Clone AT12891 Report

Search the DGRC for AT12891

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:128
Well:91
Vector:pOTB7
Associated Gene/TranscriptCG14658-RA
Protein status:AT12891.pep: gold
Preliminary Size:7689
Sequenced Size:1226

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14658 2003-01-01 Sim4 clustering to Release 3
CG14658 2008-04-29 Release 5.5 accounting
gpp 2008-08-15 Release 5.9 accounting
CG14658 2008-08-15 Release 5.9 accounting
gpp 2008-12-18 5.12 accounting
CG14658 2008-12-18 5.12 accounting

Clone Sequence Records

AT12891.complete Sequence

1226 bp (1226 high quality bases) assembled on 2004-05-03

GenBank Submission: BT014671

> AT12891.complete
TAAACGTGTCCTCCTTGCTGACAGTGACGTGCTTAAGCATCTGCTGCACC
AGCTCATAGCTCGTCTCGCCGTAAACCTCTGGCGAGAAGGGCTCGTACTG
GTTGAGTTTATCCGGATCGAGTACGGCGGCATTGTAAACTAATTGCAATA
TGTGTCTTAGAAGGCTAGGGTGAGCGAACTTGTTCAGGCGCTCGGCGGGC
AGTGAAGTTCCTTTTTCCAATGCAACGATACTGTCGACGGCCTTGTTGAA
GCGATCGACCAGACCGGTCATAGTCTTATAGCAGGCAGTGTCAATTTGGT
GGAGATTGGTTTCCTCGAAGGCCGATGACATCGATGGCAGTTCATCGCAG
ACGAACTTAATGGTGTCGATGATGTCGATGCCATTGTCGTGCTTATCCTG
TCCGTGTCCGATCTGCAGGGGCCAGGCGAAGGAAATGACATCGGAGGAGC
CAGCGGGCGAGCGCAACACCAAGTCCTTGACTTGGGGTGTGGCCATATTT
TTCCGCTTTCCTTAGCCTTAGCCAGCCTTTTTTTTTATTATTTTTGTCTA
TTTTGTTGTGTTTTTGGTGTGCGTGACAAAGGGGCGCCTCGTGCCGAATT
CGGCACGAGGCAAGCATATAATTCCACTCAATAATGATTTCAAAGATCAA
GATCTGGAGCCGCTCGCCACTGATTCCGGCTAGGGATCACGGTTCAGCGA
TCCTTCCGCCGGCAGATCGGCCAGATCCCATTCCGGAGCTGTGCGAGGAA
AGGCCGGTGATGGGTTGGCTGCTCGGCTGGGAGTACGGGAGGAAGTGGCT
GGAGAGGCGCGAGGAGATCCAGAGGCACCGCAACATGGTCAGCAAGTTCG
GCAGGATCCCGGCGGACTTCAGCTGGTGGCTCAACCAGCGCAGGCCCCTC
TATGTGCGCCAACAGCGATTCCGGAGCAAGGCCGGACCTCGTGCCCGGAA
ACAGATAACGGCCTTCGAGATGGCCAAGCGGAGGCGTGAGGAGCAGAACC
GCAAGCTATTGGAGAGCCAGCCCAAAAACCAGTAAAACACACACTCAAAA
TGTCCAACATGCCAATCGAAGGGTAAACTCTGTCAAAATTGCTAAGCCAA
ACAACTGTATATGTACGAGTACAACATTGCAATCGTTGTACAAAGAACTC
CCTATGATGATGCGCCAATAAACACGGTTAGAATGCTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

AT12891.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
gpp.b 7084 gpp.b 1136..1721 586..1 2930 100 Minus
gpp-RA 7359 gpp-RA 1411..1996 586..1 2930 100 Minus
gpp.c 7307 gpp.c 1359..1944 586..1 2930 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 655607..656184 1188..611 2875 99.8 Minus
chr3R 27901430 chr3R 2263288..2263657 586..217 1850 100 Minus
chr3R 27901430 chr3R 2263901..2264118 218..1 1090 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4829909..4830488 1190..611 2885 99.8 Minus
3R 32079331 3R 6437566..6437935 586..217 1850 100 Minus
3R 32079331 3R 6438179..6438396 218..1 1090 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4570740..4571319 1190..611 2885 99.8 Minus
3R 31820162 3R 6178397..6178766 586..217 1850 100 Minus
3R 31820162 3R 6179010..6179227 218..1 1090 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:27:12 has no hits.

AT12891.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:28:25 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 655607..656184 611..1188 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:03 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
CG14658-RA 1..402 634..1035 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:28 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
CG14658-RA 1..402 634..1035 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:47:52 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
CG14658-RA 1..402 634..1035 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:17 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
CG14658-RA 1..402 634..1035 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:20 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
CG14658-RA 1..402 634..1035 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:43:38 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
gpp-RB 1733..2326 1..594 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:28 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
gpp-RD 1366..1959 1..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:47:52 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
gpp-RB 1366..1959 1..594 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:17 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
gpp-RB 1733..2326 1..594 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:20 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
gpp-RB 1366..1959 1..594 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:25 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4829911..4830488 611..1188 99 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:25 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4829911..4830488 611..1188 99 == Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:25 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4829911..4830488 611..1188 99 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:47:52 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 655633..656210 611..1188 99 == Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:36 Download gff for AT12891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4570742..4571319 611..1188 99 == Minus

AT12891.pep Sequence

Translation from 633 to 1034

> AT12891.pep
MISKIKIWSRSPLIPARDHGSAILPPADRPDPIPELCEERPVMGWLLGWE
YGRKWLERREEIQRHRNMVSKFGRIPADFSWWLNQRRPLYVRQQRFRSKA
GPRARKQITAFEMAKRRREEQNRKLLESQPKNQ*

AT12891.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16083-PA 169 GF16083-PA 1..106 2..107 329 56.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11311-PA 133 GG11311-PA 1..133 1..133 635 92.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14658-PA 133 CG14658-PA 1..133 1..133 719 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14692-PA 170 GI14692-PA 12..133 5..130 152 31.8 Plus
Dmoj\GI11504-PA 198 GI11504-PA 3..121 6..118 150 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22216-PA 139 GL22216-PA 6..135 7..133 343 54.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13153-PA 139 GA13153-PA 1..129 2..127 349 55.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10674-PA 133 GM10674-PA 1..133 1..133 668 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19649-PA 133 GD19649-PA 1..133 1..133 668 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16600-PA 164 GJ16600-PA 6..135 8..131 160 36.8 Plus
Dvir\GJ17142-PA 201 GJ17142-PA 25..125 25..122 139 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18969-PA 126 GK18969-PA 6..124 6..121 134 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25325-PA 133 GE25325-PA 1..133 1..133 650 94.7 Plus

AT12891.hyp Sequence

Translation from 633 to 1034

> AT12891.hyp
MISKIKIWSRSPLIPARDHGSAILPPADRPDPIPELCEERPVMGWLLGWE
YGRKWLERREEIQRHRNMVSKFGRIPADFSWWLNQRRPLYVRQQRFRSKA
GPRARKQITAFEMAKRRREEQNRKLLESQPKNQ*

AT12891.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14658-PA 133 CG14658-PA 1..133 1..133 719 100 Plus