Clone AT12704 Report

Search the DGRC for AT12704

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:127
Well:4
Vector:pOTB7
Associated Gene/TranscriptCG31010-RA
Protein status:AT12704.pep: validated not full length
Sequenced Size:1284

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12066 2002-01-01 Sim4 clustering to Release 2
CG31010 2002-01-11 Blastp of sequenced clone
CG31010 2003-01-01 Sim4 clustering to Release 3
CG31010 2008-04-29 Release 5.5 accounting
CG31010 2008-08-15 Release 5.9 accounting
CG31010 2008-12-18 5.12 accounting

Clone Sequence Records

AT12704.complete Sequence

1284 bp (1284 high quality bases) assembled on 2002-01-11

GenBank Submission: AY084117

> AT12704.complete
CTAAATTCAGAGTGCAGTTTCCAATATTTTATAAGTTTTAGGGTATCGTA
AATAGTCTGTTCTTTGGATCTGCGTGCTCAGATGAATCGTTGGCTTTTAA
AAGAGTGAAGAAAAATGTGAAAATGGGATGCCAAAGCTGTACATCCCTAG
TGACACATCCTAGTTATACAATTAGGCAACATTATCCAGGTCCTTTAATC
ACCTACGACGGGGAGGCGCGATGTGAGCCGCGTTTTATTCGATTTTCGGA
CTTAACCTTGAGCACAATGGAGCTTATCTTCAATGCTTATGGAGACAATG
ATGATGATGGAACGGATGAAATGAATGAAATGAATGAAGTGTGTGAAAAG
AAGGTAGATGTGGAGGAAAAGTGTGACAAGCAGAGAGAGGAGCCGGCGTG
TGGTAATCCAAGGAAGATCTTTGGCTGCCAAACAAATGCACCAATGCACA
ACTGTAGGTTGAATGGTGGCAGGGAGGAATCCGACTTGGCAGACGATTCA
CTCGTCGACAAGGAGCTCCGAGCCCTGGAGGATCGTGCCAGGGGTATATA
CGAAATACATATCGAATCTTTTCCAGATTCGCCGTCTTGGGACTGCCTGA
AACCTGCGGAGAAACTGCGCTTTCAATGGAAAGCTTCTACTGGAGATGAT
CTGATGAAAAGTCCTTATGAAAATTTCGCATTGAGTTTTACCAGAAGTTT
CCTCGAAGCTTTTCCCCTTGCCACATGTGCCACTGTTCGAAAGGAGGAAA
AAATCGCGTGGTGCAAGTTAGATCGCTGCCAGCGAATGCCGTTCATACTG
CAGGCTCTACTGTACCACGTCGCCATCGGTGCCATCGATCCCGAAGATCA
CTGTGCTGTTCGTGAACTTTTTCACAAGTTTGATAAAGTGAGAAGTGCGT
TTTCCATTTCCATTACCATTTCGATTTTATACGAACCAGATGTTGCGTGG
CCAGTCTATTTTGGTGCTGAGCCTCAAAATTCGCAGCTCTTTTCCTTCGA
CTTTTGCTCTTGAACCACATTTGTCGAGAATAATGGATCCCCTACTTTTG
GCCAAGGTCGCCCGCTGACTTGGCATTGGCACTCGATTAACAATTAAAGC
CGCAGCTCTCAAGGTCGCGCAGAATTAAGATGGAAAATCTCAAATGAATC
AGGGTCCCCCTGAGTAAAAGTTGGACTGGGTGCGAATCAATTTCGCATGC
GCATACATTAGCAATAAAAATTTGTAGTACCCCCTGAAACCGAAATAAAT
AAAACAAACGAGAAGCAAAAAAAAAAAAAAAAAA

AT12704.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31010-RA 1362 CG31010-RA 62..1331 1..1269 6265 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26527280..26528519 1266..40 5650 97.4 Minus
chr3R 27901430 chr3R 26528585..26528623 39..1 195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30704759..30705989 1269..40 6060 99.7 Minus
3R 32079331 3R 30706055..30706093 39..1 195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30445590..30446820 1269..40 6070 99.6 Minus
3R 31820162 3R 30446886..30446924 39..1 195 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:24:34 has no hits.

AT12704.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:25:18 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26527280..26528519 40..1266 97 <- Minus
chr3R 26528585..26528623 1..39 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:02:46 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..765 123..888 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:50:16 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..765 123..888 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:47:37 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..765 123..888 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:57 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..765 123..888 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:07 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..765 123..888 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:14:08 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..1267 1..1266 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:50:15 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..1267 1..1266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:47:37 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 29..1295 1..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:57 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 1..1267 1..1266 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:07 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG31010-RA 29..1295 1..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:18 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30704762..30705989 40..1266 99 <- Minus
3R 30706055..30706093 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:18 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30704762..30705989 40..1266 99 <- Minus
3R 30706055..30706093 1..39 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:18 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30704762..30705989 40..1266 99 <- Minus
3R 30706055..30706093 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:47:37 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26530484..26531711 40..1266 99 <- Minus
arm_3R 26531777..26531815 1..39 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:00 Download gff for AT12704.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30445593..30446820 40..1266 99 <- Minus
3R 30446886..30446924 1..39 100   Minus

AT12704.pep Sequence

Translation from 122 to 1012

> AT12704.pep
MGCQSCTSLVTHPSYTIRQHYPGPLITYDGEARCEPRFIRFSDLTLSTME
LIFNAYGDNDDDGTDEMNEMNEVCEKKVDVEEKCDKQREEPACGNPRKIF
GCQTNAPMHNCRLNGGREESDLADDSLVDKELRALEDRARGIYEIHIESF
PDSPSWDCLKPAEKLRFQWKASTGDDLMKSPYENFALSFTRSFLEAFPLA
TCATVRKEEKIAWCKLDRCQRMPFILQALLYHVAIGAIDPEDHCAVRELF
HKFDKVRSAFSISITISILYEPDVAWPVYFGAEPQNSQLFSFDFCS*

AT12704.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23313-PA 334 GF23313-PA 192..333 115..253 393 50 Plus
Dana\GF23313-PA 334 GF23313-PA 15..61 9..55 149 57.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11915-PA 273 GG11915-PA 1..272 1..253 848 58 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14102-PA 225 GH14102-PA 29..224 14..253 260 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31010-PB 254 CG31010-PB 1..252 1..252 1374 100 Plus
CG31010-PA 254 CG31010-PA 1..252 1..252 1374 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10634-PA 239 GI10634-PA 32..238 14..253 293 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13991-PA 367 GL13991-PA 217..363 98..253 275 41.4 Plus
Dper\GL13991-PA 367 GL13991-PA 51..95 9..53 150 62.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15935-PA 352 GA15935-PA 51..348 9..253 369 33.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12135-PA 264 GM12135-PA 1..263 1..253 1053 78.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16869-PA 264 GD16869-PA 1..263 1..253 1059 79.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22990-PA 232 GJ22990-PA 9..231 5..253 334 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13112-PA 209 GK13112-PA 111..208 156..253 254 41.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23364-PA 282 GE23364-PA 1..281 1..253 880 59 Plus

AT12704.hyp Sequence

Translation from 122 to 885

> AT12704.hyp
MGCQSCTSLVTHPSYTIRQHYPGPLITYDGEARCEPRFIRFSDLTLSTME
LIFNAYGDNDDDGTDEMNEMNEVCEKKVDVEEKCDKQREEPACGNPRKIF
GCQTNAPMHNCRLNGGREESDLADDSLVDKELRALEDRARGIYEIHIESF
PDSPSWDCLKPAEKLRFQWKASTGDDLMKSPYENFALSFTRSFLEAFPLA
TCATVRKEEKIAWCKLDRCQRMPFILQALLYHVAIGAIDPEDHCAVRELF
HKLR*

AT12704.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31010-PB 254 CG31010-PB 1..254 1..254 1383 100 Plus
CG31010-PA 254 CG31010-PA 1..254 1..254 1383 100 Plus