Clone AT12695 Report

Search the DGRC for AT12695

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:126
Well:95
Vector:pOTB7
Associated Gene/TranscriptPi4KIIalpha-RB
Protein status:AT12695.pep: gold
Preliminary Size:3397
Sequenced Size:2166

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2929 2002-09-24 Blastp of sequenced clone
CG2929 2003-01-01 Sim4 clustering to Release 3
Pi4KIIalpha 2008-04-29 Release 5.5 accounting
Pi4KIIalpha 2008-08-15 Release 5.9 accounting
Pi4KIIalpha 2008-12-18 5.12 accounting

Clone Sequence Records

AT12695.complete Sequence

2166 bp (2166 high quality bases) assembled on 2002-09-24

GenBank Submission: BT001304

> AT12695.complete
GTCATCGCCCCACATTTCAAAGCATTTTTTACAATTTTATGGTTTTTACA
AGAATTAGTTTTTTTTCGAAATTGAGCACAAAATTGTGTGTTATAAATCT
TGGTGTACTTGGATGTCACCGTGGACGTCTGTAGCTCGGAATCGAAGTCA
GTCGGGAAGCATATAAAGAATTTCGAGGAAGGCACTTCAAAAATGGAACT
TGTTCCTTTGGCAACTGTCGCCAATTGGACATAGCCCCATGCCGAAAAAC
AACATTAAGTCGTTTCTCAGCCAGGTGCCGTTGCCGAACGCTATAGCAGC
CAAGTACCAAGAGCCAAGCGAACCAAGAGACGATGAGCAGCCCACGACAA
GCAAGGATGCGCTGGAGAGCAGCTCCTCGGTGCCCTCCGCCTCCGCCGCC
TACGCCTGCATCTGTTGCGAGCACAAGTGCCCGCTGGAGAAGGATTTCTT
GGAGTCGCAGTCGGACAAGGAGGGCGATCCGCCCTTTCTGGTGAACTCAC
CGTCGATGGCGCGTGACTCCAAAGACACAGTAACCGTTCAAATCGCGGCT
CCGCGCTGCAATTGTGCCAACTGCCCGCTGAGGAACCTCTATGACCCGCT
TTTCTCGGAGATCGTGGCGAAGGCGGAGGGGGCCATCGAGAATGGTGTGC
TGCCCGAGCGCATTTACCAGGGTAGCAGTGGTTCCTACTTTGTCAAGGAT
GCCTCCCATCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTA
TGGCAGACTGAATCCGAAGTGGACGAAATGGATGCATAAGCTGTGCTGCC
CGTGTTGTTTTGGCCGAGCTTGCTTGATTCCCAATCAGGGGTACCTCTCC
GAATCAGGAGCCAGCTTGGTTGATCGAAAACTCAATCTGAATGTGGTTCC
AAAGACGCGAGTGGTCAGATTGGTTGCCGAGAGCTTTAACTACGCACGCA
TTGATCGACAGAAGGCCAAGCTGAAGAAGCGCATTAAAGAGCACTATCCG
TCGGCTCACTTCAACCGAATGAGCCTTCCTCTAAAGACTGGCTCCTTTCA
GCTCTTCGTGGAGGGTTACAAGGATGCGGACTATTGGCTGCGGCGCTTTG
AAAGCGAACCCTTGCCGCCTTCAGTGGCGAAGTCGTTCCAACTGCAGTTC
GAGCGCCTCGTCGTGCTCGATTATATCATACGCAACACGGACCGTGGCAA
CGACAACTGGCTGATCAAGTACGTGGCCCCTAAGATCACGACCCAGGTGG
GAGGCACTGGCGGCAGAACTATGCACGGAGTTGTGACCCCCAAATTGCCC
AATGCGTTGGGGGCTTCAAAAATCGTTGACCTAAACGAGCCGCCGCAGGC
TAGCCCGAAACCGACTACTGGTGGTCGCCCTTCGAACCACCTAGCGGGTG
GAGCAGCCACAAGTGCACAGCAAGATAGCAGCAGTTTGGCCAGCAGCGAA
GATGAACCCTCGTCGAGATCCCCCCCTACGTCGGAACCCGATTGGAATGT
GGTGAACTCGGCCTTCATTCGGATCGCTGCCATCGACAATGGTCTCGCTT
TTCCCTTCAAGCATCCGGACTCTTGGCGAGCTTATCCCTACCATTGGGCC
TGGTTGCCACAGGCGAAAATTCCGTTTAGCGAAGAAATCAAGGAGCAGGT
GCTGCCGCAGTTGTCAGATATGAACTTTGTAGAGGAGATCTGCACGGAGT
TGTTGTACCTCTTCCAGCAGGATCGCGGCTTTGACAAGCGTCTCTTCGAG
CGCCAGATGTCGGTGATGCGGGGCCAGATTCTAAATCTCACACAGGCACT
GAGGGATGGCAAGTCGCCGGTGCAACTGGTCCAGATGCCAGCGGTGATTG
TCGAGCGATCAAGTGGCAGTCGTTTCTTCTCTTTTACGCAGCGCTTCCAA
AATAAGAGCCCTTTCTTCTCTTGGTGCTAAATGACCATGGAGCAGCCCCT
GCCGACCCCACCAAAAATCAAATCGAGCAGCCGGTTACTACAGTCTCATC
TTTTTCATCATGTATATGCGCTTAGTTGTTGTCTAGTATACTTCCAAATC
GTAATCACGGAGCACGGAGCCTAGAAATGTATTTTTTGCCAAAAAACTCA
AATGGTCATATTCAATAATTAATTACTTGTATTACTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

AT12695.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Pi4KIIalpha-RB 2565 Pi4KIIalpha-RB 1..2137 1..2137 10685 100 Plus
Pi4KIIalpha.c 2505 Pi4KIIalpha.c 1..2078 1..2078 10390 100 Plus
Pi4KIIalpha.d 3394 Pi4KIIalpha.d 1353..2899 591..2137 7735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1384158..1384980 1857..1035 4115 100 Minus
chr3R 27901430 chr3R 1386436..1387025 590..1 2950 100 Minus
chr3R 27901430 chr3R 1383751..1383961 2136..1926 1055 100 Minus
chr3R 27901430 chr3R 1385038..1385234 1036..840 985 100 Minus
chr3R 27901430 chr3R 1385328..1385461 843..710 670 100 Minus
chr3R 27901430 chr3R 1385734..1385852 709..591 595 100 Minus
chr3R 27901430 chr3R 1384026..1384095 1926..1857 350 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5558499..5559321 1857..1035 4115 100 Minus
3R 32079331 3R 5560777..5561366 590..1 2950 100 Minus
3R 32079331 3R 5558091..5558302 2137..1926 1060 100 Minus
3R 32079331 3R 5559379..5559575 1036..840 985 100 Minus
3R 32079331 3R 5559669..5559802 843..710 670 100 Minus
3R 32079331 3R 5560075..5560193 709..591 595 100 Minus
3R 32079331 3R 5558367..5558436 1926..1857 350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5299330..5300152 1857..1035 4115 100 Minus
3R 31820162 3R 5301608..5302197 590..1 2950 100 Minus
3R 31820162 3R 5298922..5299133 2137..1926 1060 100 Minus
3R 31820162 3R 5300210..5300406 1036..840 985 100 Minus
3R 31820162 3R 5300500..5300633 843..710 670 100 Minus
3R 31820162 3R 5300906..5301024 709..591 595 100 Minus
3R 31820162 3R 5299198..5299267 1926..1857 350 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:44:52 has no hits.

AT12695.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:45:44 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1383751..1383960 1927..2136 100 <- Minus
chr3R 1384026..1384094 1858..1926 100 <- Minus
chr3R 1384158..1384978 1037..1857 100 <- Minus
chr3R 1385038..1385233 841..1036 100 <- Minus
chr3R 1385331..1385461 710..840 100 <- Minus
chr3R 1385734..1385852 591..709 100 <- Minus
chr3R 1386436..1387025 1..590 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:45 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..1692 239..1930 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:41:37 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..1692 239..1930 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:48 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..1692 239..1930 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:01 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..1692 239..1930 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:36:36 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..2136 1..2136 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:45 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..2136 1..2136 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:41:37 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..2136 1..2136 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:49 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..2136 1..2136 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:01 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
Pi4KIIalpha-RB 1..2136 1..2136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:44 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5558092..5558301 1927..2136 100 <- Minus
3R 5558367..5558435 1858..1926 100 <- Minus
3R 5558499..5559319 1037..1857 100 <- Minus
3R 5559379..5559574 841..1036 100 <- Minus
3R 5559672..5559802 710..840 100 <- Minus
3R 5560075..5560193 591..709 100 <- Minus
3R 5560777..5561366 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:44 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5558092..5558301 1927..2136 100 <- Minus
3R 5558367..5558435 1858..1926 100 <- Minus
3R 5558499..5559319 1037..1857 100 <- Minus
3R 5559379..5559574 841..1036 100 <- Minus
3R 5559672..5559802 710..840 100 <- Minus
3R 5560075..5560193 591..709 100 <- Minus
3R 5560777..5561366 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:44 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5558092..5558301 1927..2136 100 <- Minus
3R 5558367..5558435 1858..1926 100 <- Minus
3R 5558499..5559319 1037..1857 100 <- Minus
3R 5559379..5559574 841..1036 100 <- Minus
3R 5559672..5559802 710..840 100 <- Minus
3R 5560075..5560193 591..709 100 <- Minus
3R 5560777..5561366 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:41:37 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1383814..1384023 1927..2136 100 <- Minus
arm_3R 1384089..1384157 1858..1926 100 <- Minus
arm_3R 1384221..1385041 1037..1857 100 <- Minus
arm_3R 1385101..1385296 841..1036 100 <- Minus
arm_3R 1385394..1385524 710..840 100 <- Minus
arm_3R 1385797..1385915 591..709 100 <- Minus
arm_3R 1386499..1387088 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:36:33 Download gff for AT12695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5298923..5299132 1927..2136 100 <- Minus
3R 5299198..5299266 1858..1926 100 <- Minus
3R 5299330..5300150 1037..1857 100 <- Minus
3R 5300210..5300405 841..1036 100 <- Minus
3R 5300503..5300633 710..840 100 <- Minus
3R 5300906..5301024 591..709 100 <- Minus
3R 5301608..5302197 1..590 100   Minus

AT12695.pep Sequence

Translation from 238 to 1929

> AT12695.pep
MPKNNIKSFLSQVPLPNAIAAKYQEPSEPRDDEQPTTSKDALESSSSVPS
ASAAYACICCEHKCPLEKDFLESQSDKEGDPPFLVNSPSMARDSKDTVTV
QIAAPRCNCANCPLRNLYDPLFSEIVAKAEGAIENGVLPERIYQGSSGSY
FVKDASHQCLAVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQ
GYLSESGASLVDRKLNLNVVPKTRVVRLVAESFNYARIDRQKAKLKKRIK
EHYPSAHFNRMSLPLKTGSFQLFVEGYKDADYWLRRFESEPLPPSVAKSF
QLQFERLVVLDYIIRNTDRGNDNWLIKYVAPKITTQVGGTGGRTMHGVVT
PKLPNALGASKIVDLNEPPQASPKPTTGGRPSNHLAGGAATSAQQDSSSL
ASSEDEPSSRSPPTSEPDWNVVNSAFIRIAAIDNGLAFPFKHPDSWRAYP
YHWAWLPQAKIPFSEEIKEQVLPQLSDMNFVEEICTELLYLFQQDRGFDK
RLFERQMSVMRGQILNLTQALRDGKSPVQLVQMPAVIVERSSGSRFFSFT
QRFQNKSPFFSWC*

AT12695.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11648-PA 678 GF11648-PA 171..677 36..562 1983 72.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10961-PA 705 GG10961-PA 263..704 119..562 2304 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22280-PA 756 GH22280-PA 309..755 119..562 1909 78.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pi4KIIalpha-PB 563 CG2929-PB 1..563 1..563 2991 100 Plus
Pi4KIIalpha-PC 710 CG2929-PC 266..710 119..563 2363 100 Plus
Pi4KIIalpha-PA 710 CG2929-PA 266..710 119..563 2363 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23086-PA 381 GI23086-PA 304..364 119..178 278 88.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22156-PA 594 GL22156-PA 22..593 32..562 2215 74.8 Plus
Dper\GL22153-PA 360 GL22153-PA 274..357 382..457 199 52.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15526-PC 595 GA15526-PC 22..594 32..562 2214 74.1 Plus
Dpse\GA15526-PA 719 GA15526-PA 277..718 119..562 2014 83.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10622-PA 382 GM10622-PA 1..381 182..562 2019 98.2 Plus
Dsec\GM10621-PA 173 GM10621-PA 1..172 1..172 878 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19607-PA 710 GD19607-PA 266..709 119..562 2369 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22707-PA 857 GJ22707-PA 327..856 35..562 2066 74.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13780-PA 838 GK13780-PA 279..837 16..562 2147 75.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24164-PA 704 GE24164-PA 262..703 119..562 2214 94.1 Plus

AT12695.hyp Sequence

Translation from 238 to 1929

> AT12695.hyp
MPKNNIKSFLSQVPLPNAIAAKYQEPSEPRDDEQPTTSKDALESSSSVPS
ASAAYACICCEHKCPLEKDFLESQSDKEGDPPFLVNSPSMARDSKDTVTV
QIAAPRCNCANCPLRNLYDPLFSEIVAKAEGAIENGVLPERIYQGSSGSY
FVKDASHQCLAVFKPKDEEPYGRLNPKWTKWMHKLCCPCCFGRACLIPNQ
GYLSESGASLVDRKLNLNVVPKTRVVRLVAESFNYARIDRQKAKLKKRIK
EHYPSAHFNRMSLPLKTGSFQLFVEGYKDADYWLRRFESEPLPPSVAKSF
QLQFERLVVLDYIIRNTDRGNDNWLIKYVAPKITTQVGGTGGRTMHGVVT
PKLPNALGASKIVDLNEPPQASPKPTTGGRPSNHLAGGAATSAQQDSSSL
ASSEDEPSSRSPPTSEPDWNVVNSAFIRIAAIDNGLAFPFKHPDSWRAYP
YHWAWLPQAKIPFSEEIKEQVLPQLSDMNFVEEICTELLYLFQQDRGFDK
RLFERQMSVMRGQILNLTQALRDGKSPVQLVQMPAVIVERSSGSRFFSFT
QRFQNKSPFFSWC*

AT12695.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pi4KIIalpha-PB 563 CG2929-PB 1..563 1..563 2991 100 Plus
Pi4KIIalpha-PC 710 CG2929-PC 266..710 119..563 2363 100 Plus
Pi4KIIalpha-PA 710 CG2929-PA 266..710 119..563 2363 100 Plus