Clone AT13284 Report

Search the DGRC for AT13284

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:132
Well:84
Vector:pOTB7
Associated Gene/TranscriptCG13088-RA
Protein status:AT13284.pep: gold
Sequenced Size:2915

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15613 2002-01-01 Sim4 clustering to Release 2
CG13088 2002-02-26 Blastp of sequenced clone
CG13088 2003-01-01 Sim4 clustering to Release 3
CG13088 2008-04-29 Release 5.5 accounting
GstS1 2008-08-15 Release 5.9 accounting
CG13088 2008-08-15 Release 5.9 accounting
GstS1 2008-12-18 5.12 accounting
CG13088 2008-12-18 5.12 accounting

Clone Sequence Records

AT13284.complete Sequence

2915 bp (2915 high quality bases) assembled on 2002-02-26

GenBank Submission: BT003644

> AT13284.complete
TTTTTTTAAGATGAACCACTCGTAGCTTTTGTATTTTATGCATATATATA
TATATATAGGTACAGCAAATGTCTGCATAGGTGCGCTAAATGTATGTTCT
AAAAGTAAGCCAAAATATTATAAACTGTGCAATAAGTATTATCTTTCATC
ATTTCAGAAGAAGCTAACGAACGGCGATCCGCTGCCGGACCCCAATAGAA
ATATGTATATAGCGCCATGCAAAGAGAATTATAACCAAGAAATTAAGAAC
AAATACGATTTATCCATAGTGATACGTGCTAAACTCCTACGCGTTTATGA
CCCCGTGCGAAAATCCGCCGTCCTCTCGGATCCTCCGCAAAAAGGAACAA
AATGTGTGCAGATGTGGGTGGTGTGCATTTCTGCGGTGCGGTTGTGTCTG
AGTGGTTGTGCAATGCTTTCCCATCCTCCCAAGTCCTGTTCGGTGAACTT
AGACCTCGGTGACGGGGCGCTTCTCGATCCAGGCCTTGATCGGTTCCAAA
GCGTTGACGGCATCCACGACTCCGCGCAGAGCTGGGTAGGGTTCCAACAG
ATCGCGCTTGACCATGTAGTTCATGTAGTCGGTGATGCCTGCGAAGTAGA
CGTCGGCCCAGGTCAGCTTGCCCAGAGCCAGGTGACCATCGTTGTCCTTG
ACGGTCTGCTCGAGCTTCTCCAGGTAGAATGGAATGACCTCCGCATTCAG
GGTGACCAACTTCTTCTCTTTAATCTCGTCCTCCGGCTCGTACGAGACGA
CTGCAATTTTTAGACGGAAGTCATTGATGGTGTCAACGACAATGTCGATC
TGCAGATCCTCCCACGGAGTAGCGCCGCACAGGCCGACAGTCTTGGCCAG
GAATCGAGCCATCGAAATGCTCTGGTGCACACGCTTGCCGTCCACCTCCA
GCACGGGCATCTGTCCCATGGGCATGGTGGGCTTCAGGGCTGGCCACTCG
TCGCGGGTGACGCGCACATCCTCGTACTCCTGGTTGCCGTAGGCGAACAG
GTAGCGCAGGGGCTCGGCCAACGCCTTCACGTTGAAGTAGAAGAGCGTGT
AGCTGTGCTTGATGGGCTCGGCGGGCTCTGCTGGTGGAGCGGCCTCTCCG
CCCTCGACGGCACCCTCGGCTCCCTCGGCGGGTGGTGGCGCCTCTCCCTC
GGCTGGTGGTGCTCCCTCAGCTGGTGGTGCTTGTGCTTCATCGGCCATCT
CTGCGCTTTCTCAATGCAATTCCCTCAACAAAGAATACGAAATCAGCTGG
GCACTTGGGCTCTCGGGTCTTCAATTCGCTAATAAGCGTTCACTTAAATC
GTGGGCGAAGGAATAGCGTTCGGTTCGATTCGCACTCTCTTTCCGTTACT
CTCTACTCTCACTCTCTCCAGCCACTGGGAAGCTATCACTGAACCGATCA
AGCATGCAAACAAACAGCTGACAGTATTTGTTTTTGGTAATCTCGTTTTG
AACAAAAATTTCGATGTGAGATGGAGCAAATAAATGAAGATGTTTGGATA
GATATACTAAAGTACCTACCAATGAGGGATCAGTTGTCGCTGGTCGAAGT
CAACGAGAATATATCGGCATACGTGAAGTATCATTGGAGTCATCTCAAAA
CAGTGACTCTGACCCGCGAGGATCTGGATTTTCTGGATCGGAATAACAAG
CTGATGCACGAATGTCTGGGTGGCTGGTCGGCAACGGTGGAGCGTTTGAA
TTTGCAAAGTGCCAGCAGTGATCTGCTGAGAAAGTGGACGGAATACGACT
TTCCCCACCTCCGATCGCTCGACTGCCACATGGACTACAATCTCGAGGAG
GCGGACGAGGAAACCCTTCTGCTAACCGAGCTGTTCCCGCTCTTGACACG
GCTGTCACTCAATAGCAGCACAACAGGTCGTTACTTGTGGCACTGGAAGC
AACTAAGGGAGTTGAATCTCACCTGGTGTGAGTACCTGGACCCAGACCAC
TTCGAGGAGATCTTTGGCAACCTACAGCTGACCAAGCTGACTATGCTCTA
TTACGGATATAACGTGAACCTAGGCGAAAAAGTTGTGGACATAACGCGAT
GTACCACGCTTGAAGAGCTGCACATCGATGACCACCATTTGCTGGGTGAT
TTCCTGCCCCGACTGATGAATCTGCCGCACTTCCGCCGCTTGGCCTTTTA
CACGCGAGACTACTATGAGTATTTGCTAGGTTCGGTGGCCAGGCACAAGC
CGCTGAAGGTTCAATCGCTTCTCTTCAACGACTCTTTCTGGAGCAGTGAA
CGGGTGGCGGGAAGTATACTGCACATGACCAATCTTCGTCGGCTGGTCCT
GCAGGAGGATGACATCGATGCGCAGCAGCTGCACACCATCTGCCACAAAT
TGCCAAACTTGGAGGAGCTACACCTTTTGGCGATGCGAGAAGTTCCGTCT
CCCAGCCACCTGTGGAACTCTATAGGTCACTGCCATCTTCTTAGGATTCT
TAACCTATCGTCTACCAAGCTGGTGGACCTCCGAAGCTCCTGCCTGACAA
AAGTTCTGCTAAGTCGCAGGATTCCACTGACCCTGCATCTCCACAACACT
GGATTGGATCCTAGTAAAGTTCTACGGGATTTTGATAGTGCCTCCTTGAA
AATCTCCTTTGAGCCGATCCATTTGAATATTTGGAGTCCGCGATTTGTGG
AAATCGAATTCAGTCCAGACTCGTAGTAGTCATTTGAAAAGCCTTAAATG
ACATTTCTACCTCAATCCGTCCGGTATACGAATATATATGTAGATGGAGA
TCCAAATGATATATCCTGAGTAAAATGTTGTACCCTTTGCAAGGGTATAG
AGTCAAATAGCTTAACAAAACCACAAAATCTTTTATCTGTCTACCTACCA
AAATCGTATTAAATTCAAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

AT13284.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-RA 1843 CG13088-RA 61..1538 1399..2876 7375 99.9 Plus
GstS1-RB 1919 GstS1-RB 155..1547 1399..7 6950 99.9 Minus
GstS1.b 2111 GstS1.b 347..1739 1399..7 6950 99.9 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8488183..8489104 1649..2570 4610 100 Plus
chr2R 21145070 chr2R 12980826..12981437 7..618 3060 100 Plus
chr2L 23010047 chr2L 8489158..8489463 2569..2874 1515 99.7 Plus
chr2R 21145070 chr2R 12981972..12982269 928..1225 1490 100 Plus
chr2L 23010047 chr2L 8487876..8488125 1399..1648 1250 100 Plus
chr2R 21145070 chr2R 12984434..12984610 1223..1399 885 100 Plus
chr2R 21145070 chr2R 12981736..12981903 760..927 840 100 Plus
chr2R 21145070 chr2R 12981523..12981665 617..759 715 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8489266..8490187 1649..2570 4610 100 Plus
2R 25286936 2R 17093619..17094230 7..618 3060 100 Plus
2L 23513712 2L 8490241..8490548 2569..2876 1525 99.7 Plus
2R 25286936 2R 17094765..17095062 928..1225 1490 100 Plus
2L 23513712 2L 8488959..8489208 1399..1648 1250 100 Plus
2R 25286936 2R 17097227..17097403 1223..1399 870 99.4 Plus
2R 25286936 2R 17094529..17094696 760..927 840 100 Plus
2R 25286936 2R 17094316..17094458 617..759 715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8489266..8490187 1649..2570 4610 100 Plus
2R 25260384 2R 17094818..17095429 7..618 3060 100 Plus
2L 23513712 2L 8490241..8490548 2569..2876 1525 99.6 Plus
2R 25260384 2R 17095964..17096261 928..1225 1490 100 Plus
2L 23513712 2L 8488959..8489208 1399..1648 1250 100 Plus
2R 25260384 2R 17098426..17098602 1223..1399 870 99.4 Plus
2R 25260384 2R 17095728..17095895 760..927 840 100 Plus
2R 25260384 2R 17095515..17095657 617..759 715 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:50:53 has no hits.

AT13284.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:51:56 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8487866..8488125 1389..1648 98 -> Plus
chr2L 8488183..8489102 1649..2568 100 -> Plus
chr2L 8489158..8489463 2569..2874 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:35 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1206 1471..2676 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:27 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1206 1471..2676 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:13:48 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1206 1471..2676 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:33 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1206 1471..2676 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:39 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1206 1471..2676 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:11 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1476 1399..2874 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:27 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1476 1399..2874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:48 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1454 1421..2874 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:33 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1450 1425..2874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:39 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 1..1454 1421..2874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:56 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8488949..8489208 1389..1648 98 -> Plus
2L 8489266..8490185 1649..2568 100 -> Plus
2L 8490241..8490546 2569..2874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:56 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8488949..8489208 1389..1648 98 -> Plus
2L 8489266..8490185 1649..2568 100 -> Plus
2L 8490241..8490546 2569..2874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:56 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8488949..8489208 1389..1648 98 -> Plus
2L 8489266..8490185 1649..2568 100 -> Plus
2L 8490241..8490546 2569..2874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:48 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8488949..8489208 1389..1648 98 -> Plus
arm_2L 8489266..8490185 1649..2568 100 -> Plus
arm_2L 8490241..8490546 2569..2874 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:25 Download gff for AT13284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8488949..8489208 1389..1648 98 -> Plus
2L 8489266..8490185 1649..2568 100 -> Plus
2L 8490241..8490546 2569..2874 99   Plus

AT13284.pep Sequence

Translation from 1470 to 2675

> AT13284.pep
MEQINEDVWIDILKYLPMRDQLSLVEVNENISAYVKYHWSHLKTVTLTRE
DLDFLDRNNKLMHECLGGWSATVERLNLQSASSDLLRKWTEYDFPHLRSL
DCHMDYNLEEADEETLLLTELFPLLTRLSLNSSTTGRYLWHWKQLRELNL
TWCEYLDPDHFEEIFGNLQLTKLTMLYYGYNVNLGEKVVDITRCTTLEEL
HIDDHHLLGDFLPRLMNLPHFRRLAFYTRDYYEYLLGSVARHKPLKVQSL
LFNDSFWSSERVAGSILHMTNLRRLVLQEDDIDAQQLHTICHKLPNLEEL
HLLAMREVPSPSHLWNSIGHCHLLRILNLSSTKLVDLRSSCLTKVLLSRR
IPLTLHLHNTGLDPSKVLRDFDSASLKISFEPIHLNIWSPRFVEIEFSPD
S*

AT13284.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15531-PA 405 GF15531-PA 1..404 1..400 1153 59.4 Plus
Dana\GF15444-PA 410 GF15444-PA 7..385 4..381 315 27.1 Plus
Dana\GF23401-PA 445 GF23401-PA 18..371 3..333 265 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25289-PA 405 GG25289-PA 1..405 1..401 1766 87.9 Plus
Dere\GG23604-PA 408 GG23604-PA 4..365 1..360 297 29.5 Plus
Dere\GG10298-PA 442 GG10298-PA 17..368 3..333 275 27.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16801-PA 414 GH16801-PA 3..411 2..399 870 43.8 Plus
Dgri\GH11441-PA 374 GH11441-PA 2..371 1..399 320 27.4 Plus
Dgri\GH11440-PA 363 GH11440-PA 2..348 1..370 273 27.2 Plus
Dgri\GH13074-PA 447 GH13074-PA 21..410 3..367 268 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-PA 401 CG13088-PA 1..401 1..401 2137 100 Plus
CG31633-PA 408 CG31633-PA 4..384 1..380 365 29 Plus
CG14937-PA 445 CG14937-PA 16..370 3..332 244 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13815-PA 412 GI13815-PA 2..408 1..398 954 47.7 Plus
Dmoj\GI16596-PA 383 GI16596-PA 1..378 1..399 355 27.1 Plus
Dmoj\GI17693-PA 435 GI17693-PA 18..376 3..349 255 26.8 Plus
Dmoj\GI16906-PA 374 GI16906-PA 2..349 1..370 158 24.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18891-PA 446 GL18891-PA 23..372 3..333 280 27.8 Plus
Dper\GL26206-PA 402 GL26206-PA 5..399 3..399 221 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13364-PA 446 GA13364-PA 23..372 3..333 279 27.8 Plus
Dpse\GA16349-PA 402 GA16349-PA 5..399 3..399 225 25.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17000-PA 405 GM17000-PA 1..405 1..401 1866 88.6 Plus
Dsec\GM14045-PA 408 GM14045-PA 4..366 1..361 316 30.3 Plus
Dsec\GM10979-PA 442 GM10979-PA 16..367 3..332 244 24.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23549-PA 327 GD23549-PA 1..326 1..326 1544 89 Plus
Dsim\GD22559-PA 408 GD22559-PA 4..368 1..363 317 30.1 Plus
Dsim\GD22158-PA 443 GD22158-PA 16..368 3..332 242 24.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11680-PA 412 GJ11680-PA 2..409 1..399 1087 53.4 Plus
Dvir\GJ17173-PA 386 GJ17173-PA 2..380 1..399 381 28.3 Plus
Dvir\GJ17480-PA 439 GJ17480-PA 16..403 3..367 243 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15456-PA 412 GK15456-PA 7..408 4..399 985 48.5 Plus
Dwil\GK18278-PA 399 GK18278-PA 2..396 12..399 287 26.4 Plus
Dwil\GK14974-PA 444 GK14974-PA 10..383 3..353 272 26.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19329-PA 405 GE19329-PA 1..404 1..400 1798 87.6 Plus
Dyak\GE18423-PA 408 GE18423-PA 4..365 1..360 308 28.8 Plus
Dyak\GE12698-PA 441 GE12698-PA 16..367 3..333 271 26.8 Plus

AT13284.hyp Sequence

Translation from 1470 to 2675

> AT13284.hyp
MEQINEDVWIDILKYLPMRDQLSLVEVNENISAYVKYHWSHLKTVTLTRE
DLDFLDRNNKLMHECLGGWSATVERLNLQSASSDLLRKWTEYDFPHLRSL
DCHMDYNLEEADEETLLLTELFPLLTRLSLNSSTTGRYLWHWKQLRELNL
TWCEYLDPDHFEEIFGNLQLTKLTMLYYGYNVNLGEKVVDITRCTTLEEL
HIDDHHLLGDFLPRLMNLPHFRRLAFYTRDYYEYLLGSVARHKPLKVQSL
LFNDSFWSSERVAGSILHMTNLRRLVLQEDDIDAQQLHTICHKLPNLEEL
HLLAMREVPSPSHLWNSIGHCHLLRILNLSSTKLVDLRSSCLTKVLLSRR
IPLTLHLHNTGLDPSKVLRDFDSASLKISFEPIHLNIWSPRFVEIEFSPD
S*

AT13284.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-PA 401 CG13088-PA 1..401 1..401 2137 100 Plus
CG31633-PA 408 CG31633-PA 4..384 1..380 365 29 Plus
CG14937-PA 445 CG14937-PA 16..370 3..332 244 23.8 Plus