Clone AT13267 Report

Search the DGRC for AT13267

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:132
Well:67
Vector:pOTB7
Associated Gene/Transcripthid-RA
Protein status:AT13267.pep: gold
Preliminary Size:3988
Sequenced Size:1893

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5123 2002-01-01 Sim4 clustering to Release 2
CG5123 2002-01-11 Blastp of sequenced clone
CG5123 2003-01-01 Sim4 clustering to Release 3
W 2008-04-29 Release 5.5 accounting
W 2008-08-15 Release 5.9 accounting
W 2008-12-18 5.12 accounting

Clone Sequence Records

AT13267.complete Sequence

1893 bp (1893 high quality bases) assembled on 2002-01-11

GenBank Submission: AY075188

> AT13267.complete
AAAGTTTCTAATATTCAAAATCTTGCACAAGAAATACAAAATCAATTAAA
GTGAACTCTAACCAAAAGTTGTACACAAAATAAAAAGCAAAACAAAGCAG
CGAAGAACAATCACAAGAAGAGCAAAGTGCCAACAAAGTGCAGGAAGGAA
GGAAGCGGATAAGGACAAAAAGGAAGCCAGCACACACACACACACACCCA
CACAATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCGCCGATGACGTAG
CGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCCCACAACCACCCA
CTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGGCGTGTCCTCGGC
CTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGTCGGACGGCGCCA
GCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCGTCGGCCACGCAG
ACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCTATACGCCCTCTA
CGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCCCGCAAATCTTCC
AGTATCCGCCGCCAAGCCCCTCTTGCAATTTCACGGGCGGCGATGTGTTC
TTTCCGCACGGCCATCCGAATCCGAACTCGAATCCCCATCCGCGCACCCC
CCGAACCAGCGTGAGCTTCTCCTCCGGCGAGGAGTACAACTTCTTCCGGC
AGCAGCAGCCGCAACCACATCCGTCATATCCGGCGCCATCAACACCGCAG
CCAATGCCACCGCAGTCAGCGCCGCCGATGCACTGCAGCCACAGCTACCC
GCAGCAGTCGGCGCACATGATGCCACACCATTCCGCTCCCTTCGGAATGG
GCGGTACCTACTACGCGGGCTACACGCCGCCACCCACTCCGAACACGGCC
AGTGCGGGCACCTCCAGCTCATCGGCGGCCTTCGGCTGGCACGGCCACCC
CCACAGCCCCTTCACGTCGACCTCCACGCCGTTATCGGCGCCAGTGGCGC
CCAAGATGCGCCTGCAGCGCAGCCAGTCGGATGCGGCCAGACGCAAGCGA
TTGACCTCGACGGGCGAGGATGAGCGCGAGTACCAGAGCGATCATGAGGC
CACTTGGGACGAGTTTGGCGATCGCTACGACAACTTTACGGCCGGCCGGG
AGCGTCTGCAGGAGTTCAATGGACGCATCCCGCCCCGGAAGAAGAAGAGC
TCCAATAGCCACTCGAGCAGCAGCAATAATCCAGTCTGCCATACCGATAG
CCAGCCCGGTGGTACATCCCAAGCGGAGAGCGGTGCCATCCATGGCCACA
TCAGTCAGCAGCGACAGGTGGAGCGAGAACGACAAAAGGCGAAGGCCGAG
AAGAAGAAACCACAGAGCTTCACTTGGCCAACTGTTGTGACCGTTTTCGT
TTTGGCCATGGGCTGTGGCTTCTTTGCGGCGCGATGAAAGCGCAGGAGAC
GTGTAATCGAATGATCTATAGTGAAATCAGCTAGCCCTTAAGATATATGC
CGATCTAAACATAGTTGTAGTTAAACCGTACATAAGTGCAACGAATTTAT
TGAACTGCAGGAGCGAAAGCAGAAAGTCATTAATTCGTAAACGGATTGTT
AGATACACAAACAGCCAACATACACGAAGAGTGTGCCTAAGATTAAGAAG
GTTGACGGGACACAAGAACAATATATTCTATCTGTCTATGGTAACTGCAT
TTGTATTTCTAAAACGAAACGAAAGATAACAATCTTAACTGCTCAAAGTA
ATGAAAACTCTTAGACTGGCAAGAGACTCAAATCACACTTATTTTTTTGC
TGATCCATATTTTTGTACAACCTTTTGAGCGATATTTACAAATTATACTA
GTACAAAAAAAAGAGAGAGAGAGATAAAAAAAAAAAAAAAAAA

AT13267.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Wrinkled-RA 4040 Wrinkled-RA 316..2199 1..1888 9310 99.6 Plus
Wrinkled.a 4008 Wrinkled.a 316..1668 1..1357 6700 99.7 Plus
Wrinkled.a 4008 Wrinkled.a 1666..2190 1364..1888 2580 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18174418..18174952 535..1 2675 100 Minus
chr3L 24539361 chr3L 18159198..18159718 1875..1355 2605 100 Minus
chr3L 24539361 chr3L 18162665..18163173 1043..535 2485 99.2 Minus
chr3L 24539361 chr3L 18161682..18161995 1356..1043 1540 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18169560..18170093 1888..1355 2625 99.4 Minus
3L 28110227 3L 18184792..18185322 535..1 2580 99.3 Minus
3L 28110227 3L 18173047..18173555 1043..535 2545 100 Minus
3L 28110227 3L 18172060..18172373 1356..1043 1570 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18162660..18163193 1888..1355 2625 99.4 Minus
3L 28103327 3L 18177892..18178422 535..1 2590 99.2 Minus
3L 28103327 3L 18166147..18166655 1043..535 2545 100 Minus
3L 28103327 3L 18165160..18165473 1356..1043 1570 100 Minus
Blast to na_te.dros performed 2019-03-16 04:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6146..6246 29..128 133 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2508 685..751 124 70.6 Plus

AT13267.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:17 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18161682..18161994 1044..1356 99 <- Minus
chr3L 18159198..18159716 1357..1875 100 <- Minus
chr3L 18162665..18163172 536..1043 99 <- Minus
chr3L 18174418..18174571 382..535 100 == Minus
chr3L 18174638..18174952 1..315 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:41:08 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 1..1233 205..1437 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:49:41 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 1..1233 205..1437 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:36 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 1..1233 205..1437 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:16:38 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 1..1233 205..1437 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:54:23 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
hid-RA 1..1233 205..1437 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:41:04 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 316..2186 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:49:40 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 316..2186 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:36 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 320..2190 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:16:38 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
W-RA 316..2186 1..1875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:54:23 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
hid-RA 320..2190 1..1875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:17 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18169573..18170091 1357..1875 100 <- Minus
3L 18172060..18172372 1044..1356 100 <- Minus
3L 18173047..18173554 536..1043 100 <- Minus
3L 18184792..18185322 1..535 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:17 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18169573..18170091 1357..1875 100 <- Minus
3L 18172060..18172372 1044..1356 100 <- Minus
3L 18173047..18173554 536..1043 100 <- Minus
3L 18184792..18185322 1..535 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:17 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18169573..18170091 1357..1875 100 <- Minus
3L 18172060..18172372 1044..1356 100 <- Minus
3L 18173047..18173554 536..1043 100 <- Minus
3L 18184792..18185322 1..535 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:36 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18165160..18165472 1044..1356 100 <- Minus
arm_3L 18162673..18163191 1357..1875 100 <- Minus
arm_3L 18166147..18166654 536..1043 100 <- Minus
arm_3L 18177892..18178422 1..535 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:50:38 Download gff for AT13267.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18162673..18163191 1357..1875 100 <- Minus
3L 18165160..18165472 1044..1356 100 <- Minus
3L 18166147..18166654 536..1043 100 <- Minus
3L 18177892..18178422 1..535 99   Minus

AT13267.pep Sequence

Translation from 204 to 1436

> AT13267.pep
MAVPFYLPEGGADDVASSSSGASGNSSPHNHPLPSSASSSVSSSGVSSAS
ASSASSSSSASSDGASSAASQSPNTTTSSATQTPMQSPLPTDQVLYALYE
WVRMYQSQQSAPQIFQYPPPSPSCNFTGGDVFFPHGHPNPNSNPHPRTPR
TSVSFSSGEEYNFFRQQQPQPHPSYPAPSTPQPMPPQSAPPMHCSHSYPQ
QSAHMMPHHSAPFGMGGTYYAGYTPPPTPNTASAGTSSSSAAFGWHGHPH
SPFTSTSTPLSAPVAPKMRLQRSQSDAARRKRLTSTGEDEREYQSDHEAT
WDEFGDRYDNFTAGRERLQEFNGRIPPRKKKSSNSHSSSSNNPVCHTDSQ
PGGTSQAESGAIHGHISQQRQVERERQKAKAEKKKPQSFTWPTVVTVFVL
AMGCGFFAAR*

AT13267.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10826-PA 435 GF10826-PA 1..435 1..410 1179 70.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15751-PA 419 GG15751-PA 1..419 1..410 1666 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17120-PA 419 GH17120-PA 1..419 1..410 833 57.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
hid-PB 410 CG5123-PB 1..410 1..410 2201 100 Plus
hid-PA 410 CG5123-PA 1..410 1..410 2201 100 Plus
Muc91C-PB 949 CG7709-PB 586..909 16..357 161 26.3 Plus
Muc91C-PA 950 CG7709-PA 587..910 16..357 161 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11723-PA 394 GI11723-PA 1..394 1..410 683 50.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22717-PA 403 GL22717-PA 1..403 1..410 874 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18676-PA 405 GA18676-PA 1..405 1..410 873 61.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14948-PA 410 GM14948-PA 1..410 1..410 2096 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12350-PA 410 GD12350-PA 1..410 1..410 2099 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11396-PA 396 GJ11396-PA 1..396 1..410 807 59.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11627-PA 445 GK11627-PA 1..336 1..338 653 56.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22086-PA 417 GE22086-PA 1..417 1..410 2029 96.2 Plus

AT13267.hyp Sequence

Translation from 204 to 1436

> AT13267.hyp
MAVPFYLPEGGADDVASSSSGASGNSSPHNHPLPSSASSSVSSSGVSSAS
ASSASSSSSASSDGASSAASQSPNTTTSSATQTPMQSPLPTDQVLYALYE
WVRMYQSQQSAPQIFQYPPPSPSCNFTGGDVFFPHGHPNPNSNPHPRTPR
TSVSFSSGEEYNFFRQQQPQPHPSYPAPSTPQPMPPQSAPPMHCSHSYPQ
QSAHMMPHHSAPFGMGGTYYAGYTPPPTPNTASAGTSSSSAAFGWHGHPH
SPFTSTSTPLSAPVAPKMRLQRSQSDAARRKRLTSTGEDEREYQSDHEAT
WDEFGDRYDNFTAGRERLQEFNGRIPPRKKKSSNSHSSSSNNPVCHTDSQ
PGGTSQAESGAIHGHISQQRQVERERQKAKAEKKKPQSFTWPTVVTVFVL
AMGCGFFAAR*

AT13267.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
hid-PB 410 CG5123-PB 1..410 1..410 2201 100 Plus
hid-PA 410 CG5123-PA 1..410 1..410 2201 100 Plus
Muc91C-PB 949 CG7709-PB 586..909 16..357 161 26.3 Plus
Muc91C-PA 950 CG7709-PA 587..910 16..357 161 26.3 Plus