Clone AT12868 Report

Search the DGRC for AT12868

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:128
Well:68
Vector:pOTB7
Associated Gene/TranscriptCG31819-RA
Protein status:AT12868.pep: gold
Sequenced Size:1711

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12455 2002-01-01 Sim4 clustering to Release 2
CG31819 2002-01-11 Blastp of sequenced clone
CG31819 2003-01-01 Sim4 clustering to Release 3
CG31819 2008-04-29 Release 5.5 accounting
CG31819 2008-08-15 Release 5.9 accounting
CG31819 2008-12-18 5.12 accounting

Clone Sequence Records

AT12868.complete Sequence

1711 bp (1711 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075181

> AT12868.complete
GAGACTTTGACCTAATACTCAACTAAATTTCGATTGATAGAAACTAGTAC
ACTATAGGCAAATTAAAAAGGACTTTAATTTTCTATTATCCTTTTTTATA
CTTATAGCGTATAGGTTTAGGTCTCCGGTATGTTGAGCCGTAGTCCTAGA
CTATTGAAGAATCCAGAGAGGAAACAGCGTCTGCCAAAATTCCAAGTTGG
AAACGGATCGGTGATCGAGATGGAAGCTCCTCGAAATAACCGTCGAATCC
ATCAGGTCGCCCAAATTGGAGACGGTTTGACTACCCCTTTGGAAAGTCCA
TCGAACAACTATTCATCTGATAGATCCCTTCCCCAAACGAAACTTGAGGA
GGGAGAACAGGATGTAGACTACTGGGAGTTAAAGAAGGTTTTTCAAAAAC
TTGACCTCTCCGACCAGATCGTCCTCTACCGCTCCTTTCGTCTCCTTCCC
GCCGCCTGCTACACCCTTTGGCGAAGTACAAGGAAACGGCTCGACTTCCG
CACTCTTCATAAGGATCTTGGCGAGGAATCCCAGAGACATCTTATCGTTC
ACATGAAGGATCATTTTAAGTACGTTTACTTCGTCGCAGATAGACTGCAG
GAAAACCTTAATGTTTTGGAAAAAGCAGGAGTCAAGTCGATAGTATCTGT
TCAACGCTGCGAACTGCTGATGGAAGAAAAGGTTAAGTCTAGCAGTCAAC
AATCTGGAGAAGATTTTGGTGGAAATAGAATGGCTCAGTGGCCACTGCAT
GCTCTTCCCAAATTGATGAGAAATTTGCGCCGTCTGACGGCCGATTGTGA
AATCCAGGTGCACTTCATCGAACATTTTAAGGAACTGGAGTTACTAGTGC
TCAATGGATTCATTTCGCAGACTGCTCTCACTGGGATCTTAGAGCGGTGC
CACAAATTGACCAGATTATTTCTTCGATTCGATTGCGATACACTGAGCTT
GAAGCTCATTGATAAGTGTTCCAATCTGAGAGACCTATCGTTGACCACAG
GACTGTTTTTTCACCAAAAGGACCTTGTCATGAAACTGACTGATCTTCGA
CTGTTGGAGTTAACACAATGTGAAACGAGAAGTCAGCTGACACTTGAGTG
CATGCAATTTATACTGAATAGACGGAAAGATTCTGTGCAACTGATTCAAA
TAGATTGCAAAGGCTTTCAGGATCCCAATTGGATGAAGGAGGTCGGGTTG
GATCGGTGCTCTCGATTGCGGGGATTGGTCCTGGCAAACTGCTACTTCTG
CGACCGCGAGATTAGCCGGCTCTTGTTTCCAAGAGTTCAGAAATACATTG
CTCTAATTAATTGCCCTGATATTAAGGACTACCAGTTGATAGATATGGTG
CGAATGTGTCCCGGTCTCAACGATATCTACTTGCTGGACTGTCCCCAGTT
GAGCTGGAAGGTCCTTCAAGGTATTTACCGAATCCGGAGGAGTGAAAATC
TTAGCTATCCCATTACCATTATCCTCAGTCAACACTCTGAACTCAGGGAT
GCCTATCAGTCCATGTACTCAAACTTCTGGTGCTTCAAGCTCCCTTTCCT
CAGAATGGAACGCGTAATTCATCAATGTCGACCGATTAGAGATATTCAAT
TTTTTTTCAATAGCAGCGAATAGTACTGTAGAGTTATAGTATCCATAGCT
GTTTTACAAATATTCTAAATAAATATATATATTTTTCTCCAAAAAAAAAA
AAAAAAAAAAA

AT12868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-RA 1693 CG31819-RA 1..1693 1..1693 8465 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16210958..16211874 599..1515 4585 100 Plus
chr2L 23010047 chr2L 16210301..16210901 1..601 3005 100 Plus
chr2L 23010047 chr2L 16211971..16212146 1515..1690 865 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16212116..16213032 599..1515 4585 100 Plus
2L 23513712 2L 16211459..16212059 1..601 3005 100 Plus
2L 23513712 2L 16213129..16213307 1515..1693 895 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16212116..16213032 599..1515 4585 100 Plus
2L 23513712 2L 16211459..16212059 1..601 3005 100 Plus
2L 23513712 2L 16213129..16213307 1515..1693 895 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:16:42 has no hits.

AT12868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:17:25 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16210301..16210900 1..600 100 -> Plus
chr2L 16210960..16211874 601..1515 100 -> Plus
chr2L 16211972..16212113 1516..1657 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:01 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1494 130..1623 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:45 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1494 130..1623 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:25:16 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1494 130..1623 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:40 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1494 130..1623 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:34 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1494 130..1623 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:40 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:45 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:25:16 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:41 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1690 1..1690 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:34 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
CG31819-RA 1..1690 1..1690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:25 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16211459..16212058 1..600 100 -> Plus
2L 16212118..16213032 601..1515 100 -> Plus
2L 16213130..16213304 1516..1690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:25 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16211459..16212058 1..600 100 -> Plus
2L 16212118..16213032 601..1515 100 -> Plus
2L 16213130..16213304 1516..1690 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:25 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16211459..16212058 1..600 100 -> Plus
2L 16212118..16213032 601..1515 100 -> Plus
2L 16213130..16213304 1516..1690 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:25:16 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16211459..16212058 1..600 100 -> Plus
arm_2L 16212118..16213032 601..1515 100 -> Plus
arm_2L 16213130..16213304 1516..1690 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:40 Download gff for AT12868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16211459..16212058 1..600 100 -> Plus
2L 16212118..16213032 601..1515 100 -> Plus
2L 16213130..16213304 1516..1690 100   Plus

AT12868.pep Sequence

Translation from 129 to 1622

> AT12868.pep
MLSRSPRLLKNPERKQRLPKFQVGNGSVIEMEAPRNNRRIHQVAQIGDGL
TTPLESPSNNYSSDRSLPQTKLEEGEQDVDYWELKKVFQKLDLSDQIVLY
RSFRLLPAACYTLWRSTRKRLDFRTLHKDLGEESQRHLIVHMKDHFKYVY
FVADRLQENLNVLEKAGVKSIVSVQRCELLMEEKVKSSSQQSGEDFGGNR
MAQWPLHALPKLMRNLRRLTADCEIQVHFIEHFKELELLVLNGFISQTAL
TGILERCHKLTRLFLRFDCDTLSLKLIDKCSNLRDLSLTTGLFFHQKDLV
MKLTDLRLLELTQCETRSQLTLECMQFILNRRKDSVQLIQIDCKGFQDPN
WMKEVGLDRCSRLRGLVLANCYFCDREISRLLFPRVQKYIALINCPDIKD
YQLIDMVRMCPGLNDIYLLDCPQLSWKVLQGIYRIRRSENLSYPITIILS
QHSELRDAYQSMYSNFWCFKLPFLRMERVIHQCRPIRDIQFFFNSSE*

AT12868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22607-PA 550 GF22607-PA 93..529 76..493 1278 56.8 Plus
Dana\GF16757-PA 437 GF16757-PA 35..431 87..494 466 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25193-PA 500 GG25193-PA 1..500 1..497 2045 77.4 Plus
Dere\GG22648-PA 434 GG22648-PA 1..429 54..497 432 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12725-PA 429 GH12725-PA 25..412 90..468 847 42.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-PA 497 CG31819-PA 1..497 1..497 2608 100 Plus
CG14316-PA 430 CG14316-PA 1..411 54..477 420 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15974-PA 1073 GI15974-PA 631..1069 76..496 1094 46.5 Plus
Dmoj\GI23714-PA 430 GI23714-PA 33..389 87..455 475 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12943-PA 401 GL12943-PA 52..376 166..495 593 35.5 Plus
Dper\GL12589-PA 435 GL12589-PA 27..428 83..495 515 28.8 Plus
Dper\GL14078-PA 294 GL14078-PA 1..127 113..235 197 36.2 Plus
Dper\GL25470-PA 146 GL25470-PA 27..130 83..186 169 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22907-PA 490 GA22907-PA 72..463 108..493 696 36.4 Plus
Dpse\GA27566-PA 435 GA27566-PA 11..428 67..495 518 28.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18656-PA 496 GM18656-PA 1..496 1..497 2405 90.7 Plus
Dsec\GM15278-PA 434 GM15278-PA 1..413 54..479 427 27.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24042-PA 185 GD24042-PA 1..184 1..184 879 90.2 Plus
Dsim\GD19201-PA 408 GD19201-PA 1..395 54..460 411 27.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18872-PA 468 GJ18872-PA 24..464 74..496 1141 48.8 Plus
Dvir\GJ23273-PA 431 GJ23273-PA 33..378 87..444 492 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20153-PA 511 GK20153-PA 50..501 64..493 1194 51.9 Plus
Dwil\GK11243-PA 441 GK11243-PA 25..437 80..496 526 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21354-PA 502 GE21354-PA 1..502 1..497 2138 80.3 Plus
Dyak\GE25512-PA 434 GE25512-PA 1..413 54..479 443 28.4 Plus

AT12868.hyp Sequence

Translation from 129 to 1622

> AT12868.hyp
MLSRSPRLLKNPERKQRLPKFQVGNGSVIEMEAPRNNRRIHQVAQIGDGL
TTPLESPSNNYSSDRSLPQTKLEEGEQDVDYWELKKVFQKLDLSDQIVLY
RSFRLLPAACYTLWRSTRKRLDFRTLHKDLGEESQRHLIVHMKDHFKYVY
FVADRLQENLNVLEKAGVKSIVSVQRCELLMEEKVKSSSQQSGEDFGGNR
MAQWPLHALPKLMRNLRRLTADCEIQVHFIEHFKELELLVLNGFISQTAL
TGILERCHKLTRLFLRFDCDTLSLKLIDKCSNLRDLSLTTGLFFHQKDLV
MKLTDLRLLELTQCETRSQLTLECMQFILNRRKDSVQLIQIDCKGFQDPN
WMKEVGLDRCSRLRGLVLANCYFCDREISRLLFPRVQKYIALINCPDIKD
YQLIDMVRMCPGLNDIYLLDCPQLSWKVLQGIYRIRRSENLSYPITIILS
QHSELRDAYQSMYSNFWCFKLPFLRMERVIHQCRPIRDIQFFFNSSE*

AT12868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31819-PA 497 CG31819-PA 1..497 1..497 2608 100 Plus
CG14316-PA 430 CG14316-PA 1..411 54..477 420 28.1 Plus