Clone AT13107 Report

Search the DGRC for AT13107

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:131
Well:7
Vector:pOTB7
Associated Gene/TranscriptRcd-1r-RA
Protein status:AT13107.pep: gold
Preliminary Size:997
Sequenced Size:1222

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9573 2002-01-01 Sim4 clustering to Release 2
CG9573 2002-01-11 Blastp of sequenced clone
CG9573 2003-01-01 Sim4 clustering to Release 3
CG9573 2008-04-29 Release 5.5 accounting
CG9573 2008-08-15 Release 5.9 accounting
CG9573 2008-12-18 5.12 accounting

Clone Sequence Records

AT13107.complete Sequence

1222 bp (1222 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075185

> AT13107.complete
GTCCTTTCTCGCTTGAAGCTTATATCGATAACCACAATAGACGCCAACTC
GAAACCACGTTTCTCAATCGTCCGTCGAAATTCCGGAGCCAGATCTTTCC
AAGCTACTAGATCTTTGCAAGCTAACGCGAAAAAAAACCAGCTTTGCGAT
GAGTGCGGAACCAAGTCCGGTAATGAGTCCCCAGCAGCAGGCCGAGCGGG
AGAAGGTGTACCAGTTGATCATCGAGCTGGCCTATCCTGCCACGCGGGAG
ACCGCTCTGCTGGAGCTGAGCAAGAACACCTATGCGGACCTGGCCCCCAT
GCTGTGGAAAAGCGTCGGTACCACCTGCACCCTGCTGCAGGAGATCGTCA
ACATATACCCCATAATAACGACGCCCGTTTTGAAGGCCAACCAGTCGAAC
CGCGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCTCGCATCCGGA
GACTCGCCCGGCCTTCCTGCGGGACCAGATACCGATGTACTTGTACCCCT
TCTTGTCGACCACGTTCAAGAGCAGGCCCTTCGAGCAGCTGCGCCTGACC
ACGCTGGGCGTGATTAATGCTCTGGCCGAGACCGGTGATACGGAGGTCCT
CATCTTCCTGATATGGAGCGAGGTCGTGCCTCACTGTCTGACCAATATGG
TCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCAATCCTTGAGAAG
ATACTGCTCGATGAGATGGGTCTGACGTACATTTGCGAGAACCACGATCG
CTTCTCGCAGGTGGCCATCACCCTGGGCAAAATGGTCATCCATATGTTGA
AGTTTCCATGCCTCCGGGTGCTGAAGCATGTGGTGCGCTGCTATCTACTA
CTTACGGAAAATGCGCGCGCTCGCAGTGCACTTAGAGTGTGTCTGCCCGA
TCTGCTGCGTGACGGCACCTTCACGTCGCTCGTCCAACATGACACGTGCA
CCAAGCAGTGGCTGCAGATGCTGCTCAAGAACCTGCAGACAAACGCCGTC
AACCCAATGGGCTCCTCCTAGAGAAGCGCCCAACAACTTTCGTCACTCCA
CCGTCCATTCAAGCGCCATCGATTAGTGATACCCACTCCTAGTTAACTGC
TCGACCGAATAAACATGGCCTACATAATCTACAAATGAAATTATGATATT
ACTAAAATTGACGGTACAATAAAAAATATCAAATATAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

AT13107.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102.a 1984 CG13102.a 714..1903 1190..1 5920 99.8 Minus
CG13102-RA 1833 CG13102-RA 563..1752 1190..1 5920 99.8 Minus
CG9573-RA 1186 CG9573-RA 1..1186 1..1186 5900 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9011783..9012968 1186..1 5915 99.9 Minus
chrX 22417052 chrX 19528235..19528606 204..575 1020 84.9 Plus
chrX 22417052 chrX 19528725..19528882 619..776 340 81 Plus
chrX 22417052 chrX 19529092..19529210 867..985 280 82.4 Plus
chrX 22417052 chrX 19528938..19529025 775..862 215 83 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012881..9014070 1190..1 5920 99.8 Minus
X 23542271 X 19639444..19639815 204..575 1020 84.9 Plus
X 23542271 X 19639934..19640091 619..776 340 81 Plus
X 23542271 X 19640301..19640419 867..985 280 82.4 Plus
X 23542271 X 19640147..19640234 775..862 215 83 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012881..9014070 1190..1 5920 99.8 Minus
X 23527363 X 19647623..19647913 285..575 870 86.5 Plus
X 23527363 X 19648032..19648189 619..776 340 81 Plus
X 23527363 X 19647542..19647614 204..276 215 86.3 Plus
X 23527363 X 19648245..19648332 775..862 215 82.9 Plus
X 23527363 X 19648482..19648517 950..985 180 100 Plus
X 23527363 X 19648399..19648453 867..921 155 85.4 Plus
Blast to na_te.dros performed on 2019-03-16 15:56:37 has no hits.

AT13107.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:57:37 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9011783..9012968 1..1186 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:22 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 1..873 149..1021 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:51 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 1..873 149..1021 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:54 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd-1r-RA 1..873 149..1021 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:44 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 1..873 149..1021 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:57:05 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd-1r-RA 1..873 149..1021 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:13:47 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 566..1751 1..1186 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:51 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 1..1186 1..1186 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:54 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 571..1756 1..1186 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:44 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 566..1751 1..1186 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:57:05 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 571..1756 1..1186 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:37 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012885..9014070 1..1186 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:37 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012885..9014070 1..1186 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:57:37 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012885..9014070 1..1186 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:54 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012885..9014070 1..1186 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:44 Download gff for AT13107.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012885..9014070 1..1186 99   Minus

AT13107.hyp Sequence

Translation from 148 to 1020

> AT13107.hyp
MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP
MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP
ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV
LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD
RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP
DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSS*

AT13107.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-PA 290 CG9573-PA 1..290 1..290 1490 100 Plus
Rcd-1-PA 304 CG14213-PA 1..304 1..289 976 65.5 Plus
Rcd-1-PB 304 CG14213-PB 1..304 1..289 976 65.5 Plus
Rcd-1-PC 301 CG14213-PC 1..301 1..289 954 64.5 Plus
CG2053-PB 298 CG2053-PB 3..258 6..258 343 34.4 Plus

AT13107.pep Sequence

Translation from 148 to 1020

> AT13107.pep
MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP
MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP
ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV
LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD
RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP
DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSS*

AT13107.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20275-PA 304 GF20275-PA 1..304 1..289 986 65.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19241-PA 297 GG19241-PA 1..297 1..289 977 66.7 Plus
Dere\GG11840-PA 299 GG11840-PA 4..282 7..285 361 33.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24151-PA 304 GH24151-PA 1..293 1..290 976 66.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-PA 290 CG9573-PA 1..290 1..290 1490 100 Plus
Rcd-1-PA 304 CG14213-PA 1..304 1..289 976 65.5 Plus
Rcd-1-PB 304 CG14213-PB 1..304 1..289 976 65.5 Plus
Rcd-1-PC 301 CG14213-PC 1..301 1..289 954 64.5 Plus
CG2053-PB 298 CG2053-PB 3..258 6..258 343 34.4 Plus
CG2053-PA 298 CG2053-PA 3..258 6..258 343 34.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21711-PA 306 GI21711-PA 1..295 1..290 1000 66.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27101-PA 296 GL27101-PA 1..296 1..289 1011 67.2 Plus
Dper\GL23452-PA 331 GL23452-PA 12..267 15..266 367 32.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12828-PA 296 GA12828-PA 1..296 1..289 1011 67.2 Plus
Dpse\GA27260-PA 302 GA27260-PA 12..257 15..258 371 33.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12572-PA 297 GM12572-PA 1..283 1..283 1150 75.3 Plus
Dsec\GM22976-PA 299 GM22976-PA 1..299 1..289 990 66.6 Plus
Dsec\GM16460-PA 298 GM16460-PA 6..258 9..258 336 33.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22367-PA 297 GD22367-PA 1..283 1..283 1141 73.1 Plus
Dsim\GD21611-PA 298 GD21611-PA 6..258 9..258 340 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15574-PA 302 GJ15574-PA 1..291 1..290 1000 66.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16372-PA 304 GK16372-PA 1..289 1..285 987 67.8 Plus
Dwil\GK12164-PA 295 GK12164-PA 2..252 3..258 362 34.1 Plus
Dwil\GK13072-PA 269 GK13072-PA 25..254 26..254 304 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15860-PA 298 GE15860-PA 1..298 1..289 976 66.1 Plus
Dyak\GE10974-PA 299 GE10974-PA 3..258 6..258 354 34.4 Plus