BDGP Sequence Production Resources |
Search the DGRC for AT13107
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 131 |
Well: | 7 |
Vector: | pOTB7 |
Associated Gene/Transcript | Rcd-1r-RA |
Protein status: | AT13107.pep: gold |
Preliminary Size: | 997 |
Sequenced Size: | 1222 |
Gene | Date | Evidence |
---|---|---|
CG9573 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9573 | 2002-01-11 | Blastp of sequenced clone |
CG9573 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9573 | 2008-04-29 | Release 5.5 accounting |
CG9573 | 2008-08-15 | Release 5.9 accounting |
CG9573 | 2008-12-18 | 5.12 accounting |
1222 bp (1222 high quality bases) assembled on 2002-01-11
GenBank Submission: AY075185
> AT13107.complete GTCCTTTCTCGCTTGAAGCTTATATCGATAACCACAATAGACGCCAACTC GAAACCACGTTTCTCAATCGTCCGTCGAAATTCCGGAGCCAGATCTTTCC AAGCTACTAGATCTTTGCAAGCTAACGCGAAAAAAAACCAGCTTTGCGAT GAGTGCGGAACCAAGTCCGGTAATGAGTCCCCAGCAGCAGGCCGAGCGGG AGAAGGTGTACCAGTTGATCATCGAGCTGGCCTATCCTGCCACGCGGGAG ACCGCTCTGCTGGAGCTGAGCAAGAACACCTATGCGGACCTGGCCCCCAT GCTGTGGAAAAGCGTCGGTACCACCTGCACCCTGCTGCAGGAGATCGTCA ACATATACCCCATAATAACGACGCCCGTTTTGAAGGCCAACCAGTCGAAC CGCGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCTCGCATCCGGA GACTCGCCCGGCCTTCCTGCGGGACCAGATACCGATGTACTTGTACCCCT TCTTGTCGACCACGTTCAAGAGCAGGCCCTTCGAGCAGCTGCGCCTGACC ACGCTGGGCGTGATTAATGCTCTGGCCGAGACCGGTGATACGGAGGTCCT CATCTTCCTGATATGGAGCGAGGTCGTGCCTCACTGTCTGACCAATATGG TCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCAATCCTTGAGAAG ATACTGCTCGATGAGATGGGTCTGACGTACATTTGCGAGAACCACGATCG CTTCTCGCAGGTGGCCATCACCCTGGGCAAAATGGTCATCCATATGTTGA AGTTTCCATGCCTCCGGGTGCTGAAGCATGTGGTGCGCTGCTATCTACTA CTTACGGAAAATGCGCGCGCTCGCAGTGCACTTAGAGTGTGTCTGCCCGA TCTGCTGCGTGACGGCACCTTCACGTCGCTCGTCCAACATGACACGTGCA CCAAGCAGTGGCTGCAGATGCTGCTCAAGAACCTGCAGACAAACGCCGTC AACCCAATGGGCTCCTCCTAGAGAAGCGCCCAACAACTTTCGTCACTCCA CCGTCCATTCAAGCGCCATCGATTAGTGATACCCACTCCTAGTTAACTGC TCGACCGAATAAACATGGCCTACATAATCTACAAATGAAATTATGATATT ACTAAAATTGACGGTACAATAAAAAATATCAAATATAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9011783..9012968 | 1186..1 | 5915 | 99.9 | Minus |
chrX | 22417052 | chrX | 19528235..19528606 | 204..575 | 1020 | 84.9 | Plus |
chrX | 22417052 | chrX | 19528725..19528882 | 619..776 | 340 | 81 | Plus |
chrX | 22417052 | chrX | 19529092..19529210 | 867..985 | 280 | 82.4 | Plus |
chrX | 22417052 | chrX | 19528938..19529025 | 775..862 | 215 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9012881..9014070 | 1190..1 | 5920 | 99.8 | Minus |
X | 23542271 | X | 19639444..19639815 | 204..575 | 1020 | 84.9 | Plus |
X | 23542271 | X | 19639934..19640091 | 619..776 | 340 | 81 | Plus |
X | 23542271 | X | 19640301..19640419 | 867..985 | 280 | 82.4 | Plus |
X | 23542271 | X | 19640147..19640234 | 775..862 | 215 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9012881..9014070 | 1190..1 | 5920 | 99.8 | Minus |
X | 23527363 | X | 19647623..19647913 | 285..575 | 870 | 86.5 | Plus |
X | 23527363 | X | 19648032..19648189 | 619..776 | 340 | 81 | Plus |
X | 23527363 | X | 19647542..19647614 | 204..276 | 215 | 86.3 | Plus |
X | 23527363 | X | 19648245..19648332 | 775..862 | 215 | 82.9 | Plus |
X | 23527363 | X | 19648482..19648517 | 950..985 | 180 | 100 | Plus |
X | 23527363 | X | 19648399..19648453 | 867..921 | 155 | 85.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9011783..9012968 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9573-RA | 1..873 | 149..1021 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9573-RA | 1..873 | 149..1021 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd-1r-RA | 1..873 | 149..1021 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9573-RA | 1..873 | 149..1021 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd-1r-RA | 1..873 | 149..1021 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 566..1751 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9573-RA | 1..1186 | 1..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RB | 571..1756 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 566..1751 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RB | 571..1756 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012885..9014070 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012885..9014070 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012885..9014070 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9012885..9014070 | 1..1186 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012885..9014070 | 1..1186 | 99 | Minus |
Translation from 148 to 1020
> AT13107.hyp MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd-1r-PA | 290 | CG9573-PA | 1..290 | 1..290 | 1490 | 100 | Plus |
Rcd-1-PA | 304 | CG14213-PA | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 1..301 | 1..289 | 954 | 64.5 | Plus |
CG2053-PB | 298 | CG2053-PB | 3..258 | 6..258 | 343 | 34.4 | Plus |
Translation from 148 to 1020
> AT13107.pep MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20275-PA | 304 | GF20275-PA | 1..304 | 1..289 | 986 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19241-PA | 297 | GG19241-PA | 1..297 | 1..289 | 977 | 66.7 | Plus |
Dere\GG11840-PA | 299 | GG11840-PA | 4..282 | 7..285 | 361 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24151-PA | 304 | GH24151-PA | 1..293 | 1..290 | 976 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd-1r-PA | 290 | CG9573-PA | 1..290 | 1..290 | 1490 | 100 | Plus |
Rcd-1-PA | 304 | CG14213-PA | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 1..301 | 1..289 | 954 | 64.5 | Plus |
CG2053-PB | 298 | CG2053-PB | 3..258 | 6..258 | 343 | 34.4 | Plus |
CG2053-PA | 298 | CG2053-PA | 3..258 | 6..258 | 343 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21711-PA | 306 | GI21711-PA | 1..295 | 1..290 | 1000 | 66.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27101-PA | 296 | GL27101-PA | 1..296 | 1..289 | 1011 | 67.2 | Plus |
Dper\GL23452-PA | 331 | GL23452-PA | 12..267 | 15..266 | 367 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12828-PA | 296 | GA12828-PA | 1..296 | 1..289 | 1011 | 67.2 | Plus |
Dpse\GA27260-PA | 302 | GA27260-PA | 12..257 | 15..258 | 371 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12572-PA | 297 | GM12572-PA | 1..283 | 1..283 | 1150 | 75.3 | Plus |
Dsec\GM22976-PA | 299 | GM22976-PA | 1..299 | 1..289 | 990 | 66.6 | Plus |
Dsec\GM16460-PA | 298 | GM16460-PA | 6..258 | 9..258 | 336 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22367-PA | 297 | GD22367-PA | 1..283 | 1..283 | 1141 | 73.1 | Plus |
Dsim\GD21611-PA | 298 | GD21611-PA | 6..258 | 9..258 | 340 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15574-PA | 302 | GJ15574-PA | 1..291 | 1..290 | 1000 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16372-PA | 304 | GK16372-PA | 1..289 | 1..285 | 987 | 67.8 | Plus |
Dwil\GK12164-PA | 295 | GK12164-PA | 2..252 | 3..258 | 362 | 34.1 | Plus |
Dwil\GK13072-PA | 269 | GK13072-PA | 25..254 | 26..254 | 304 | 33 | Plus |