 Plus
Dvir\GJ12265-PA 68 GJ12265-PA 1..68 1..69 252 71.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12574-PA 737 GK12574-PA 397..727 69..401 1477 86 Plus
Dwil\GK12574-PA 737 GK12574-PA 1..66 1..69 336 85.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20467-PA 411 GE20467-PA 1..411 1..411 2116 97.1 Plus

AT12568.hyp Sequence

Translation from 124 to 1359

> AT12568.hyp
MPTIPKRDYKPNGGGKSSGMDFLSSGIKGTEVTEMQLKWHENPCPAPPCK
QAFWWASHPKPIKIKGCPKPVVPPPEPYKNVMYDRRVIKGSNFGNASLVT
DVDPFDKAAELRRRNMLRKRTMQCRNQRNVLGTPPPVKGRKHETIQTEKY
LEKLVQRPPEFTIDTQTDLFLEKPPTPPFIPAKVGVDVATEIGEGELFHF
DAEAQPIIDVLVDACIEQSMLEVAHEMELSSLRRKQEEFLAQREAELAEL
RRLEAEELRLQAEKERRLRQDAIAKELDAEMQKSVTAAKLLQGHIASLVP
EVLENIEPASDAVKKEQLMKSVCPWLSAEVAEEVGHIVDSREILTAIIQE
IIKQRAEIYAGYKEPESEPSGPDAGVCEEEGCAIDEMEACPCESETEMEE
CPEPPPPAPHL*

AT12568.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32392-PA 411 CG32392-PA 1..411 1..411 2164 100 Plus
CG32392-PB 659 CG32392-PB 317..659 69..411 1765 99.7 Plus