Clone AT12771 Report

Search the DGRC for AT12771

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:127
Well:71
Vector:pOTB7
Associated Gene/TranscriptTsp33B-RA
Protein status:AT12771.pep: gold
Preliminary Size:981
Sequenced Size:1129

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14936 2002-01-01 Sim4 clustering to Release 2
CG14936 2002-01-11 Blastp of sequenced clone
CG14936 2003-01-01 Sim4 clustering to Release 3
Tsp33B 2008-04-29 Release 5.5 accounting
Tsp33B 2008-08-15 Release 5.9 accounting
Tsp33B 2008-12-18 5.12 accounting

Clone Sequence Records

AT12771.complete Sequence

1129 bp (1129 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075178

> AT12771.complete
GTTCAGAGCTAAAACCTCGTCGACAAGCCAAACTTTGGATCGATGCCCAC
GAGGATGACCAAATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACCTCCA
CCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTGGTGA
CCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGAGTGC
CGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCCAGGT
GGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGGCGGC
GTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTTCTAC
TCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTTACCG
GGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGCGGCA
TCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGGACTG
CAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGATGAA
CGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTCCTGG
CACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAATTTC
CTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTTTTCC
CGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCGTTCG
TTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGTCCTG
GCCCTTAAGTTTCTGATCGTGCTTTGTTGTATGACCAAGTTCATAGTTCA
CCGGCAGAACGAGGGCGATGGCTGCGATAATGTGGGGCTCACGGACGATG
ATGGCCATCCCTTGGTCGTGGTGAAATATCCGTGCAACGTGCGCTGTGTG
ACAATTGCCGAGGATGATCTGGTATCCGACAACGTTCCCGATATTAACTA
CTGCAATTGCACCGAAATGGACGACGAACCGTGTGGATACTAATATTGTG
CTTAATTTTACTTTTATATTTTATATTAATTTAATTAAATTTACGAATTT
GAGTTAACTTCAAAAAAAAAAAAAAAAAA

AT12771.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 1152 Tsp33B-RA 42..1152 1..1111 5495 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11790185..11790999 815..1 4075 100 Minus
chr2L 23010047 chr2L 11789659..11789847 1111..923 945 100 Minus
chr2L 23010047 chr2L 11789902..11790010 923..815 545 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791551..11792365 815..1 4075 100 Minus
2L 23513712 2L 11791024..11791213 1112..923 920 98.9 Minus
2L 23513712 2L 11791268..11791376 923..815 515 98.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791551..11792365 815..1 4075 100 Minus
2L 23513712 2L 11791024..11791213 1112..923 920 98.9 Minus
2L 23513712 2L 11791268..11791376 923..815 515 98.1 Minus
Blast to na_te.dros performed on 2019-03-16 09:11:15 has no hits.

AT12771.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:12:18 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11789902..11790009 816..923 100 <- Minus
chr2L 11790185..11790999 1..815 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:02:55 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..981 63..1043 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:59 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..981 63..1043 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:55:07 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..981 63..1043 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:47 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..981 63..1043 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:50 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..981 63..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:53 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..1111 1..1111 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:59 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..1111 1..1111 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:07 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..1111 1..1111 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:48 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..1111 1..1111 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:50 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..1111 1..1111 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:18 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11791025..11791212 924..1111 98 <- Minus
2L 11791268..11791375 816..923 98 <- Minus
2L 11791551..11792365 1..815 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:18 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11791025..11791212 924..1111 98 <- Minus
2L 11791268..11791375 816..923 98 <- Minus
2L 11791551..11792365 1..815 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:12:18 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11791025..11791212 924..1111 98 <- Minus
2L 11791268..11791375 816..923 98 <- Minus
2L 11791551..11792365 1..815 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:07 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11791025..11791212 924..1111 98 <- Minus
arm_2L 11791268..11791375 816..923 98 <- Minus
arm_2L 11791551..11792365 1..815 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:49 Download gff for AT12771.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11791551..11792365 1..815 100   Minus
2L 11791268..11791375 816..923 98 <- Minus
2L 11791025..11791212 924..1111 98 <- Minus

AT12771.hyp Sequence

Translation from 2 to 1042

> AT12771.hyp
SELKPRRQAKLWIDAHEDDQMRQPFRRASVYLHLLLITEAVIGLLILVVT
AYYHTVLTGYLSDIECRLVYGYLFGIYVFGAQVVVTFLCSIAMWRRIWRR
RCTPNIRLLLSVWAFYSCVIIASGFGCVWNLYRGVDVLENAADTSLTRGI
DMYYSCPEWKLLWDGLQWHKECCGVHGYKDWMNAEWMPRRENNCTSMVLA
PFACCKRSCDSCFNNFLPSEGQSIGGNSRQPFPALTVDSINANGCLPAFV
SAVWNCFYILMALWVLALKFLIVLCCMTKFIVHRQNEGDGCDNVGLTDDD
GHPLVVVKYPCNVRCVTIAEDDLVSDNVPDINYCNCTEMDDEPCGY*

AT12771.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-PA 326 CG14936-PA 1..326 21..346 1817 100 Plus

AT12771.pep Sequence

Translation from 62 to 1042

> AT12771.pep
MRQPFRRASVYLHLLLITEAVIGLLILVVTAYYHTVLTGYLSDIECRLVY
GYLFGIYVFGAQVVVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVI
IASGFGCVWNLYRGVDVLENAADTSLTRGIDMYYSCPEWKLLWDGLQWHK
ECCGVHGYKDWMNAEWMPRRENNCTSMVLAPFACCKRSCDSCFNNFLPSE
GQSIGGNSRQPFPALTVDSINANGCLPAFVSAVWNCFYILMALWVLALKF
LIVLCCMTKFIVHRQNEGDGCDNVGLTDDDGHPLVVVKYPCNVRCVTIAE
DDLVSDNVPDINYCNCTEMDDEPCGY*

AT12771.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15335-PA 321 GF15335-PA 1..318 1..324 1305 73.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10299-PA 317 GG10299-PA 1..316 1..318 1579 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10369-PA 326 GH10369-PA 1..323 1..326 1027 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-PA 326 CG14936-PA 1..326 1..326 1817 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21380-PA 664 GI21380-PA 1..323 1..326 1101 60.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18810-PA 612 GL18810-PA 1..331 1..326 1187 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13363-PA 331 GA13363-PA 1..331 1..326 1175 63.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10990-PA 326 GM10990-PA 1..326 1..326 1710 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22159-PA 326 GD22159-PA 1..326 1..326 1717 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11175-PA 675 GJ11175-PA 1..328 1..323 1102 62.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24499-PA 334 GK24499-PA 1..331 1..326 1212 71 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12709-PA 324 GE12709-PA 1..324 1..326 1643 93.9 Plus