Clone AT12644 Report

Search the DGRC for AT12644

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:126
Well:44
Vector:pOTB7
Associated Gene/TranscriptCG32087-RA
Protein status:AT12644.pep: gold
Preliminary Size:3366
Sequenced Size:1485

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7308 2002-01-01 Sim4 clustering to Release 2
CG32087 2002-06-12 Blastp of sequenced clone
CG32087 2003-01-01 Sim4 clustering to Release 3
CG32087 2008-04-29 Release 5.5 accounting
CG32087 2008-08-15 Release 5.9 accounting
CG32087 2008-12-18 5.12 accounting

Clone Sequence Records

AT12644.complete Sequence

1485 bp (1485 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122069

> AT12644.complete
TGAATTTCTTATCTAAATCTTCTAGGTTCTAGATTTAAAACACGATATAT
CTCAGTGCCTAGTGCGGAAAATAGTAAATCATGGCTGCTAGCAATGACAC
TGAAGCAGGACACTCTTCATTGCCCAGTGAAATAGATCGCTTGGCTGAAC
TGGTACAGGAGCGGCTGGAATGGAAGTCTCTGGTTCTTTGGCGTCGTCCT
GTGCAGACTTTGAAGTATGGTGGCCTGGAGGCCGGGCATTTGTTGCTATC
CTTCATCGAAAAGCTGTTGAATCTGTGGCTAGTGGGCGGTCTGCTGCTGT
TGGGCATGTTTTGTTTACTGCCAGGACCTCATGCGGATTTCGTGATTTTC
TGCAAGCATAGGTTTGGATTTGCGGTCTACTGGCTGGGCCTGGGCGTGCT
CTCATCTGTGGGCTTTGGCACTGGGTTGCACACCTTTCTGCTCTACCTGG
GCCCTCACCTAGCAGCAGTCACTCTGGCCGCCTACGAGTGTCAAACGCTG
GACTTTCCCACTCCTCCGTATCCGGACATAAAAGTCTGCCCACAGGAGCC
GTACAAGCGCAATTACCCAGATGTGTGGCAAATTTTGGCAAAGGTGCGTC
CGGAGGCACTACTCTGGGGCATTGGCACTGCTCTTGGTGAGCTGCCGCCA
TACTTTATGACACGTAGAGCACGGCTCTCTGGCAAGGAGTTGGATGGAGC
GGAGGAGGAAAAGTTATTGGATGAAAGGCGAAGGTGCGGAAAGCTAGGCA
TGCTCGACCATGCCAAGCTGTTCATGGAACGGGTGATGCGAAGAGTGGGC
TTCATGGGAATACTATTCTGCGCCAGCGTACCCAATCCTCTGTTCGACCT
GGCCGGCATAACGTGCGGACATTTTCTGGTGCCCTTTTGGAAGTTCTTTG
TGGCCACCCTGATCGGCAAGGCGTTAATCAAGGCCACCATACAGCAGTTG
TTTGTTATTGCGTCCCTAACCGAGAGTCTAGTCGATAGGTTTGTGGTCGG
TCTGGGGAAGCTACCCTATTTGGGACCTCCAATGCAGCGCATGATCAGGG
AACTGCTGCAGTCGACGAAGCAGCAGATGCATGGAACAGTAAATTCCAAT
TCCCTGGCCTATCTAAGCCATCTGGTTCGTGCTTTCGAGCTGTGTGCCTT
CATCATGGTCACCTGTTTCGTAGTATCTTCGCTGAACTGCCTCGCGCAAA
TCCATTGCAAGCGCCAGCAGGAGAAGAAGCGTAAGATGCGAAACCTGGAG
ATGATACTGTATGCCGATACGGAGACATCCTCGTCGGAGGAGTTCAGCGT
CTAAGCAGCAGATACTGCTATTAAGCTAGAGATAACTAATCACTGAATTT
TGTAGACTTAAATCCACAATGAAGTGTCTTGTAATGTCCTATATCCTTAA
TTACTTACTTTAAACTAATCATCAGTCAGAGAAACTCTTGAATTTAACGT
TTTATATTCTTTATTTTAAAAAAAAAAAAAAAAAA

AT12644.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32087-RA 1469 CG32087-RA 1..1469 1..1469 7285 99.7 Plus
Tango5-RB 1889 Tango5-RB 483..598 375..490 310 84.4 Plus
Tango5-RA 2188 Tango5-RA 782..897 375..490 310 84.4 Plus
Tango5-RB 1889 Tango5-RB 935..1049 818..932 260 81.7 Plus
Tango5-RA 2188 Tango5-RA 1234..1348 818..932 260 81.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11723028..11724494 1..1467 7290 99.8 Plus
chrX 22417052 chrX 10652980..10653095 490..375 310 84.5 Minus
chrX 22417052 chrX 10652251..10652352 932..831 255 83.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:46:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11732144..11733612 1..1469 7285 99.7 Plus
X 23542271 X 10761617..10761732 490..375 310 84.5 Minus
X 23542271 X 10760888..10760989 932..831 255 83.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11725244..11726712 1..1469 7285 99.7 Plus
X 23527363 X 10769715..10769830 490..375 310 84.4 Minus
X 23527363 X 10768986..10769087 932..831 255 83.3 Minus
Blast to na_te.dros performed on 2019-03-16 15:51:48 has no hits.

AT12644.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:52:34 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11723028..11724476 1..1449 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:02:38 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1224 81..1304 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:24:02 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1224 81..1304 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:56:31 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1224 81..1304 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:14:41 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1224 81..1304 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:58 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1224 81..1304 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:51:22 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1467 1..1467 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:24:02 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1467 1..1467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:56:31 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1467 1..1467 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:14:42 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 2..1468 1..1467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:58 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
CG32087-RA 1..1467 1..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:34 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11732144..11733610 1..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:34 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11732144..11733610 1..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:34 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11732144..11733610 1..1467 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:56:31 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11725244..11726710 1..1467 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:47:40 Download gff for AT12644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11725244..11726710 1..1467 99   Plus

AT12644.hyp Sequence

Translation from 80 to 1303

> AT12644.hyp
MAASNDTEAGHSSLPSEIDRLAELVQERLEWKSLVLWRRPVQTLKYGGLE
AGHLLLSFIEKLLNLWLVGGLLLLGMFCLLPGPHADFVIFCKHRFGFAVY
WLGLGVLSSVGFGTGLHTFLLYLGPHLAAVTLAAYECQTLDFPTPPYPDI
KVCPQEPYKRNYPDVWQILAKVRPEALLWGIGTALGELPPYFMTRRARLS
GKELDGAEEEKLLDERRRCGKLGMLDHAKLFMERVMRRVGFMGILFCASV
PNPLFDLAGITCGHFLVPFWKFFVATLIGKALIKATIQQLFVIASLTESL
VDRFVVGLGKLPYLGPPMQRMIRELLQSTKQQMHGTVNSNSLAYLSHLVR
AFELCAFIMVTCFVVSSLNCLAQIHCKRQQEKKRKMRNLEMILYADTETS
SSEEFSV*

AT12644.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32087-PA 407 CG32087-PA 1..407 1..407 2135 100 Plus
Tango5-PB 428 CG32675-PB 7..399 2..382 951 51.5 Plus
Tango5-PE 530 CG32675-PE 109..501 2..382 951 51.5 Plus
Tango5-PF 530 CG32675-PF 109..501 2..382 951 51.5 Plus
Tango5-PD 530 CG32675-PD 109..501 2..382 951 51.5 Plus

AT12644.pep Sequence

Translation from 80 to 1303

> AT12644.pep
MAASNDTEAGHSSLPSEIDRLAELVQERLEWKSLVLWRRPVQTLKYGGLE
AGHLLLSFIEKLLNLWLVGGLLLLGMFCLLPGPHADFVIFCKHRFGFAVY
WLGLGVLSSVGFGTGLHTFLLYLGPHLAAVTLAAYECQTLDFPTPPYPDI
KVCPQEPYKRNYPDVWQILAKVRPEALLWGIGTALGELPPYFMTRRARLS
GKELDGAEEEKLLDERRRCGKLGMLDHAKLFMERVMRRVGFMGILFCASV
PNPLFDLAGITCGHFLVPFWKFFVATLIGKALIKATIQQLFVIASLTESL
VDRFVVGLGKLPYLGPPMQRMIRELLQSTKQQMHGTVNSNSLAYLSHLVR
AFELCAFIMVTCFVVSSLNCLAQIHCKRQQEKKRKMRNLEMILYADTETS
SSEEFSV*

AT12644.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25286-PA 397 GF25286-PA 17..389 19..397 1333 66.5 Plus
Dana\GF20825-PA 527 GF20825-PA 127..485 34..382 949 55.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15526-PA 1021 GG15526-PA 615..1021 1..407 1813 85.5 Plus
Dere\GG18903-PA 539 GG18903-PA 118..510 2..382 950 51.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15080-PA 418 GH15080-PA 2..401 3..403 1083 54.3 Plus
Dgri\GH12107-PA 513 GH12107-PA 114..487 27..386 956 52.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32087-PA 407 CG32087-PA 1..407 1..407 2135 100 Plus
Tango5-PB 428 CG32675-PB 7..399 2..382 951 51.5 Plus
Tango5-PE 530 CG32675-PE 109..501 2..382 951 51.5 Plus
Tango5-PF 530 CG32675-PF 109..501 2..382 951 51.5 Plus
Tango5-PD 530 CG32675-PD 109..501 2..382 951 51.5 Plus
Tango5-PC 530 CG32675-PC 109..501 2..382 951 51.5 Plus
Tango5-PA 530 CG32675-PA 109..501 2..382 951 51.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13727-PA 415 GI13727-PA 2..379 4..383 1058 54.8 Plus
Dmoj\GI15163-PA 513 GI15163-PA 111..487 28..386 959 52.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20713-PA 413 GL20713-PA 11..410 17..404 1237 60.8 Plus
Dper\GL26903-PA 440 GL26903-PA 219..392 213..382 423 50.3 Plus
Dper\GL13661-PA 176 GL13661-PA 41..174 106..249 243 41.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28293-PA 413 GA28293-PA 11..410 17..404 1222 60.8 Plus
Dpse\GA17061-PA 541 GA17061-PA 133..493 34..382 909 52.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25295-PA 400 GM25295-PA 1..400 1..407 1827 89.9 Plus
Dsec\GM11289-PA 516 GM11289-PA 95..487 2..382 959 51.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14326-PA 400 GD14326-PA 1..400 1..407 1860 90.9 Plus
Dsim\GD24543-PA 344 GD24543-PA 188..315 261..382 250 46.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14073-PA 408 GJ14073-PA 22..373 27..385 1091 57.6 Plus
Dvir\GJ14869-PA 503 GJ14869-PA 109..480 27..384 952 52.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10493-PA 426 GK10493-PA 6..404 12..406 1084 51.6 Plus
Dwil\GK10339-PA 546 GK10339-PA 136..502 34..382 914 52.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21844-PA 397 GE21844-PA 3..397 10..407 1755 86.7 Plus
Dyak\GE15374-PA 541 GE15374-PA 125..510 9..382 968 51.8 Plus