Clone AT13217 Report

Search the DGRC for AT13217

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:132
Well:17
Vector:pOTB7
Associated Gene/TranscriptCG5050-RA
Protein status:AT13217.pep: gold
Sequenced Size:1115

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5050-RA 2011-07-29 Manual selection by Sue Celniker

Clone Sequence Records

AT13217.complete Sequence

1115 bp assembled on 2011-10-17

GenBank Submission: BT132696.1

> AT13217.complete
ATTTGGTATAGCAAACGCAAACGCTATACAAGAAAATTTAAGTTTTTTTT
TTAACACTTTAATACACGGCTGAATTAATGGATAGACAAGGTGTTCATAA
TAGCTATGGGTCAATAGCGAAAGACGCAATAGATGAGCAACGGATGGTGC
TATCGATGCCACAACTGTCCATCCAGAGGAAATCCGTTACAAGCATGAAG
TTATTCACCATGGTGGTGTTGCACTCGTGGCGCCAACGCCGAAAGGAGGT
TCGTGAACTCAAAGAGATGGTGCAACACCTCCAGGATAGCTCCATGAAGA
CCAAAAACGAACTGCACGTATGTGGCACATTGATGCGTGTGGAGGAAAAA
CGAAACAGGGAACTTCAAATAAAGCTTAAGCTATCGACGATGAGCATTGA
CCAAGTAAGGTCCTCCTGTGAATCTCTTGTCAACTCGGTCCGTGACCTCA
CAACAGAGAAAAGGCGATTGGAAACCGATTTGGAACAGCGCTTGCAGGAG
TACAATGAGCTGGAGGAAGTATCTGACAAAACCAAACGGCTGCTCTTCAG
CGCCTACGTGGAACAATCTAGCCTGCAAAAGCAACTAGCTGAGGAGCAGC
GTACGACGCAGAGATTGCAGGCGGAAAAGGACCAGCTAATCCAGGAAGTG
ATACTGGCGGAGGGCAGAGATAACAAGTACCGCCAGGTGCGGGAATGGTA
CCAGCGTGTACTGCACAAAAAGGAGGTGTGCATTTACAACCTGGGAAGGA
GATTGCATATGCTGGAGGAGCAACTGTTTGACATTAATGAGCACACTGGA
GAATTGGAACAATTGCGTGAGAGTGCTCAACAAATGTCGAACGAAATCAC
AGAGTTGCGCCAGGAGATCAACCGAAATCGCAACGGTGTCTTCGGTGATT
CCTGCTGTCGCCTCGGACTCGGACGCCTCCACGACCATGTGATTGCGCCC
TTTCAAGGCAACCATATCTGGATAAAACTTCGACGCTATTCCTTTAACGT
GATATATTTGTTTGCTTTGTATCTGCTGCCTGGAATGTCTCTCAAATATC
GTCAAAACTAAACCTAATTAAATAAACTTTCTATAAAAATAAAAAAAAAA
AAAAAAAAAAAAAAA

AT13217.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17457111..17457410 791..1090 1500 100 Plus
chr2L 23010047 chr2L 17452522..17452814 499..791 1465 100 Plus
chr2L 23010047 chr2L 17451788..17452077 1..290 1405 99 Plus
chr2L 23010047 chr2L 17452155..17452364 291..500 1050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17458476..17458776 791..1091 1505 100 Plus
2L 23513712 2L 17453882..17454174 499..791 1465 100 Plus
2L 23513712 2L 17453148..17453437 1..290 1450 100 Plus
2L 23513712 2L 17453515..17453724 291..500 1050 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17458476..17458776 791..1091 1505 100 Plus
2L 23513712 2L 17453882..17454174 499..791 1465 100 Plus
2L 23513712 2L 17453148..17453437 1..290 1450 100 Plus
2L 23513712 2L 17453515..17453724 291..500 1050 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:18:10 has no hits.

AT13217.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:19:04 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17451788..17452077 1..290 98 -> Plus
chr2L 17452155..17452364 291..500 100 -> Plus
chr2L 17452524..17452813 501..790 100 -> Plus
chr2L 17457111..17457410 791..1090 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-10-17 11:02:31 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 1..984 78..1061 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:41:53 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 1..984 78..1061 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:29:34 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 1..984 78..1061 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-17 11:02:30 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 155..1244 1..1090 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:41:53 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 225..1314 1..1090 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:34 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG5050-RA 225..1314 1..1090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:04 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17453515..17453724 291..500 100 -> Plus
2L 17453884..17454173 501..790 100 -> Plus
2L 17453148..17453437 1..290 100 -> Plus
2L 17458476..17458775 791..1090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:04 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17453515..17453724 291..500 100 -> Plus
2L 17453884..17454173 501..790 100 -> Plus
2L 17453148..17453437 1..290 100 -> Plus
2L 17458476..17458775 791..1090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:04 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17453515..17453724 291..500 100 -> Plus
2L 17453884..17454173 501..790 100 -> Plus
2L 17453148..17453437 1..290 100 -> Plus
2L 17458476..17458775 791..1090 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:41:53 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17453148..17453437 1..290 100 -> Plus
arm_2L 17453515..17453724 291..500 100 -> Plus
arm_2L 17453884..17454173 501..790 100 -> Plus
arm_2L 17458476..17458775 791..1090 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:36:47 Download gff for AT13217.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17453148..17453437 1..290 100 -> Plus
2L 17453515..17453724 291..500 100 -> Plus
2L 17453884..17454173 501..790 100 -> Plus
2L 17458476..17458775 791..1090 100   Plus

AT13217.hyp Sequence

Translation from 77 to 1060

> AT13217.hyp
MDRQGVHNSYGSIAKDAIDEQRMVLSMPQLSIQRKSVTSMKLFTMVVLHS
WRQRRKEVRELKEMVQHLQDSSMKTKNELHVCGTLMRVEEKRNRELQIKL
KLSTMSIDQVRSSCESLVNSVRDLTTEKRRLETDLEQRLQEYNELEEVSD
KTKRLLFSAYVEQSSLQKQLAEEQRTTQRLQAEKDQLIQEVILAEGRDNK
YRQVREWYQRVLHKKEVCIYNLGRRLHMLEEQLFDINEHTGELEQLRESA
QQMSNEITELRQEINRNRNGVFGDSCCRLGLGRLHDHVIAPFQGNHIWIK
LRRYSFNVIYLFALYLLPGMSLKYRQN*

AT13217.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5050-PB 327 CG5050-PB 1..327 1..327 1666 100 Plus
CG5050-PA 327 CG5050-PA 1..327 1..327 1666 100 Plus
CG5043-PA 499 CG5043-PA 198..358 33..193 236 31.1 Plus

AT13217.pep Sequence

Translation from 77 to 1060

> AT13217.pep
MDRQGVHNSYGSIAKDAIDEQRMVLSMPQLSIQRKSVTSMKLFTMVVLHS
WRQRRKEVRELKEMVQHLQDSSMKTKNELHVCGTLMRVEEKRNRELQIKL
KLSTMSIDQVRSSCESLVNSVRDLTTEKRRLETDLEQRLQEYNELEEVSD
KTKRLLFSAYVEQSSLQKQLAEEQRTTQRLQAEKDQLIQEVILAEGRDNK
YRQVREWYQRVLHKKEVCIYNLGRRLHMLEEQLFDINEHTGELEQLRESA
QQMSNEITELRQEINRNRNGVFGDSCCRLGLGRLHDHVIAPFQGNHIWIK
LRRYSFNVIYLFALYLLPGMSLKYRQN*

AT13217.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14797-PA 339 GF14797-PA 24..337 24..324 616 42.2 Plus
Dana\GF14796-PA 518 GF14796-PA 212..465 37..319 195 27.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21089-PA 334 GG21089-PA 5..331 1..324 1102 67 Plus
Dere\GG21087-PA 504 GG21087-PA 202..356 37..191 192 31.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11704-PA 233 GH11704-PA 34..185 35..186 327 48.7 Plus
Dgri\GH11703-PA 504 GH11703-PA 193..334 37..178 184 34.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5050-PB 327 CG5050-PB 1..327 1..327 1666 100 Plus
CG5050-PA 327 CG5050-PA 1..327 1..327 1666 100 Plus
CG5043-PA 499 CG5043-PA 198..358 33..193 236 31.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16071-PA 347 GI16071-PA 25..267 5..245 322 38.1 Plus
Dmoj\GI16060-PA 522 GI16060-PA 218..352 37..171 187 36.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19366-PA 233 GL19366-PA 17..197 16..202 175 28.2 Plus
Dper\GL19365-PA 524 GL19365-PA 216..357 37..178 167 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18621-PA 233 GA18621-PA 17..197 16..202 175 28.2 Plus
Dpse\GA18616-PA 524 GA18616-PA 216..357 37..178 168 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17240-PA 322 GM17240-PA 1..322 1..327 1435 84.1 Plus
Dsec\GM17238-PA 500 GM17238-PA 202..353 37..188 186 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24110-PA 322 GD24110-PA 1..322 1..327 1416 83.5 Plus
Dsim\GD24109-PA 500 GD24109-PA 202..353 37..188 185 32.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16191-PA 269 GJ16191-PA 49..264 13..226 382 46.8 Plus
Dvir\GJ16190-PA 518 GJ16190-PA 214..348 37..171 180 36.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10591-PA 311 GK10591-PA 22..304 35..320 492 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12793-PA 330 GE12793-PA 1..327 1..324 1096 66.1 Plus
Dyak\GE12792-PA 504 GE12792-PA 202..358 37..193 198 33.1 Plus