Clone AT13296 Report

Search the DGRC for AT13296

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:132
Well:96
Vector:pOTB7
Associated Gene/TranscriptCG8136-RC
Protein status:AT13296.pep: gold
Sequenced Size:1548

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9790 2002-01-01 Sim4 clustering to Release 2
CG8136 2002-05-29 Blastp of sequenced clone
CG8136 2008-04-29 Release 5.5 accounting
CG8136 2008-08-15 Release 5.9 accounting
CG8136 2008-12-18 5.12 accounting

Clone Sequence Records

AT13296.complete Sequence

1548 bp (1548 high quality bases) assembled on 2002-05-29

GenBank Submission: AY118279

> AT13296.complete
AAATTTGTAAGCTCTGTAAATTCAAAACCAGAACTGCTGCAGGCCAGTGG
CGAAGTTAATTTGTCAGAGGAAAACTCAAGCCATCTCCATGGATAAAAAC
CACAAAAGAGGGGTTTGGACGTTCAATGTCTAGTAGCAGTCGCCGCGTCA
TGTGGAAGCTCAACGAGGAGGAGGAGACATTCGACTCCTTGGTCAATTAT
CGGCGGCTTCCTTCGCGCAGCCTAAACCGAAGTCAGGTGACCGATGTGCC
CACCAAGGGACACACTACCTCCGAAAATTGCCAGCTGCCAGCGCAAGAGT
TGGAAACAAAGAGCGCCACCAACGAACAAGGTGCATTGGGCATAATGTCG
GTTAGCCTACCGCAAACAACCAGGAATTCCCATCAATCGTCGGCCACGTC
ACTGCCGGAGGCCAAGGGATGCACTGCCACCGAAAACTGCCAGTTGCTAG
CGCAAGAGGCGGAAACAAAGAACGCCAGCAACGAACAAGGTGGATTGGGC
AAAATGTCGGTTAGCCTGCCGCAACAAAACTGGAACGCCAATCAATCGTC
GGCCACGTCACTGCCGGAGGCCAAGGAGATCAGCTCCAAAGAGCAGGCGA
TCATCTACTGGCGGCGTCTTTTCGATGGTATCCACAAGCGCCAGCGTGGC
GAAAGAAAAGTTGCAGCAATGCAGCCCGAAAATACCACAGATGTCGTGCT
GACGTCCAAGCCAAACCTGGCATTGCGCTACAAGCCCTCCCATGAGTCGC
TTAAAAACAAGCGGATCAAGGACCTGGCTCCTGAACGATGCCCGAGCACG
TCCCGGGGATCAACGTCCTGCAAACTGGTATCGGACCTCAAGATGGAGAC
GTTCAGCCTGCCGCCGCAGCAGACGTGTGTGGTGCGCGAGGTGGAGCCTC
GGTTTGGCCAGCGCCGACGCATGTTGTTGGCCAACGACACGGATTCGTGC
TACTCCGGCGAGCTGGAGGTCCCCAAAAACAGTCCCGTCCAGGAGCCAGG
ACCCTATCCGCGCAGCGAACTGATCAGTGTCCATGTCTCGGCGCCCACCA
GCTCCTCTTTTACGGGAGCAACACGGCGGAGTCTGTCTCCAACTAGGCAG
CGCACTGCGACGAGCAAGGTGGCCGCCGGGACGAAGGGCGGACCATCACC
AGCAGTTGGGGGCAACAAGTGCTCGAGCGTCAGCAGCGGGAGTGCAGGTA
CCAGCCAGCTGCCTAATTTCCGCCAGCGGCAGCAAGAGCTCCATCGCTAT
CGCGTTATGATCGAGCAACGGCGCCTCGATCTACTCGAGCTCAAGATAGC
CCGCGAACGCGAGGAGGCGCTGCACAGCGAGGTTCTGTTTCACAAGGAAC
TGCAGATCAAGGAGAACATGATCAAGGTGTACGAGGACAACGACTGCTCC
AACGCCTAGGACTTCCTTTATTCCTAACTCTTTCGACCCCAAATTCAGAA
AGGTATTTTACACTTGGCAATGGCCCTGGCCTCAGTAGTTCAAAACACTC
AGTCAAATAAAACCGAAATTCATTTAGACATCCCAAAAAAAAAAAAAA

AT13296.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8136-RC 1615 CG8136-RC 82..1615 1..1534 7670 100 Plus
CG8136-RB 1684 CG8136-RB 99..1639 1..1536 7605 99.6 Plus
CG8136-RA 1717 CG8136-RA 99..1636 1..1536 7605 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4547596..4549024 106..1534 7130 99.9 Plus
chr3R 27901430 chr3R 4547425..4547529 1..105 525 100 Plus
chr3R 27901430 chr3R 4547743..4547907 412..576 510 87.3 Plus
chr3R 27901430 chr3R 4547902..4548066 253..417 510 87.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:47:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8721623..8723053 106..1536 7155 100 Plus
3R 32079331 3R 8721452..8721556 1..105 525 100 Plus
3R 32079331 3R 8721770..8721934 412..576 510 87.3 Plus
3R 32079331 3R 8721929..8722093 253..417 510 87.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8462454..8463884 106..1536 7155 100 Plus
3R 31820162 3R 8462283..8462387 1..105 525 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:02:50 has no hits.

AT13296.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:03:48 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4547425..4547529 1..105 100 -> Plus
chr3R 4547596..4549024 106..1534 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:03:36 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RB 1..1326 89..1409 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:37:13 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RB 1..1326 89..1409 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:40:12 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RA 1..1323 89..1409 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:28:49 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RB 1..1326 89..1409 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:30 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RA 1..1323 89..1409 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:09:37 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RC 82..1615 1..1534 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:37:13 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RC 82..1615 1..1534 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:40:12 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RC 82..1615 1..1534 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:28:49 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RC 82..1615 1..1534 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:30 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
CG8136-RC 82..1615 1..1534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:48 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8721452..8721556 1..105 100 -> Plus
3R 8721623..8723051 106..1534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:48 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8721452..8721556 1..105 100 -> Plus
3R 8721623..8723051 106..1534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:03:48 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8721452..8721556 1..105 100 -> Plus
3R 8721623..8723051 106..1534 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:40:12 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4547174..4547278 1..105 100 -> Plus
arm_3R 4547345..4548773 106..1534 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:01:24 Download gff for AT13296.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8462454..8463882 106..1534 100   Plus
3R 8462283..8462387 1..105 100 -> Plus

AT13296.pep Sequence

Translation from 125 to 1408

> AT13296.pep
MSSSSRRVMWKLNEEEETFDSLVNYRRLPSRSLNRSQVTDVPTKGHTTSE
NCQLPAQELETKSATNEQGALGIMSVSLPQTTRNSHQSSATSLPEAKGCT
ATENCQLLAQEAETKNASNEQGGLGKMSVSLPQQNWNANQSSATSLPEAK
EISSKEQAIIYWRRLFDGIHKRQRGERKVAAMQPENTTDVVLTSKPNLAL
RYKPSHESLKNKRIKDLAPERCPSTSRGSTSCKLVSDLKMETFSLPPQQT
CVVREVEPRFGQRRRMLLANDTDSCYSGELEVPKNSPVQEPGPYPRSELI
SVHVSAPTSSSFTGATRRSLSPTRQRTATSKVAAGTKGGPSPAVGGNKCS
SVSSGSAGTSQLPNFRQRQQELHRYRVMIEQRRLDLLELKIAREREEALH
SEVLFHKELQIKENMIKVYEDNDCSNA*

AT13296.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18184-PA 410 GF18184-PA 20..410 6..427 1067 54.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12483-PA 380 GG12483-PA 22..380 8..427 1424 69.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18575-PA 316 GH18575-PA 127..313 197..421 374 40.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8136-PD 427 CG8136-PD 1..427 1..427 2185 100 Plus
CG8136-PC 427 CG8136-PC 1..427 1..427 2185 100 Plus
CG8136-PB 441 CG8136-PB 15..441 1..427 2185 100 Plus
CG8136-PA 440 CG8136-PA 14..440 1..427 2185 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22392-PA 357 GI22392-PA 24..357 9..427 480 35.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12474-PA 438 GL12474-PA 104..438 143..427 505 37.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27520-PA 438 GA27520-PA 104..438 143..427 502 37 Plus
Dpse\GA27520-PB 416 GA27520-PB 82..416 143..427 501 37 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23756-PA 441 GM23756-PA 22..441 8..427 2050 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18567-PA 417 GD18567-PA 22..417 8..427 1901 86.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22677-PA 368 GJ22677-PA 119..368 155..427 482 44.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11277-PA 382 GK11277-PA 15..382 1..427 742 42.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25900-PA 386 GE25900-PA 22..386 8..427 1463 70.1 Plus

AT13296.hyp Sequence

Translation from 125 to 1408

> AT13296.hyp
MSSSSRRVMWKLNEEEETFDSLVNYRRLPSRSLNRSQVTDVPTKGHTTSE
NCQLPAQELETKSATNEQGALGIMSVSLPQTTRNSHQSSATSLPEAKGCT
ATENCQLLAQEAETKNASNEQGGLGKMSVSLPQQNWNANQSSATSLPEAK
EISSKEQAIIYWRRLFDGIHKRQRGERKVAAMQPENTTDVVLTSKPNLAL
RYKPSHESLKNKRIKDLAPERCPSTSRGSTSCKLVSDLKMETFSLPPQQT
CVVREVEPRFGQRRRMLLANDTDSCYSGELEVPKNSPVQEPGPYPRSELI
SVHVSAPTSSSFTGATRRSLSPTRQRTATSKVAAGTKGGPSPAVGGNKCS
SVSSGSAGTSQLPNFRQRQQELHRYRVMIEQRRLDLLELKIAREREEALH
SEVLFHKELQIKENMIKVYEDNDCSNA*

AT13296.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8136-PD 427 CG8136-PD 1..427 1..427 2185 100 Plus
CG8136-PC 427 CG8136-PC 1..427 1..427 2185 100 Plus
CG8136-PB 441 CG8136-PB 15..441 1..427 2185 100 Plus
CG8136-PA 440 CG8136-PA 14..440 1..427 2185 100 Plus